Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G37770 Arabidopsis lyrata HOM05D006378 ORTHO05D007959 0.0e+00 1721.8 856 100.0
AT1G77550 Arabidopsis thaliana HOM05D006378 ORTHO05D007959 0.0e+00 1626.3 858 93.4
Carub.0002s2445 Capsella rubella HOM05D006378 ORTHO05D007959 0.0e+00 1614.0 858 92.0
Sp7g06720 Schrenkiella parvula HOM05D006378 ORTHO05D007959 0.0e+00 1516.1 862 85.3
Thhalv10003638m.g Eutrema salsugineum HOM05D006378 ORTHO05D007959 0.0e+00 1515.0 867 85.5
BcaB06g26949 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1507.3 863 84.7
C04p44250 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1498.4 863 83.7
BolC4t25998H Brassica oleracea HOM05D006378 ORTHO05D007959 0.0e+00 1498.0 863 83.7
BcaC02g09569 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1496.9 863 83.5
BraA04t16723Z Brassica rapa HOM05D006378 ORTHO05D007959 0.0e+00 1492.2 863 83.7
A04p10600 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1491.5 863 83.7
THA.LOC104826591 Tarenaya hassleriana HOM05D006378 ORTHO05D007959 0.0e+00 1435.6 861 79.9
Aa31LG2G20840 Aethionema arabicum HOM05D006378 ORTHO05D007959 0.0e+00 1423.3 861 80.7
CARHR071080 Cardamine hirsuta HOM05D006378 ORTHO05D007959 0.0e+00 1306.6 690 91.0
Cpa.g.sc28.38 Carica papaya HOM05D006378 ORTHO05D007959 0.0e+00 1303.5 864 71.6
Potri.006G141900 Populus trichocarpa HOM05D006378 ORTHO05D007959 0.0e+00 1270.8 870 69.8
Manes.03G040400 Manihot esculenta HOM05D006378 ORTHO05D007959 0.0e+00 1264.2 866 70.6
Ciclev10007418m.g Citrus clementina HOM05D006378 ORTHO05D007959 0.0e+00 1261.9 868 69.7
Sabra06G0111000 Salix brachista HOM05D006378 ORTHO05D007959 0.0e+00 1255.0 870 69.1
Thecc.09G076800 Theobroma cacao HOM05D006378 ORTHO05D007959 0.0e+00 1246.1 861 68.9
Duzib168G0703 Durio zibethinus HOM05D006378 ORTHO05D007959 0.0e+00 1245.7 861 69.5
Gohir.A06G076500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1244.2 862 69.1
vmacro06342 Vaccinium macrocarpon HOM05D006378 ORTHO05D007959 0.0e+00 1241.5 867 68.1
CSS0003361 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1241.1 859 69.0
Gohir.D06G075500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1241.1 862 68.8
CSS0014220 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1239.6 859 69.0
MELO3C015521.2 Cucumis melo HOM05D006378 ORTHO05D007959 0.0e+00 1237.2 868 69.1
Rhsim03G0227500 Rhododendron simsii HOM05D006378 ORTHO05D007959 0.0e+00 1236.5 867 67.9
Gorai.010G088400 Gossypium raimondii HOM05D006378 ORTHO05D007959 0.0e+00 1235.7 862 68.6
CsaV3_1G041050 Cucumis sativus L. HOM05D006378 ORTHO05D007959 0.0e+00 1231.5 872 68.8
TWI34G0472 Tripterygium wilfordii HOM05D006378 ORTHO05D007959 0.0e+00 1222.2 858 68.3
Hma1.2p1_0179F.1_g079520 Hydrangea macrophylla HOM05D006378 ORTHO05D007959 0.0e+00 1221.8 874 67.6
QL11p000773 Quercus lobata HOM05D006378 ORTHO05D007959 0.0e+00 1221.8 868 68.0
Sc08g0008890 Simmondsia chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1219.1 864 67.7
Cfa002988 Carpinus fangiana HOM05D006378 ORTHO05D007959 0.0e+00 1218.0 860 68.0
