Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G37750 Arabidopsis lyrata HOM05D006879 ORTHO05D008452 8.6e-60 233.4 115 100.0
AT1G77540 Arabidopsis thaliana HOM05D006879 ORTHO05D008452 1.8e-57 225.7 115 94.8
Thhalv10019334m.g Eutrema salsugineum HOM05D006879 ORTHO05D008452 3.9e-52 208.0 114 91.2
Sp5g32720 Schrenkiella parvula HOM05D006879 ORTHO05D008452 1.9e-51 205.7 115 87.0
BcaB02g07111 Brassica carinata HOM05D006879 ORTHO05D008452 2.4e-49 198.7 112 87.5
CARHR071070 Cardamine hirsuta HOM05D006879 ORTHO05D008452 5.3e-49 197.6 115 84.3
C06p31190 Brassica napus HOM05D006879 ORTHO05D008452 1.5e-48 196.1 115 84.3
BraA07t30441Z Brassica rapa HOM05D006879 ORTHO05D008452 1.5e-48 196.1 115 84.3
BcaC08g45472 Brassica carinata HOM05D006879 ORTHO05D008452 2.0e-48 195.7 115 83.5
BolC6t38260H Brassica oleracea HOM05D006879 ORTHO05D008452 2.0e-48 195.7 115 83.5
A07p27940 Brassica napus HOM05D006879 ORTHO05D008452 4.4e-48 194.5 115 83.5
Carub.0002s2444 Capsella rubella HOM05D006879 ORTHO05D008452 8.4e-47 190.3 104 89.4
Thhalv10009164m.g Eutrema salsugineum HOM05D006879 ORTHO05D008452 2.5e-43 178.7 107 82.2
Aa31LG4G7630 Aethionema arabicum HOM05D006879 ORTHO05D008452 4.3e-43 177.9 115 75.7
BcaC05g26099 Brassica carinata HOM05D006879 ORTHO05D008452 9.6e-43 176.8 108 81.5
Sp1g19330 Schrenkiella parvula HOM05D006879 ORTHO05D008452 1.3e-42 176.4 107 80.4
Aa31LG7G5750 Aethionema arabicum HOM05D006879 ORTHO05D008452 3.6e-42 174.9 107 78.5
BcaB07g32176 Brassica carinata HOM05D006879 ORTHO05D008452 3.1e-41 171.8 108 79.6
BolC5t30777H Brassica oleracea HOM05D006879 ORTHO05D008452 4.0e-41 171.4 108 79.6
A06p17880 Brassica napus HOM05D006879 ORTHO05D008452 1.5e-40 169.5 108 79.6
BraA06t24878Z Brassica rapa HOM05D006879 ORTHO05D008452 1.5e-40 169.5 108 79.6
AT1G21770 Arabidopsis thaliana HOM05D006879 ORTHO05D008452 3.4e-40 168.3 96 81.2
C05p20780 Brassica napus HOM05D006879 ORTHO05D008452 3.4e-40 168.3 108 79.6
AL1G34970 Arabidopsis lyrata HOM05D006879 ORTHO05D008452 4.5e-40 167.9 96 81.2
Carub.0001s2123 Capsella rubella HOM05D006879 ORTHO05D008452 5.8e-40 167.5 106 76.4
Manes.02G164300 Manihot esculenta HOM05D006879 ORTHO05D008452 9.9e-40 166.8 112 71.4
Potri.005G178501 Populus trichocarpa HOM05D006879 ORTHO05D008452 2.9e-39 165.2 114 71.9
Duzib041G0788 Durio zibethinus HOM05D006879 ORTHO05D008452 4.9e-39 164.5 111 68.5
Ciclev10002899m.g Citrus clementina HOM05D006879 ORTHO05D008452 6.4e-39 164.1 105 73.3
Cfa016025 Carpinus fangiana HOM05D006879 ORTHO05D008452 8.4e-39 163.7 102 75.5
Prupe.1G494800 Prunus persica HOM05D006879 ORTHO05D008452 8.4e-39 163.7 112 73.2
QL09p034330 Quercus lobata HOM05D006879 ORTHO05D008452 1.9e-38 162.5 114 67.5
QL09p034374 Quercus lobata HOM05D006879 ORTHO05D008452 1.9e-38 162.5 114 67.5
Solyc08g067800.3 Solanum lycopersicum HOM05D006879 ORTHO05D008452 2.4e-38 162.2 104 71.2
Sopen08g021740 Solanum pennellii HOM05D006879 ORTHO05D008452 2.4e-38 162.2 104 71.2
CSS0011792 Camellia sinensis var. sinensis HOM05D006879 ORTHO05D008452 4.2e-38 161.4 110 67.3
