Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G38420 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 3.4e-152 542.0 345 100.0
AT1G78110 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 4.0e-137 491.9 346 93.6
Carub.0002s2500 Capsella rubella HOM05D003923 ORTHO05D004553 7.9e-133 477.6 353 89.8
CARHR071570 Cardamine hirsuta HOM05D003923 ORTHO05D004553 1.0e-132 477.2 349 92.6
Sp5g33250 Schrenkiella parvula HOM05D003923 ORTHO05D004553 2.1e-125 453.0 346 87.9
BcaB03g15981 Brassica carinata HOM05D003923 ORTHO05D004553 2.0e-120 436.4 349 76.2
BcaB02g07147 Brassica carinata HOM05D003923 ORTHO05D004553 4.5e-120 435.3 349 81.7
BcaC08g47387 Brassica carinata HOM05D003923 ORTHO05D004553 1.9e-118 429.9 349 76.5
C06p52080 Brassica napus HOM05D003923 ORTHO05D004553 1.9e-118 429.9 349 76.5
BolC6t40231H Brassica oleracea HOM05D003923 ORTHO05D004553 1.9e-118 429.9 349 76.5
BraA07t30411Z Brassica rapa HOM05D003923 ORTHO05D004553 5.7e-115 418.3 358 83.0
Thhalv10018798m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 9.7e-115 417.5 354 83.3
BraA07t31856Z Brassica rapa HOM05D003923 ORTHO05D004553 3.4e-112 409.1 348 76.1
A07p43360 Brassica napus HOM05D003923 ORTHO05D004553 1.9e-110 403.3 348 77.9
BcaC03g15795 Brassica carinata HOM05D003923 ORTHO05D004553 4.2e-110 402.1 347 74.6
C02p35410 Brassica napus HOM05D003923 ORTHO05D004553 7.2e-110 401.4 347 73.8
A07p27700 Brassica napus HOM05D003923 ORTHO05D004553 1.6e-109 400.2 358 80.7
BolC2t09553H Brassica oleracea HOM05D003923 ORTHO05D004553 1.6e-109 400.2 347 73.8
BraA02t07205Z Brassica rapa HOM05D003923 ORTHO05D004553 1.8e-108 396.7 349 73.9
A02p22020 Brassica napus HOM05D003923 ORTHO05D004553 5.2e-108 395.2 349 73.9
BcaC08g45438 Brassica carinata HOM05D003923 ORTHO05D004553 5.3e-105 385.2 357 77.9
C06p30680 Brassica napus HOM05D003923 ORTHO05D004553 5.3e-105 385.2 357 77.9
BolC6t38232H Brassica oleracea HOM05D003923 ORTHO05D004553 5.3e-105 385.2 357 77.9
BcaB05g25102 Brassica carinata HOM05D003923 ORTHO05D004553 1.5e-102 377.1 353 64.3
Aa31LG4G8160 Aethionema arabicum HOM05D003923 ORTHO05D004553 3.6e-85 319.3 353 62.3
THA.LOC104809709 Tarenaya hassleriana HOM05D003923 ORTHO05D004553 9.8e-83 311.2 350 58.9
AL1G35680 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 1.4e-76 290.8 349 59.3
Sp1g19740 Schrenkiella parvula HOM05D003923 ORTHO05D004553 2.9e-74 283.1 351 54.4
Thhalv10008264m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 4.6e-72 275.8 352 59.9
AT1G22230 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 5.9e-72 275.4 349 55.9
A09p42540 Brassica napus HOM05D003923 ORTHO05D004553 2.3e-71 273.5 349 53.6
BraA09t39730Z Brassica rapa HOM05D003923 ORTHO05D004553 3.0e-71 273.1 349 53.3
Carub.0001s2178 Capsella rubella HOM05D003923 ORTHO05D004553 6.6e-71 271.9 351 59.5
CARHR022580 Cardamine hirsuta HOM05D003923 ORTHO05D004553 2.8e-69 266.5 353 56.4
Manes.18G068600 Manihot esculenta HOM05D003923 ORTHO05D004553 1.8e-68 263.8 370 55.7
Nn5g29082 Nelumbo nucifera HOM05D003923 ORTHO05D004553 1.5e-67 260.8 337 50.4
