Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G38200 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 3.1e-66 255.0 129 100.0
AT1G77932 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 2.7e-38 162.2 109 76.1
CARHR071410 Cardamine hirsuta HOM05D004520 ORTHO05D005520 7.7e-33 144.1 115 67.8
Carub.0002s2483 Capsella rubella HOM05D004520 ORTHO05D005520 2.9e-24 115.5 87 70.1
Potri.002G092000 Populus trichocarpa HOM05D004520 ORTHO05D005520 2.0e-17 92.8 130 46.9
Potri.005G166900 Populus trichocarpa HOM05D004520 ORTHO05D005520 2.0e-17 92.8 126 46.8
BcaC05g26135 Brassica carinata HOM05D004520 ORTHO05D005520 4.6e-17 91.7 122 50.0
C05p21170 Brassica napus HOM05D004520 ORTHO05D005520 4.6e-17 91.7 122 50.0
BolC5t30811H Brassica oleracea HOM05D004520 ORTHO05D005520 4.6e-17 91.7 122 50.0
Duzib041G0092 Durio zibethinus HOM05D004520 ORTHO05D005520 4.6e-17 91.7 134 46.3
Duzib093G1357 Durio zibethinus HOM05D004520 ORTHO05D005520 4.6e-17 91.7 145 42.8
A09p42670 Brassica napus HOM05D004520 ORTHO05D005520 7.8e-17 90.9 122 49.2
BraA09t39742Z Brassica rapa HOM05D004520 ORTHO05D005520 7.8e-17 90.9 122 49.2
BcaC07g39145 Brassica carinata HOM05D003425 ORTHO05D003897 1.0e-16 90.5 114 50.0
A07p14760 Brassica napus HOM05D004520 ORTHO05D005520 1.0e-16 90.5 141 46.1
BolC7t42702H Brassica oleracea HOM05D004520 ORTHO05D005520 1.0e-16 90.5 108 51.9
Duzib041G0365 Durio zibethinus HOM05D004520 ORTHO05D005520 1.0e-16 90.5 134 45.5
Duzib116G0626 Durio zibethinus HOM05D004520 ORTHO05D005520 1.0e-16 90.5 128 47.7
BolC8t49777H Brassica oleracea HOM05D004520 ORTHO05D005520 1.3e-16 90.1 135 45.9
FAN13G2359 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.3e-16 90.1 135 44.4
BraA07t29221Z Brassica rapa HOM05D004520 ORTHO05D005520 2.3e-16 89.4 115 50.4
FvH4_5g38140 Fragaria vesca HOM05D004520 ORTHO05D000031 2.3e-16 89.4 115 47.0
FAN18G4472 Fragaria x ananassa HOM05D004520 ORTHO05D005520 2.3e-16 89.4 115 47.0
Aa31LG7G6090 Aethionema arabicum HOM05D004520 ORTHO05D005520 3.0e-16 89.0 126 48.4
BcaB03g11898 Brassica carinata HOM05D003425 ORTHO05D003897 3.0e-16 89.0 110 50.9
BcaB03g14234 Brassica carinata HOM05D004520 ORTHO05D005520 3.0e-16 89.0 122 47.5
C07p21720 Brassica napus HOM05D004520 ORTHO05D005520 3.9e-16 88.6 106 52.8
FAN08G3230 Fragaria x ananassa HOM05D004520 ORTHO05D005520 3.9e-16 88.6 115 47.0
Oeu024567.1 Olea europaea HOM05D004520 ORTHO05D005520 6.6e-16 87.8 103 44.7
Sabra05G0127200 Salix brachista HOM05D004520 ORTHO05D005520 6.6e-16 87.8 127 46.5
CARHR022460 Cardamine hirsuta HOM05D004520 ORTHO05D005520 8.6e-16 87.4 125 47.2
FAN04G1722 Fragaria x ananassa HOM05D004520 ORTHO05D005520 8.6e-16 87.4 135 43.7
Gohir.D06G040100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 8.6e-16 87.4 122 42.6
AT1G22110 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 1.1e-15 87.0 124 48.4
