Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G38170 Arabidopsis lyrata HOM05D001663 ORTHO05D005717 6.4e-263 910.2 461 100.0
AT1G77890 Arabidopsis thaliana HOM05D001663 ORTHO05D005717 2.3e-244 848.6 461 93.5
Carub.0002s2479 Capsella rubella HOM05D001663 ORTHO05D005717 2.2e-231 805.4 459 88.7
CARHR071380 Cardamine hirsuta HOM05D001663 ORTHO05D005717 3.9e-228 794.7 461 87.4
Sp5g33060 Schrenkiella parvula HOM05D001663 ORTHO05D005717 1.6e-213 746.1 453 84.5
BolC6t40206H Brassica oleracea HOM05D001663 ORTHO05D005717 3.4e-208 728.4 465 81.5
BraA07t31838Z Brassica rapa HOM05D001663 ORTHO05D005717 1.4e-206 723.0 465 81.1
BcaB03g15913 Brassica carinata HOM05D001663 ORTHO05D005717 1.0e-204 716.8 466 82.2
Thhalv10018451m.g Eutrema salsugineum HOM05D001663 ORTHO05D005717 1.4e-185 653.3 464 76.3
Aa31LG4G7980 Aethionema arabicum HOM05D001663 ORTHO05D005717 2.2e-183 646.0 484 72.1
A07p43160 Brassica napus HOM05D001663 ORTHO05D005717 3.1e-177 625.5 376 84.6
C06p51850 Brassica napus HOM05D001663 ORTHO05D005717 5.3e-177 624.8 376 84.3
Dinv44724 Davidia involucrata HOM05D001663 ORTHO05D005717 5.4e-121 438.7 451 54.1
CSS0006833 Camellia sinensis var. sinensis HOM05D001663 ORTHO05D005717 3.0e-119 433.0 450 54.4
FvH4_5g38340 Fragaria vesca HOM05D001663 ORTHO05D005717 3.6e-117 426.0 452 54.0
TWI56G1202 Tripterygium wilfordii HOM05D001663 ORTHO05D005717 8.1e-117 424.9 460 53.3
TWI12G1423 Tripterygium wilfordii HOM05D001663 ORTHO05D005717 1.1e-116 424.5 461 53.8
FAN18G1299 Fragaria x ananassa HOM05D001663 ORTHO05D005717 1.4e-116 424.1 452 54.0
Nn1g05239 Nelumbo nucifera HOM05D001663 ORTHO05D005717 2.4e-116 423.3 451 54.5
COL.COLO4_16510 Corchorus olitorius HOM05D001663 ORTHO05D005717 4.0e-116 422.5 459 52.7
FAN04G0194 Fragaria x ananassa HOM05D001663 ORTHO05D005717 6.9e-116 421.8 452 53.3
FAN08G2783 Fragaria x ananassa HOM05D001663 ORTHO05D005717 9.0e-116 421.4 452 53.8
Rhsim07G0199300 Rhododendron simsii HOM05D001663 ORTHO05D005717 9.0e-116 421.4 454 52.9
Manes.18G101600 Manihot esculenta HOM05D001663 ORTHO05D005717 1.2e-115 421.0 452 52.9
Duzib041G0602 Durio zibethinus HOM05D001663 ORTHO05D005717 2.6e-115 419.9 452 52.9
Ciclev10001001m.g Citrus clementina HOM05D001663 ORTHO05D005717 4.5e-115 419.1 452 53.3
RhsimUnG0073000 Rhododendron simsii HOM05D001663 ORTHO05D005717 4.5e-115 419.1 454 52.6
Nn5g28968 Nelumbo nucifera HOM05D001663 ORTHO05D005717 1.3e-114 417.5 451 52.3
Thecc.08G114700 Theobroma cacao HOM05D001663 ORTHO05D005717 1.7e-114 417.2 452 52.7
PSO210G6007 Papaver somniferum HOM05D001663 ORTHO05D005717 4.9e-114 415.6 458 52.0
Gohir.D05G269900 Gossypium hirsutum HOM05D001663 ORTHO05D005717 8.4e-114 414.8 452 52.7
Gorai.009G282600 Gossypium raimondii HOM05D001663 ORTHO05D005717 8.4e-114 414.8 452 52.7
TAR376G0684 Trochodendron aralioides HOM05D001663 ORTHO05D005717 1.1e-113 414.5 452 53.1
PSO447G0047 Papaver somniferum HOM05D001663 ORTHO05D005717 1.9e-113 413.7 458 51.5
TPR.G30426 Trifolium pratense HOM05D001663 ORTHO05D005717 3.2e-113 412.9 449 52.6