Cpa.g.sc36.119 Carica papaya HOM05D003923 ORTHO05D004553 1.3e-66 257.7 367 52.6
Lalb_Chr08g0241981 Lupinus albus HOM05D003923 ORTHO05D004553 1.3e-66 257.7 359 51.8
QL12p036407 Quercus lobata HOM05D003923 ORTHO05D004553 8.3e-66 255.0 349 49.9
CANSAT25G0676 Cannabis sativa HOM05D003923 ORTHO05D004553 1.6e-64 250.8 360 54.2
BcaB07g32245 Brassica carinata HOM05D003923 ORTHO05D004553 2.0e-64 250.4 359 52.1
CSS0021337 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 4.6e-64 249.2 341 50.4
TWI12G0076 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 4.6e-64 249.2 365 50.1
Lalb_Chr11g0065491 Lupinus albus HOM05D003923 ORTHO05D004553 6.0e-64 248.8 364 48.4
RcHm_v2.0_Chr7g0239471 Rosa chinensis HOM05D003923 ORTHO05D004553 3.9e-63 246.1 360 50.3
TWI56G0888 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 3.9e-63 246.1 351 51.6
Haze_22250 Corylus avellana HOM05D003923 ORTHO05D004553 6.6e-63 245.4 343 50.1
Rhsim06G0083500 Rhododendron simsii HOM05D003923 ORTHO05D004553 8.6e-63 245.0 375 47.5
BcaB07g32243 Brassica carinata HOM05D003923 ORTHO05D004553 1.1e-62 244.6 345 50.1
BcaC05g26150 Brassica carinata HOM05D003923 ORTHO05D004553 1.1e-62 244.6 345 50.1
C05p21350 Brassica napus HOM05D003923 ORTHO05D004553 1.1e-62 244.6 345 50.1
FAN18G1313 Fragaria x ananassa HOM05D003923 ORTHO05D004553 1.1e-62 244.6 356 49.4
Hma1.2p1_0120F.1_g057290 Hydrangea macrophylla HOM05D003923 ORTHO05D004553 1.5e-62 244.2 349 52.7
BolC5t30833H Brassica oleracea HOM05D003923 ORTHO05D004553 1.9e-62 243.8 345 51.0
Gorai.009G238400 Gossypium raimondii HOM05D003923 ORTHO05D004553 1.9e-62 243.8 348 48.0
CiPaw.07G181200 Carya illinoinensis HOM05D003923 ORTHO05D004553 4.3e-62 242.7 344 48.8
FAN13G1718 Fragaria x ananassa HOM05D003923 ORTHO05D004553 4.3e-62 242.7 358 47.5
Gohir.D05G230200 Gossypium hirsutum HOM05D003923 ORTHO05D004553 4.3e-62 242.7 347 47.8
Medtr3g074210 Medicago truncatula HOM05D003923 ORTHO05D004553 4.3e-62 242.7 367 48.0
Gohir.A05G227800 Gossypium hirsutum HOM05D003923 ORTHO05D004553 5.6e-62 242.3 353 47.3
CSS0001866 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 1.2e-61 241.1 344 51.2
Peaxi162Scf00041g01015 Petunia axillaris HOM05D003923 ORTHO05D004553 1.6e-61 240.7 358 50.3
MD15G1366500 Malus domestica HOM05D003923 ORTHO05D004553 4.7e-61 239.2 378 48.1
Potri.005G166400 Populus trichocarpa HOM05D003923 ORTHO05D004553 8.1e-61 238.4 347 49.0
Thecc.08G109100 Theobroma cacao HOM05D003923 ORTHO05D004553 1.1e-60 238.0 346 49.1
FvH4_5g37730 Fragaria vesca HOM05D003923 ORTHO05D004553 2.3e-60 236.9 359 49.6
FAN04G1592 Fragaria x ananassa HOM05D003923 ORTHO05D004553 2.3e-60 236.9 356 49.4
FAN08G0462 Fragaria x ananassa HOM05D003923 ORTHO05D004553 2.3e-60 236.9 359 48.5
Oeu061492.1 Olea europaea HOM05D003923 ORTHO05D004553 3.1e-60 236.5 353 51.0
Potri.002G094700 Populus trichocarpa HOM05D003923 ORTHO05D004553 3.1e-60 236.5 352 48.0
HanXRQChr15g0491381 Helianthus annuus HOM05D003923 ORTHO05D004553 4.0e-60 236.1 344 53.2