Carub.0001s2166 Capsella rubella HOM05D004520 ORTHO05D005520 1.1e-15 87.0 124 48.4
AL1G35550 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 1.5e-15 86.7 124 47.6
RcHm_v2.0_Chr7g0240121 Rosa chinensis HOM05D004520 ORTHO05D005520 1.5e-15 86.7 113 46.9
BcaB07g32230 Brassica carinata HOM05D004520 ORTHO05D005520 1.9e-15 86.3 122 46.7
Manes.02G156600 Manihot esculenta HOM05D004520 ORTHO05D005520 1.9e-15 86.3 110 46.4
Gohir.A06G039100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 3.3e-15 85.5 125 41.6
Prupe.1G510900 Prunus persica HOM05D004520 ORTHO05D005520 3.3e-15 85.5 103 48.5
Glyma.14G168100 Glycine max HOM05D004520 ORTHO05D005520 4.3e-15 85.1 111 45.0
Thecc.08G113300 Theobroma cacao HOM05D004520 ORTHO05D005520 5.6e-15 84.7 136 41.2
MD15G1408400 Malus domestica HOM05D004520 ORTHO05D005520 7.3e-15 84.3 112 46.4
TWI56G1051 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 7.3e-15 84.3 121 43.0
BcaC06g34928 Brassica carinata HOM05D004520 ORTHO05D005520 1.2e-14 83.6 120 45.8
Dinv44735 Davidia involucrata HOM05D004520 ORTHO05D005520 1.2e-14 83.6 50 76.0
QL12p035753 Quercus lobata HOM05D004520 ORTHO05D005520 1.2e-14 83.6 115 42.6
Ciclev10003829m.g Citrus clementina HOM05D004520 ORTHO05D005520 2.1e-14 82.8 128 44.5
Cc00_g24440 Coffea canephora HOM05D004520 ORTHO05D005520 2.1e-14 82.8 104 47.1
CiPaw.05G232200 Carya illinoinensis HOM05D004520 ORTHO05D005520 2.8e-14 82.4 110 42.7
Gorai.010G044800 Gossypium raimondii HOM05D004520 ORTHO05D005520 2.8e-14 82.4 124 42.7
TWI12G0901 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 3.6e-14 82.0 120 40.8
MD08G1176500 Malus domestica HOM05D004520 ORTHO05D005520 4.7e-14 81.6 134 40.3
MD08G1219800 Malus domestica HOM05D004520 ORTHO05D005520 8.0e-14 80.9 76 57.9
Prupe.1G552400 Prunus persica HOM05D004520 ORTHO05D005520 8.0e-14 80.9 50 74.0
arahy.Tifrunner.gnm1.ann1.1581IW Arachis hypogaea HOM05D004520 ORTHO05D005520 1.1e-13 80.5 87 46.0
arahy.Tifrunner.gnm1.ann1.8K5I59 Arachis hypogaea HOM05D004520 ORTHO05D005520 1.4e-13 80.1 67 55.2
Gohir.A02G075405 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.4e-13 80.1 108 45.4
Gorai.005G092700 Gossypium raimondii HOM05D004520 ORTHO05D005520 1.4e-13 80.1 110 44.5
CiPaw.06G022900 Carya illinoinensis HOM05D004520 ORTHO05D005520 1.8e-13 79.7 124 41.1
Gohir.D02G082633 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.8e-13 79.7 110 44.5
Lj1g0026094 Lotus japonicus HOM05D004520 ORTHO05D005520 2.3e-13 79.3 105 44.8
Lalb_Chr10g0102151 Lupinus albus HOM05D004520 ORTHO05D005520 2.3e-13 79.3 108 45.4
COL.COLO4_16491 Corchorus olitorius HOM05D004520 ORTHO05D005520 3.1e-13 79.0 76 56.6
Psat2g075760 Pisum sativum HOM05D004520 ORTHO05D005520 3.1e-13 79.0 103 46.6
PGR042G0053 Punica granatum HOM05D004520 ORTHO05D005520 3.1e-13 79.0 114 43.9
Migut.N02919 Erythranthe guttata HOM05D004520 ORTHO05D005520 4.0e-13 78.6 109 44.0