GSVIVG01015082001 Vitis vinifera HOM05D006378 ORTHO05D007959 0.0e+00 1217.2 864 67.8
ClCG03G015080 Citrullus lanatus HOM05D006378 ORTHO05D007959 0.0e+00 1215.7 877 66.1
TAR383G0342 Trochodendron aralioides HOM05D006378 ORTHO05D007959 0.0e+00 1215.7 869 67.7
Eucgr.C03329 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1212.6 866 67.0
TPR.G28586 Trifolium pratense HOM05D006378 ORTHO05D007959 0.0e+00 1208.0 867 67.0
Cc06_g12180 Coffea canephora HOM05D006378 ORTHO05D007959 0.0e+00 1206.4 867 66.3
Eucgr.C03264 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1204.9 866 66.7
Sed0026053 Sechium edule HOM05D006378 ORTHO05D007959 0.0e+00 1203.3 871 66.7
Medtr2g041640 Medicago truncatula HOM05D006378 ORTHO05D007959 0.0e+00 1201.4 865 67.5
Prupe.7G198800 Prunus persica HOM05D006378 ORTHO05D007959 0.0e+00 1200.7 865 66.8
Lalb_Chr08g0232591 Lupinus albus HOM05D006378 ORTHO05D007959 0.0e+00 1199.9 866 66.2
Migut.J00925 Erythranthe guttata HOM05D006378 ORTHO05D007959 0.0e+00 1198.0 861 66.1
Ca_02206_v3 Cicer arietinum L. HOM05D006378 ORTHO05D007959 0.0e+00 1196.0 866 66.9
MSTRG.19459 Avicennia marina HOM05D006378 ORTHO05D007959 0.0e+00 1195.6 860 65.6
CANSAT56G1041 Cannabis sativa HOM05D006378 ORTHO05D007959 0.0e+00 1195.3 864 66.6
PGR044G1219 Punica granatum HOM05D006378 ORTHO05D007959 0.0e+00 1194.9 873 66.1
VMungo1309G1044 Vigna mungo HOM05D006378 ORTHO05D007959 0.0e+00 1194.5 859 66.8
Hund08780 Selenicereus undatus HOM05D006378 ORTHO05D007959 0.0e+00 1193.3 866 67.0
Nitab4.5_0009436g0010 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1189.9 867 66.1
Dinv42394 Davidia involucrata HOM05D006378 ORTHO05D007959 0.0e+00 1188.7 867 66.4
Psat1g134280 Pisum sativum HOM05D006378 ORTHO05D007959 0.0e+00 1188.3 859 66.6
RcHm_v2.0_Chr2g0094931 Rosa chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1187.6 862 66.0
Glyma.15G177600 Glycine max HOM05D006378 ORTHO05D007959 0.0e+00 1187.2 863 65.7
Nitab4.5_0000343g0150 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1186.4 866 65.8
MD15G1217600 Malus domestica HOM05D006378 ORTHO05D007959 0.0e+00 1185.6 865 66.1
Lj6g0025012 Lotus japonicus HOM05D006378 ORTHO05D007959 0.0e+00 1184.9 859 66.7
Oeu035912.1 Olea europaea HOM05D006378 ORTHO05D007959 0.0e+00 1182.5 859 65.4
Haze_26013 Corylus avellana HOM05D006378 ORTHO05D007959 0.0e+00 1181.4 865 66.1
SGA_v2.0_scaffold91G28112 Striga asiatica HOM05D006378 ORTHO05D007959 0.0e+00 1179.9 861 65.9
Phvul.009G227300 Phaseolus vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1179.1 858 66.8
Aqoxy7G04130 Aquilegia oxysepala HOM05D006378 ORTHO05D007959 0.0e+00 1177.5 871 65.4
Sopen07g021350 Solanum pennellii HOM05D006378 ORTHO05D007959 0.0e+00 1175.6 864 65.9
FAN26G1418 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1171.8 863 64.7
EL10Ac8g19061 Beta vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1168.3 866 65.8
FAN26G3001 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1167.1 863 64.5
Nn8g38637 Nelumbo nucifera HOM05D006378 ORTHO05D007959 0.0e+00 1166.8 866 65.5