Cfa013623 Carpinus fangiana HOM05D003923 ORTHO05D004553 5.2e-60 235.7 344 50.6
EL10Ac1g01249 Beta vulgaris HOM05D003923 ORTHO05D004553 6.8e-60 235.3 348 48.6
Psat5g138360 Pisum sativum HOM05D003923 ORTHO05D004553 1.2e-59 234.6 364 48.1
A07p14630 Brassica napus HOM05D003923 ORTHO05D004553 2.6e-59 233.4 345 46.7
BraA07t29207Z Brassica rapa HOM05D003923 ORTHO05D004553 3.4e-59 233.0 345 46.4
COL.COLO4_16427 Corchorus olitorius HOM05D003923 ORTHO05D004553 3.4e-59 233.0 344 50.9
CiPaw.08G044000 Carya illinoinensis HOM05D003923 ORTHO05D004553 4.4e-59 232.6 351 47.6
Sabra05G0125400 Salix brachista HOM05D003923 ORTHO05D004553 4.4e-59 232.6 347 47.8
Phvul.009G029900 Phaseolus vulgaris HOM05D003923 ORTHO05D004553 5.8e-59 232.3 354 49.4
BcaC06g34942 Brassica carinata HOM05D003923 ORTHO05D004553 2.2e-58 230.3 346 44.5
Gohir.D06G037500 Gossypium hirsutum HOM05D003923 ORTHO05D004553 2.9e-58 229.9 346 49.7
Prupe.1G514400 Prunus persica HOM05D003923 ORTHO05D004553 1.1e-57 228.0 367 45.5
Gorai.010G042400 Gossypium raimondii HOM05D003923 ORTHO05D004553 1.4e-57 227.6 346 49.4
Oeu024542.1 Olea europaea HOM05D003923 ORTHO05D004553 4.1e-57 226.1 341 49.3
TPR.G35206 Trifolium pratense HOM05D003923 ORTHO05D004553 1.6e-56 224.2 363 48.8
vmacro21241 Vaccinium macrocarpon HOM05D003923 ORTHO05D004553 1.6e-56 224.2 363 57.3
Lj1g0006284 Lotus japonicus HOM05D003923 ORTHO05D004553 2.7e-56 223.4 363 45.7
C07p21520 Brassica napus HOM05D003923 ORTHO05D004553 6.0e-56 222.2 344 43.3
MD08G1180900 Malus domestica HOM05D003923 ORTHO05D004553 6.0e-56 222.2 369 45.3
Duzib041G0577 Durio zibethinus HOM05D003923 ORTHO05D004553 1.0e-55 221.5 346 46.2
Gohir.A06G036700 Gossypium hirsutum HOM05D003923 ORTHO05D004553 1.0e-55 221.5 345 47.8
Cc10_g07380 Coffea canephora HOM05D003923 ORTHO05D004553 1.3e-55 221.1 363 49.6
Duzib093G1759 Durio zibethinus HOM05D003923 ORTHO05D004553 2.3e-55 220.3 355 49.6
ECA232G2894 Erigeron canadensis HOM05D003923 ORTHO05D004553 2.3e-55 220.3 352 46.0
PSO210G6507 Papaver somniferum HOM05D003923 ORTHO05D004553 2.3e-55 220.3 372 47.8
Ciclev10001646m.g Citrus clementina HOM05D003923 ORTHO05D004553 1.1e-54 218.0 355 46.5
CAN.G1261.5 Capsicum annuum HOM05D003923 ORTHO05D004553 5.6e-54 215.7 357 52.4
Actinidia30763 Actinidia chinensis HOM05D003923 ORTHO05D004553 7.3e-54 215.3 349 41.5
Lsat_1_v5_gn_9_43840 Lactuca sativa HOM05D003923 ORTHO05D004553 1.2e-53 214.5 347 49.0
PSO447G0218 Papaver somniferum HOM05D003923 ORTHO05D004553 1.2e-53 214.5 370 47.0
Sc23g0000110 Simmondsia chinensis HOM05D003923 ORTHO05D004553 1.8e-52 210.7 366 48.9
TAR628G1119 Trochodendron aralioides HOM05D003923 ORTHO05D004553 1.8e-52 210.7 335 49.0
Glyma.06G104700 Glycine max HOM05D003923 ORTHO05D004553 8.9e-52 208.4 359 48.5
Aqoxy5G01999 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 2.6e-51 206.8 355 43.1
MSTRG.24466 Avicennia marina HOM05D003923 ORTHO05D004553 3.4e-51 206.5 369 40.1
Glyma.04G103500 Glycine max HOM05D003923 ORTHO05D004553 3.4e-51 206.5 335 50.4
Sopen04g029130 Solanum pennellii HOM05D003923 ORTHO05D004553 1.4e-49 201.1 364 51.4