Cpa.g.sc1782.1 Carica papaya HOM05D001663 ORTHO05D005717 4.2e-113 412.5 452 53.1
Prupe.1G508500 Prunus persica HOM05D001663 ORTHO05D005717 7.1e-113 411.8 451 52.8
Aa31LG9G14450 Aethionema arabicum HOM05D001663 ORTHO05D005717 3.5e-112 409.5 459 51.4
GSVIVG01008963001 Vitis vinifera HOM05D001663 ORTHO05D005717 4.6e-112 409.1 458 52.0
Medtr5g061040 Medicago truncatula HOM05D001663 ORTHO05D005717 6.0e-112 408.7 451 51.7
Ca_26536_v3 Cicer arietinum L. HOM05D001663 ORTHO05D005717 7.9e-112 408.3 449 51.9
Hma1.2p1_0529F.1_g173150 Hydrangea macrophylla HOM05D001663 ORTHO05D005717 1.0e-111 407.9 455 52.3
vmacro04774 Vaccinium macrocarpon HOM05D001663 ORTHO05D005717 1.0e-111 407.9 414 55.6
Duzib093G0504 Durio zibethinus HOM05D001663 ORTHO05D005717 1.3e-111 407.5 452 51.8
Eucgr.H00930 Eucalyptus grandis HOM05D001663 ORTHO05D005717 1.3e-111 407.5 459 50.8
Gorai.005G092500 Gossypium raimondii HOM05D001663 ORTHO05D005717 1.8e-111 407.1 452 51.5
Phvul.008G169200 Phaseolus vulgaris HOM05D001663 ORTHO05D005717 3.0e-111 406.4 452 51.8
Thhalv10028627m.g Eutrema salsugineum HOM05D001663 ORTHO05D005717 6.7e-111 405.2 459 50.3
MD08G1174500 Malus domestica HOM05D001663 ORTHO05D005717 8.7e-111 404.8 464 51.9
arahy.Tifrunner.gnm1.ann1.7M6WCL Arachis hypogaea HOM05D001663 ORTHO05D005717 1.1e-110 404.4 457 50.1
Lj1g0004140 Lotus japonicus HOM05D001663 ORTHO05D005717 3.3e-110 402.9 449 51.2
Gohir.A02G075400 Gossypium hirsutum HOM05D001663 ORTHO05D005717 5.6e-110 402.1 452 50.9
HanXRQChr05g0162261 Helianthus annuus HOM05D001663 ORTHO05D005717 5.6e-110 402.1 455 51.6
AT4G08540 Arabidopsis thaliana HOM05D001663 ORTHO05D005717 2.8e-109 399.8 456 49.6
MD15G1361100 Malus domestica HOM05D001663 ORTHO05D005717 2.8e-109 399.8 455 52.1
CARHR259570 Cardamine hirsuta HOM05D001663 ORTHO05D005717 6.2e-109 398.7 459 49.9
Glyma.14G167200 Glycine max HOM05D001663 ORTHO05D005717 8.1e-109 398.3 423 51.8
PGSC0003DMG400027563 Solanum tuberosum HOM05D001663 ORTHO05D005717 8.1e-109 398.3 465 49.9
Sp6g09330 Schrenkiella parvula HOM05D001663 ORTHO05D005717 1.4e-108 397.5 458 49.3
THA.LOC104816946 Tarenaya hassleriana HOM05D001663 ORTHO05D005717 1.8e-108 397.1 460 50.4
Solyc04g072440.4 Solanum lycopersicum HOM05D001663 ORTHO05D005717 2.4e-108 396.7 465 50.1
Cc10_g06030 Coffea canephora HOM05D001663 ORTHO05D005717 3.1e-108 396.4 450 49.1
Lalb_Chr10g0102081 Lupinus albus HOM05D001663 ORTHO05D005717 3.1e-108 396.4 458 49.8
Nitab4.5_0004952g0050 Nicotiana tabacum HOM05D001663 ORTHO05D005717 4.0e-108 396.0 457 51.0
CiPaw.05G231300 Carya illinoinensis HOM05D001663 ORTHO05D005717 5.3e-108 395.6 450 51.1
Sopen04g028600 Solanum pennellii HOM05D001663 ORTHO05D005717 5.3e-108 395.6 465 49.9
Glyma.13G085400 Glycine max HOM05D001663 ORTHO05D005717 2.0e-107 393.7 452 49.8
Migut.C00211 Erythranthe guttata HOM05D001663 ORTHO05D005717 2.6e-107 393.3 458 48.9
Ah.09g230050 Amaranthus hybridus HOM05D001663 ORTHO05D005717 3.4e-107 392.9 459 51.6