HanXRQChr06g0178331 Helianthus annuus HOM05D006378 ORTHO05D007959 0.0e+00 1166.4 866 64.9
AUR62025249 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1165.6 885 64.6
AUR62028935 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1165.6 877 65.2
Solyc07g041870.3 Solanum lycopersicum HOM05D006378 ORTHO05D007959 0.0e+00 1163.7 864 65.2
SalBow6G1560 Salvia bowleyana HOM05D006378 ORTHO05D007959 0.0e+00 1162.5 864 64.6
Lj7C687T7 Lonicera japonica HOM05D006378 ORTHO05D007959 0.0e+00 1161.4 873 65.3
Ah.09g231620 Amaranthus hybridus HOM05D006378 ORTHO05D007959 0.0e+00 1160.6 869 65.0
FAN19G1878 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1160.2 885 63.1
arahy.Tifrunner.gnm1.ann1.LZ43MP Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1159.1 861 65.2
DCAR_011949 Daucus carota HOM05D006378 ORTHO05D007959 0.0e+00 1158.3 869 63.9
PGSC0003DMG400019029 Solanum tuberosum HOM05D006378 ORTHO05D007959 0.0e+00 1156.7 864 65.2
arahy.Tifrunner.gnm1.ann1.CBKZ0V Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1151.3 858 64.9
Lsat_1_v5_gn_8_86460 Lactuca sativa HOM05D006378 ORTHO05D007959 0.0e+00 1149.0 863 64.4
MBI19_g16222_MAGBIO Magnolia biondii HOM05D006378 ORTHO05D007959 0.0e+00 1147.9 869 64.2
PSO135G0915 Papaver somniferum HOM05D006378 ORTHO05D007959 0.0e+00 1146.0 875 62.5
ECA236G3597 Erigeron canadensis HOM05D006378 ORTHO05D007959 0.0e+00 1144.4 866 63.2
Peaxi162Scf00127g01816 Petunia axillaris HOM05D006378 ORTHO05D007959 0.0e+00 1110.5 862 63.2
Os03g0179000 Oryza sativa ssp. japonica HOM05D006378 ORTHO05D007959 0.0e+00 1087.4 866 60.3
CAN.G62.5 Capsicum annuum HOM05D006378 ORTHO05D007959 0.0e+00 1085.5 828 63.8
HPP92_002164 Vanilla planifolia HOM05D006378 ORTHO05D007959 3.7e-309 1064.7 841 62.9
CiPaw.03G206400 Carya illinoinensis HOM05D006378 ORTHO05D007959 3.4e-302 1041.6 744 67.7
ATR0598G254 Amborella trichopoda HOM05D006378 ORTHO05D007959 4.2e-300 1034.6 857 58.5
Atru.chr7.1707 Acer truncatum HOM05D006378 ORTHO05D007959 3.0e-298 1028.5 647 74.2
COL.COLO4_18097 Corchorus olitorius HOM05D006378 ORTHO05D007959 6.2e-296 1020.8 859 59.5
FvH4_1g08650 Fragaria vesca HOM05D006378 ORTHO05D007959 7.1e-292 1007.3 692 67.9
unitig_578.g15677 Utricularia gibba HOM05D006378 ORTHO05D007959 9.3e-292 1006.9 859 57.2
Mapoly0113s0055 Marchantia polymorpha HOM05D006378 ORTHO05D007959 9.3e-276 953.7 859 53.8
AagrBONN_evm.TU.Sc2ySwM_117.2900 Anthoceros agrestis HOM05D006378 ORTHO05D007959 1.1e-273 946.8 868 52.5
SMO174G0008 Selaginella moellendorffii HOM05D006378 ORTHO05D007959 4.1e-271 938.3 855 54.6
Pp3c6_19960 Physcomitrium patens HOM05D006378 ORTHO05D007959 2.2e-261 906.0 862 50.8
CBR_g12041 Chara braunii HOM05D006378 ORTHO05D007959 2.3e-197 693.3 746 47.9
Actinidia38480 Actinidia chinensis HOM05D006378 ORTHO05D007959 5.1e-157 559.3 389 68.9
Zm00001eb401890 Zea mays HOM05D006378 ORTHO05D007959 1.3e-144 518.1 473 54.8
SEGI_03485 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 8.5e-136 488.8 423 59.1