MELO3C010430.2 Cucumis melo HOM05D003923 ORTHO05D004553 2.4e-49 200.3 346 44.5
MBI02_g08739_MAGBIO Magnolia biondii HOM05D003923 ORTHO05D004553 3.0e-47 193.4 352 45.2
Eucgr.F02437 Eucalyptus grandis HOM05D003923 ORTHO05D004553 6.6e-47 192.2 349 39.3
PGSC0003DMG400009479 Solanum tuberosum HOM05D003923 ORTHO05D004553 8.6e-47 191.8 337 48.1
Nitab4.5_0000675g0060 Nicotiana tabacum HOM05D003923 ORTHO05D004553 1.1e-46 191.4 333 45.9
CsaV3_4G028650 Cucumis sativus L. HOM05D003923 ORTHO05D004553 1.5e-46 191.0 348 47.4
Duzib116G0286 Durio zibethinus HOM05D003923 ORTHO05D004553 2.5e-46 190.3 282 51.1
Migut.N02906 Erythranthe guttata HOM05D003923 ORTHO05D004553 3.3e-46 189.9 374 46.8
Ca_15243_v3 Cicer arietinum L. HOM05D003923 ORTHO05D004553 4.3e-46 189.5 367 45.2
Eucgr.F00301 Eucalyptus grandis HOM05D003923 ORTHO05D004553 4.3e-46 189.5 251 45.8
Peaxi162Scf00160g00147 Petunia axillaris HOM05D003923 ORTHO05D004553 5.6e-46 189.1 343 43.7
Nitab4.5_0001992g0040 Nicotiana tabacum HOM05D003923 ORTHO05D004553 3.6e-45 186.4 340 48.5
Sed0005628 Sechium edule HOM05D003923 ORTHO05D004553 6.2e-45 185.7 354 42.9
ClCG11G015440 Citrullus lanatus HOM05D003923 ORTHO05D004553 1.1e-44 184.9 347 43.8
VMungo1309G2192 Vigna mungo HOM05D003923 ORTHO05D004553 1.1e-44 184.9 353 50.7
Aa31LG7G6170 Aethionema arabicum HOM05D003923 ORTHO05D004553 1.4e-44 184.5 338 39.3
Migut.O00455 Erythranthe guttata HOM05D003923 ORTHO05D004553 1.8e-44 184.1 178 56.2
Nitab4.5_0000421g0080 Nicotiana tabacum HOM05D003923 ORTHO05D004553 1.8e-44 184.1 344 46.5
ECA246G1087 Erigeron canadensis HOM05D003923 ORTHO05D004553 5.2e-44 182.6 337 43.6
Solyc12g056990.1 Solanum lycopersicum HOM05D003923 ORTHO05D004553 6.9e-44 182.2 350 41.7
PGSC0003DMG400008539 Solanum tuberosum HOM05D003923 ORTHO05D004553 9.0e-44 181.8 351 41.0
Sabra02G0074700 Salix brachista HOM05D003923 ORTHO05D004553 1.2e-43 181.4 344 41.3
CsaV3_2G024220 Cucumis sativus L. HOM05D003923 ORTHO05D004553 7.6e-43 178.7 341 45.5
Nitab4.5_0002243g0010 Nicotiana tabacum HOM05D003923 ORTHO05D004553 7.6e-43 178.7 314 41.1
Manes.02G153800 Manihot esculenta HOM05D003923 ORTHO05D004553 9.9e-43 178.3 365 40.5
MELO3C011359.2 Cucumis melo HOM05D003923 ORTHO05D004553 1.3e-42 177.9 341 48.7
A07p43420 Brassica napus HOM05D003923 ORTHO05D004553 5.4e-41 172.6 114 82.5
unitig_21.g20601 Utricularia gibba HOM05D003923 ORTHO05D004553 5.4e-41 172.6 339 38.1
ClCG08G011040 Citrullus lanatus HOM05D003923 ORTHO05D004553 9.3e-41 171.8 338 47.0
MSTRG.22149 Avicennia marina HOM05D003923 ORTHO05D004553 1.6e-40 171.0 166 55.4
Ah.05g170190 Amaranthus hybridus HOM05D003923 ORTHO05D004553 2.7e-40 170.2 354 42.4
PGR042G1650 Punica granatum HOM05D003923 ORTHO05D004553 1.0e-39 168.3 350 40.0
Lalb_Chr17g0344141 Lupinus albus HOM05D003923 ORTHO05D004553 6.6e-39 165.6 336 36.3
BolC7t42678H Brassica oleracea HOM05D003923 ORTHO05D004553 1.3e-37 161.4 169 55.0
Solyc04g072940.4 Solanum lycopersicum HOM05D003923 ORTHO05D004553 1.3e-37 161.4 319 45.8