CSS0003227 Camellia sinensis var. sinensis HOM05D001663 ORTHO05D005717 3.4e-107 392.9 377 55.7
ECA246G3782 Erigeron canadensis HOM05D001663 ORTHO05D005717 5.8e-107 392.1 449 50.3
Sabra02G0071900 Salix brachista HOM05D001663 ORTHO05D005717 5.8e-107 392.1 469 50.1
DCAR_003554 Daucus carota HOM05D001663 ORTHO05D005717 7.6e-107 391.7 456 51.1
Nitab4.5_0001915g0140 Nicotiana tabacum HOM05D001663 ORTHO05D005717 7.6e-107 391.7 457 50.5
Carub.0006s2708 Capsella rubella HOM05D001663 ORTHO05D005717 9.9e-107 391.3 457 49.2
THA.LOC104813136 Tarenaya hassleriana HOM05D001663 ORTHO05D005717 1.3e-106 391.0 458 49.3
Potri.002G090900 Populus trichocarpa HOM05D001663 ORTHO05D005717 1.7e-106 390.6 451 51.0
QL12p035556 Quercus lobata HOM05D001663 ORTHO05D005717 2.9e-106 389.8 450 50.9
CAN.G617.5 Capsicum annuum HOM05D001663 ORTHO05D005717 5.5e-105 385.6 457 49.5
A09p30170 Brassica napus HOM05D001663 ORTHO05D005717 2.1e-104 383.6 459 47.9
Gohir.D02G082500 Gossypium hirsutum HOM05D001663 ORTHO05D005717 2.1e-104 383.6 452 49.8
EL10Ac8g18308 Beta vulgaris HOM05D001663 ORTHO05D005717 4.6e-104 382.5 463 49.7
BcaC04g20910 Brassica carinata HOM05D001663 ORTHO05D005717 4.6e-104 382.5 459 48.1
C09p38040 Brassica napus HOM05D001663 ORTHO05D005717 4.6e-104 382.5 459 48.1
BolC9t56640H Brassica oleracea HOM05D001663 ORTHO05D005717 4.6e-104 382.5 459 48.1
BcaB01g01352 Brassica carinata HOM05D001663 ORTHO05D005717 7.9e-104 381.7 459 48.1
PGR042G1550 Punica granatum HOM05D001663 ORTHO05D005717 1.3e-103 380.9 450 49.8
MSTRG.24955 Avicennia marina HOM05D001663 ORTHO05D005717 2.3e-103 380.2 451 49.2
Haze_00550 Corylus avellana HOM05D001663 ORTHO05D005717 3.9e-103 379.4 450 50.2
Psat2g076640 Pisum sativum HOM05D001663 ORTHO05D005717 6.7e-103 378.6 412 52.9
CANSAT25G1457 Cannabis sativa HOM05D001663 ORTHO05D005717 1.5e-102 377.5 452 49.3
Sed0003415 Sechium edule HOM05D001663 ORTHO05D005717 9.6e-102 374.8 447 49.4
MELO3C008130.2 Cucumis melo HOM05D001663 ORTHO05D005717 1.3e-101 374.4 446 49.3
Aqoxy3G00244 Aquilegia oxysepala HOM05D001663 ORTHO05D005717 1.4e-100 370.9 483 46.2
CsaV3_2G033570 Cucumis sativus L. HOM05D001663 ORTHO05D005717 1.4e-100 370.9 446 49.1
MSTRG.947 Avicennia marina HOM05D001663 ORTHO05D005717 4.0e-100 369.4 450 48.4
Lalb_Chr04g0253241 Lupinus albus HOM05D001663 ORTHO05D005717 4.0e-100 369.4 458 47.6
RcHm_v2.0_Chr7g0240361 Rosa chinensis HOM05D001663 ORTHO05D005717 3.4e-99 366.3 397 53.4
Actinidia29571 Actinidia chinensis HOM05D001663 ORTHO05D005717 3.8e-98 362.8 444 48.2
AL6G42350 Arabidopsis lyrata HOM05D001663 ORTHO05D005717 9.3e-97 358.2 457 47.0
Sc18g0007560 Simmondsia chinensis HOM05D001663 ORTHO05D005717 1.6e-96 357.5 384 51.8
Atru.chr13.1295 Acer truncatum HOM05D001663 ORTHO05D005717 2.7e-96 356.7 374 53.2
SalBow7G1241 Salvia bowleyana HOM05D001663 ORTHO05D005717 2.5e-94 350.1 506 44.1
Lsat_1_v5_gn_6_102021 Lactuca sativa HOM05D001663 ORTHO05D005717 1.3e-93 347.8 468 45.9
Lj6A263G20 Lonicera japonica HOM05D001663 ORTHO05D005717 1.3e-93 347.8 459 46.8