FAN28G1488 Fragaria x ananassa HOM05D006378 ORTHO05D007959 8.0e-110 402.5 358 56.7
CAN.G81.12 Capsicum annuum HOM05D006378 ORTHO05D007959 3.4e-76 290.8 275 54.9
SEGI_37917 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 3.6e-62 244.2 169 68.0
CAN.G81.10 Capsicum annuum HOM05D006378 ORTHO05D007959 3.1e-61 241.1 205 58.0
Psat7g020000 Pisum sativum HOM05D006378 ORTHO05D007959 2.6e-44 184.9 161 58.4
CAN.G81.11 Capsicum annuum HOM05D006378 ORTHO05D007959 2.3e-40 171.8 195 48.2
CDE05G1577 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 1.3e-38 166.0 171 49.1
CDE05G1890 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 1.9e-34 152.1 217 40.1
SHI02337 Sapria himalayana HOM05D006378 ORTHO05D007959 1.0e-27 129.8 149 47.7
Actinidia29933 Actinidia chinensis HOM05D006378 ORTHO05D007959 1.6e-25 122.5 85 69.4
RcHm_v2.0_Chr2g0095081 Rosa chinensis HOM05D006378 ORTHO05D007959 6.1e-25 120.6 86 68.6
RcHm_v2.0_Chr2g0095091 Rosa chinensis HOM05D006378 ORTHO05D007959 4.4e-23 114.4 76 68.4
SHI02335 Sapria himalayana HOM05D006378 ORTHO05D007959 4.1e-21 107.8 90 58.9
RcHm_v2.0_Chr2g0095101 Rosa chinensis HOM05D006378 ORTHO05D007959 1.7e-19 102.4 88 55.7
Actinidia29932 Actinidia chinensis HOM05D006378 ORTHO05D007959 2.2e-19 102.1 120 47.5
SHI02336 Sapria himalayana HOM05D006378 ORTHO05D007959 6.5e-19 100.5 112 53.6
Cre06.g300250 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 2.2e-14 85.5 197 26.9
Mapoly0012s0012 Marchantia polymorpha HOM05D008676 ORTHO05D010936 1.1e-13 83.2 327 26.3
CBR_g54068 Chara braunii HOM05D008676 ORTHO05D010936 2.0e-12 79.0 240 27.1
AagrBONN_evm.TU.Sc2ySwM_228.857 Anthoceros agrestis HOM05D008676 ORTHO05D010936 4.5e-12 77.8 314 25.2
SMO337G0080 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 4.5e-12 77.8 305 25.9
Pp3c1_16240 Physcomitrium patens HOM05D008676 ORTHO05D010936 5.0e-11 74.3 334 24.3
Cre17.g699500 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 6.5e-11 73.9 329 24.6
MCO11G220 Micromonas commoda HOM05D008676 ORTHO05D010936 6.5e-11 73.9 297 22.9
MCO03G450 Micromonas commoda HOM05D008676 ORTHO05D010936 1.1e-10 73.2 304 22.7
SHI02338 Sapria himalayana HOM05D006378 ORTHO05D007959 1.1e-10 73.2 65 56.9
SMO117G0188 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 1.4e-08 66.2 300 24.0
PRCOL_00004385 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 2.3e-08 65.5 367 21.0
MCO05G481 Micromonas commoda HOM05D008676 ORTHO05D010936 5.2e-08 64.3 289 25.6
SMO348G0088 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 6.7e-08 63.9 301 24.9
PRCOL_00007033 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 8.8e-08 63.5 312 22.8
SHI02339 Sapria himalayana HOM05D006378 ORTHO05D007959 1.2e-07 63.2 94 40.4
CBR_g51027 Chara braunii HOM05D008676 ORTHO05D010936 2.0e-07 62.4 230 26.5
AagrBONN_evm.TU.Sc2ySwM_369.291 Anthoceros agrestis HOM05D008676 ORTHO05D010936 3.3e-07 61.6 174 28.2
Actinidia29934 Actinidia chinensis HOM05D006378 ORTHO05D007959 7.5e-07 60.5 32 75.0


User provided reference genes

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