Sopen00g003260 Solanum pennellii HOM05D003923 ORTHO05D004553 6.2e-37 159.1 313 40.3
ATR0564G364 Amborella trichopoda HOM05D003923 ORTHO05D004553 2.4e-36 157.1 340 39.7
Lalb_Chr04g0253191 Lupinus albus HOM05D003923 ORTHO05D004553 6.4e-34 149.1 329 35.3
unitig_744.g24093 Utricularia gibba HOM05D003923 ORTHO05D004553 4.2e-33 146.4 331 37.2
Aqoxy6G00599 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 2.1e-32 144.1 342 32.5
Atru.chr13.1213 Acer truncatum HOM05D003923 ORTHO05D004553 4.6e-32 142.9 301 45.8
Zm00001eb098670 Zea mays HOM05D003923 ORTHO05D004553 4.6e-32 142.9 375 34.7
Sed0003612 Sechium edule HOM05D003923 ORTHO05D004553 1.0e-31 141.7 251 40.6
SalBow7G0529 Salvia bowleyana HOM05D003923 ORTHO05D004553 6.7e-31 139.0 318 44.3
Zm00001eb194180 Zea mays HOM05D003923 ORTHO05D004553 3.3e-30 136.7 354 37.6
Dinv13027 Davidia involucrata HOM05D003923 ORTHO05D004553 1.3e-29 134.8 235 45.1
AUR62027732 Chenopodium quinoa HOM05D003923 ORTHO05D004553 2.8e-29 133.7 200 46.0
PSO781G0128 Papaver somniferum HOM05D003923 ORTHO05D004553 3.1e-28 130.2 407 30.7
HanXRQChr05g0162921 Helianthus annuus HOM05D003923 ORTHO05D004553 4.0e-28 129.8 160 48.1
PSO541G2428 Papaver somniferum HOM05D003923 ORTHO05D004553 1.5e-27 127.9 422 31.3
Zm00001eb255200 Zea mays HOM05D003923 ORTHO05D004553 4.5e-27 126.3 338 34.0
SEGI_41423 Sequoiadendron giganteum HOM05D003923 ORTHO05D004553 5.8e-27 125.9 330 37.6
HPP92_002331 Vanilla planifolia HOM05D003923 ORTHO05D004553 3.8e-26 123.2 356 45.5
Zm00001eb311240 Zea mays HOM05D003923 ORTHO05D004553 4.9e-26 122.9 363 30.9
Sed0022190 Sechium edule HOM05D003923 ORTHO05D004553 7.4e-22 109.0 258 34.5
ATR0122G028 Amborella trichopoda HOM05D003923 ORTHO05D004553 1.3e-21 108.2 324 35.2
CDE12G0356 Ceratophyllum demersum HOM05D003923 ORTHO05D004553 4.0e-20 103.2 164 42.1
Os02g0753400 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 2.6e-19 100.5 349 44.4
Os09g0370000 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 3.8e-18 96.7 362 45.9
BcaB03g11901 Brassica carinata HOM05D003923 ORTHO05D004553 2.8e-13 80.5 102 50.0
BcaC07g38451 Brassica carinata HOM05D003923 ORTHO05D004553 1.7e-10 71.2 91 48.4
C08p21440 Brassica napus HOM05D003923 ORTHO05D004553 2.9e-10 70.5 51 64.7
BolC8t49783H Brassica oleracea HOM05D003923 ORTHO05D004553 2.9e-10 70.5 51 64.7
GSVIVG01009013001 Vitis vinifera HOM05D003923 ORTHO05D004553 6.5e-10 69.3 38 76.3
unitig_578.g16204 Utricularia gibba HOM05D003923 ORTHO05D004553 4.2e-09 66.6 222 28.8
Aqoxy4G00578 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 7.2e-09 65.9 168 32.1
ATR0153G027 Amborella trichopoda HOM05D003923 ORTHO05D004553 2.3e-07 60.8 154 37.7
Glyma.13G273000 Glycine max HOM05D004118 ORTHO05D004686 1.5e-06 58.2 101 36.6
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 1.9e-06 57.8 290 25.2
FAN25G0990 Fragaria x ananassa HOM05D004118 ORTHO05D004686 4.3e-06 56.6 108 36.1
RcHm_v2.0_Chr5g0032241 Rosa chinensis HOM05D004118 ORTHO05D004686 5.7e-06 56.2 122 33.6


User provided reference genes

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