ClCG11G008030 Citrullus lanatus HOM05D001663 ORTHO05D005717 4.8e-93 345.9 464 45.5
AUR62033240 Chenopodium quinoa HOM05D001663 ORTHO05D005717 6.9e-92 342.0 411 49.6
Peaxi162Scf00756g00434 Petunia axillaris HOM05D001663 ORTHO05D005717 1.2e-91 341.3 457 47.0
Cfa015941 Carpinus fangiana HOM05D001663 ORTHO05D005717 4.5e-91 339.3 448 47.8
Dinv13062 Davidia involucrata HOM05D001663 ORTHO05D005717 2.9e-90 336.7 336 53.3
FAN13G3230 Fragaria x ananassa HOM05D001663 ORTHO05D005717 2.7e-88 330.1 378 50.3
BcaC08g47627 Brassica carinata HOM05D001663 ORTHO05D005717 4.6e-88 329.3 205 81.5
SGA_v2.0_scaffold48G18009 Striga asiatica HOM05D001663 ORTHO05D005717 4.6e-88 329.3 451 46.1
Hund26324 Selenicereus undatus HOM05D001663 ORTHO05D005717 1.1e-84 318.2 366 51.1
BraA09t38581Z Brassica rapa HOM05D001663 ORTHO05D005717 4.2e-81 306.2 559 37.7
ATR0564G349 Amborella trichopoda HOM05D001663 ORTHO05D005717 3.9e-79 299.7 470 41.1
CDE05G2350 Ceratophyllum demersum HOM05D001663 ORTHO05D005717 8.2e-77 292.0 319 51.7
Gohir.A05G268300 Gossypium hirsutum HOM05D001663 ORTHO05D005717 9.1e-76 288.5 286 57.3
HPP92_009232 Vanilla planifolia HOM05D001663 ORTHO05D005717 1.1e-73 281.6 370 44.6
MBI02_g34272_MAGBIO Magnolia biondii HOM05D001663 ORTHO05D005717 3.7e-69 266.5 289 52.2
AUR62021323 Chenopodium quinoa HOM05D001663 ORTHO05D005717 5.0e-66 256.1 457 39.8
Oeu035400.3 Olea europaea HOM05D001663 ORTHO05D005717 1.5e-65 254.6 563 34.5
Os07g0626300 Oryza sativa ssp. japonica HOM05D001663 ORTHO05D005717 1.5e-62 244.6 406 39.7
Zm00001eb109770 Zea mays HOM05D001663 ORTHO05D005717 2.0e-62 244.2 406 37.9
arahy.Tifrunner.gnm1.ann1.ZLN6KV Arachis hypogaea HOM05D001663 ORTHO05D005717 1.0e-58 231.9 237 52.3
VMungo0647G1200 Vigna mungo HOM05D001663 ORTHO05D005717 6.5e-58 229.2 225 53.8
unitig_747.g21547 Utricularia gibba HOM05D001663 ORTHO05D005717 1.1e-57 228.4 452 36.9
Zm00001eb327970 Zea mays HOM05D001663 ORTHO05D005717 1.2e-56 224.9 425 36.9
Actinidia33165 Actinidia chinensis HOM05D001663 ORTHO05D005717 1.4e-47 194.9 247 45.7
Pp3c5_11170 Physcomitrium patens HOM05D001663 ORTHO05D005717 5.7e-46 189.5 471 31.8
Mapoly0103s0077 Marchantia polymorpha HOM05D001663 ORTHO05D005717 1.2e-43 181.8 459 32.5
arahy.Tifrunner.gnm1.ann1.8X036G Arachis hypogaea HOM05D001663 ORTHO05D005717 1.0e-42 178.7 229 46.7
SEGI_31098 Sequoiadendron giganteum HOM05D001663 ORTHO05D005717 3.6e-32 143.7 225 40.4
AagrBONN_evm.TU.Sc2ySwM_344.1096 Anthoceros agrestis HOM05D001663 ORTHO05D005717 2.3e-31 141.0 417 30.0
MBI02_g34271_MAGBIO Magnolia biondii HOM05D001663 ORTHO05D005717 3.1e-31 140.6 188 43.6
SEGI_08259 Sequoiadendron giganteum HOM05D001663 ORTHO05D005717 1.6e-24 118.2 209 40.2
CBR_g4197 Chara braunii HOM05D001663 ORTHO05D005717 2.4e-20 104.4 256 30.5
CDE05G1781 Ceratophyllum demersum HOM05D001663 ORTHO05D005717 2.3e-10 71.2 89 44.9
Cre08.g377600 Chlamydomonas reinhardtii HOM05D001663 ORTHO05D005717 2.6e-06 57.8 61 42.6


User provided reference genes

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