MD15G1363200 Malus domestica HOM05D004520 ORTHO05D005520 4.0e-13 78.6 134 39.6
Haze_00561 Corylus avellana HOM05D004520 ORTHO05D005520 6.8e-13 77.8 106 45.3
Cfa015929 Carpinus fangiana HOM05D004520 ORTHO05D005520 8.9e-13 77.4 46 78.3
Nitab4.5_0006678g0010 Nicotiana tabacum HOM05D004520 ORTHO05D005520 1.2e-12 77.0 104 43.3
Medtr5g061650 Medicago truncatula HOM05D004520 ORTHO05D005520 1.5e-12 76.6 112 45.5
Ca_05234_v3 Cicer arietinum L. HOM05D004520 ORTHO05D005520 2.0e-12 76.3 103 42.7
Gohir.D05G269800 Gossypium hirsutum HOM05D004520 ORTHO05D005520 2.0e-12 76.3 114 45.6
Peaxi162Scf00160g01523 Petunia axillaris HOM05D004520 ORTHO05D005520 2.0e-12 76.3 121 39.7
Manes.18G070900 Manihot esculenta HOM05D004520 ORTHO05D005520 2.6e-12 75.9 50 68.0
CANSAT25G0040 Cannabis sativa HOM05D004520 ORTHO05D005520 3.4e-12 75.5 50 72.0
CANSAT25G0424 Cannabis sativa HOM05D004520 ORTHO05D005520 3.4e-12 75.5 50 72.0
Prupe.1G096600 Prunus persica HOM05D004520 ORTHO05D005520 3.4e-12 75.5 46 76.1
Atru.chr13.1276 Acer truncatum HOM05D004520 ORTHO05D005520 7.5e-12 74.3 49 69.4
Gohir.A05G268200 Gossypium hirsutum HOM05D004520 ORTHO05D005520 7.5e-12 74.3 114 44.7
Gorai.009G282400 Gossypium raimondii HOM05D004520 ORTHO05D005520 9.8e-12 73.9 114 43.9
Actinidia10294 Actinidia chinensis HOM05D004520 ORTHO05D005520 1.3e-11 73.6 101 48.5
Phvul.009G027500 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 1.3e-11 73.6 103 43.7
TPR.G39080 Trifolium pratense HOM05D004520 ORTHO05D005520 1.3e-11 73.6 126 38.9
Rhsim06G0085800 Rhododendron simsii HOM05D004520 ORTHO05D005520 3.7e-11 72.0 118 43.2
Nitab4.5_0002534g0030 Nicotiana tabacum HOM05D004520 ORTHO05D005520 4.9e-11 71.6 78 48.7
Glyma.13G086100 Glycine max HOM05D004520 ORTHO05D005520 6.4e-11 71.2 90 45.6
Peaxi162Scf00168g00043 Petunia axillaris HOM05D004520 ORTHO05D005520 8.3e-11 70.9 136 37.5
Phvul.008G170000 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 8.3e-11 70.9 48 66.7
CSS0017832 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 1.4e-10 70.1 125 37.6
CAN.G535.13 Capsicum annuum HOM05D004520 ORTHO05D005520 1.4e-10 70.1 47 66.0
CDE10G0363 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 1.9e-10 69.7 50 60.0
CDE10G1290 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 1.9e-10 69.7 50 60.0
Sed0005622 Sechium edule HOM05D004520 ORTHO05D005520 1.9e-10 69.7 63 55.6
Thecc.08G113500 Theobroma cacao HOM05D004520 ORTHO05D005520 2.4e-10 69.3 50 66.0
MBI02_g37831_MAGBIO Magnolia biondii HOM05D004520 ORTHO05D005520 4.1e-10 68.6 50 58.0
PGSC0003DMG400027533 Solanum tuberosum HOM05D004520 ORTHO05D005520 4.1e-10 68.6 77 46.8
CSS0031359 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 5.4e-10 68.2 67 50.7
Solyc04g072650.1 Solanum lycopersicum HOM05D004520 ORTHO05D005520 7.0e-10 67.8 76 47.4
Atru.chr3.816 Acer truncatum HOM05D004520 ORTHO05D005520 9.2e-10 67.4 113 44.2
COL.COLO4_16493 Corchorus olitorius HOM05D004520 ORTHO05D005520 9.2e-10 67.4 50 64.0
SalBow6G1129 Salvia bowleyana HOM05D004520 ORTHO05D005520 2.0e-09 66.2 99 36.4
SalBow6G4633 Salvia bowleyana HOM05D004520 ORTHO05D005520 2.0e-09 66.2 99 36.4
Manes.02G156700 Manihot esculenta HOM05D004520 ORTHO05D005520 2.7e-09 65.9 70 48.6
ATR0564G398 Amborella trichopoda HOM05D004520 ORTHO05D005520 3.5e-09 65.5 48 62.5
Gohir.A05G230000 Gossypium hirsutum HOM05D004520 ORTHO05D005520 6.0e-09 64.7 49 65.3
Gohir.D05G232300 Gossypium hirsutum HOM05D004520 ORTHO05D005520 6.0e-09 64.7 49 65.3
Gorai.009G240500 Gossypium raimondii HOM05D004520 ORTHO05D005520 6.0e-09 64.7 49 65.3
Sopen04g028850 Solanum pennellii HOM05D004520 ORTHO05D005520 6.0e-09 64.7 76 46.1
PSO210G7148 Papaver somniferum HOM05D004520 ORTHO05D005520 1.0e-08 63.9 49 61.2
PSO447G0143 Papaver somniferum HOM05D004520 ORTHO05D005520 1.0e-08 63.9 49 61.2
TAR381G0361 Trochodendron aralioides HOM05D004520 ORTHO05D005520 3.0e-08 62.4 47 59.6
Migut.C00189 Erythranthe guttata HOM05D004520 ORTHO05D005520 6.6e-08 61.2 49 53.1
Potri.005G169900 Populus trichocarpa HOM05D004520 ORTHO05D005520 6.6e-08 61.2 50 58.0
CsaV3_5G023810 Cucumis sativus L. HOM05D004520 ORTHO05D005520 8.6e-08 60.8 92 39.1
Lsat_1_v5_gn_9_44740 Lactuca sativa HOM05D004520 ORTHO05D005520 8.6e-08 60.8 54 57.4
Oeu061390.1 Olea europaea HOM05D004520 ORTHO05D005520 8.6e-08 60.8 42 61.9
TPR.G34 Trifolium pratense HOM05D004520 ORTHO05D005520 8.6e-08 60.8 131 35.9
Sabra05G0127300 Salix brachista HOM05D004520 ORTHO05D005520 1.1e-07 60.5 104 36.5
THA.LOC104816921 Tarenaya hassleriana HOM05D004520 ORTHO05D005520 1.1e-07 60.5 52 59.6
SGA_v2.0_scaffold315G48386 Striga asiatica HOM05D004520 ORTHO05D005520 1.5e-07 60.1 51 54.9
MELO3C022816.2 Cucumis melo HOM05D004520 ORTHO05D005520 1.9e-07 59.7 93 39.8
Aqoxy6G00530 Aquilegia oxysepala HOM05D004520 ORTHO05D005520 3.3e-07 58.9 68 47.1
ClCG03G008910 Citrullus lanatus HOM05D004520 ORTHO05D005520 3.3e-07 58.9 63 49.2
FAN04G0088 Fragaria x ananassa HOM05D004520 ORTHO05D005520 9.5e-07 57.4 77 45.5
CiPaw.05G232100 Carya illinoinensis HOM05D004520 ORTHO05D005520 1.2e-06 57.0 50 54.0
FAN08G0369 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.6e-06 56.6 77 45.5
FAN18G1022 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.6e-06 56.6 77 45.5
QL12p035728 Quercus lobata HOM05D004520 ORTHO05D005520 1.6e-06 56.6 54 53.7
Actinidia10293 Actinidia chinensis HOM05D001087 ORTHO05D005520 2.1e-06 56.2 87 33.3
unitig_578.g16210 Utricularia gibba HOM05D004520 ORTHO05D005520 2.8e-06 55.8 97 41.2
SEGI_20648 Sequoiadendron giganteum HOM05D004520 ORTHO05D005520 3.6e-06 55.5 50 52.0
FvH4_5g38160 Fragaria vesca HOM05D004520 ORTHO05D005520 6.2e-06 54.7 77 44.2


User provided reference genes

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