Haze_00431 Corylus avellana HOM05D000586 ORTHO05D008452 5.5e-38 161.0 100 76.0
Thecc.08G126700 Theobroma cacao HOM05D006879 ORTHO05D008452 5.5e-38 161.0 101 72.3
Gorai.002G222300 Gossypium raimondii HOM05D006879 ORTHO05D008452 7.1e-38 160.6 111 67.6
MD15G1347100 Malus domestica HOM05D006879 ORTHO05D008452 7.1e-38 160.6 118 69.5
Gohir.D01G180300 Gossypium hirsutum HOM05D006879 ORTHO05D008452 9.3e-38 160.2 111 67.6
FvH4_2g27080 Fragaria vesca HOM05D006879 ORTHO05D008452 2.1e-37 159.1 99 75.8
Atru.chr13.1490 Acer truncatum HOM05D006879 ORTHO05D008452 2.7e-37 158.7 111 69.4
Gohir.A01G189200 Gossypium hirsutum HOM05D006879 ORTHO05D008452 2.7e-37 158.7 110 66.4
CiPaw.06G031600 Carya illinoinensis HOM05D006879 ORTHO05D008452 3.5e-37 158.3 112 66.1
Nn5g28321 Nelumbo nucifera HOM05D006879 ORTHO05D008452 3.5e-37 158.3 104 67.3
THA.LOC104813659 Tarenaya hassleriana HOM05D006879 ORTHO05D008452 3.5e-37 158.3 101 76.2
Aqoxy6G00233 Aquilegia oxysepala HOM05D006879 ORTHO05D008452 4.6e-37 157.9 111 65.8
Cc10_g12010 Coffea canephora HOM05D006879 ORTHO05D008452 4.6e-37 157.9 111 69.4
CsaV3_4G028290 Cucumis sativus L. HOM05D006879 ORTHO05D008452 7.9e-37 157.1 105 64.8
FAN24G0949 Fragaria x ananassa HOM05D006879 ORTHO05D008452 7.9e-37 157.1 99 74.7
FAN20G0093 Fragaria x ananassa HOM05D006879 ORTHO05D008452 1.0e-36 156.8 99 74.7
arahy.Tifrunner.gnm1.ann1.0SZ2NS Arachis hypogaea HOM05D006879 ORTHO05D008452 1.3e-36 156.4 91 75.8
arahy.Tifrunner.gnm1.ann1.61DA9N Arachis hypogaea HOM05D006879 ORTHO05D008452 1.3e-36 156.4 91 75.8
arahy.Tifrunner.gnm1.ann1.GV74HV Arachis hypogaea HOM05D006879 ORTHO05D008452 1.3e-36 156.4 91 75.8
MELO3C010476.2 Cucumis melo HOM05D006879 ORTHO05D008452 1.3e-36 156.4 114 62.3
RcHm_v2.0_Chr6g0295961 Rosa chinensis HOM05D006879 ORTHO05D008452 1.3e-36 156.4 110 69.1
COL.COLO4_03398 Corchorus olitorius HOM05D006879 ORTHO05D008452 2.3e-36 155.6 101 71.3
Actinidia03466 Actinidia chinensis HOM05D006879 ORTHO05D008452 3.0e-36 155.2 101 71.3
TWI32G0821 Tripterygium wilfordii HOM05D006879 ORTHO05D008452 3.0e-36 155.2 106 71.7
HanXRQChr03g0088981 Helianthus annuus HOM05D006879 ORTHO05D008452 3.9e-36 154.8 110 66.4
Lsat_1_v5_gn_6_93360 Lactuca sativa HOM05D006879 ORTHO05D008452 3.9e-36 154.8 98 71.4
CDE07G0981 Ceratophyllum demersum HOM05D006879 ORTHO05D008452 5.1e-36 154.5 102 69.6
Dinv07211 Davidia involucrata HOM05D006879 ORTHO05D008452 5.1e-36 154.5 108 65.7
Lj1g0005641 Lotus japonicus HOM05D006879 ORTHO05D008452 8.7e-36 153.7 112 65.2
VMungo0647G0471 Vigna mungo HOM05D006879 ORTHO05D008452 8.7e-36 153.7 97 75.3
Phvul.008G160300 Phaseolus vulgaris HOM05D006879 ORTHO05D008452 1.1e-35 153.3 97 74.2
CAN.G21.5 Capsicum annuum HOM05D006879 ORTHO05D008452 1.5e-35 152.9 108 66.7
Hund17297 Selenicereus undatus HOM05D006879 ORTHO05D008452 1.5e-35 152.9 103 68.0
Dinv27305 Davidia involucrata HOM05D006879 ORTHO05D008452 1.9e-35 152.5 110 63.6
Hma1.2p1_0054F.1_g031040 Hydrangea macrophylla HOM05D006879 ORTHO05D008452 1.9e-35 152.5 111 63.1
PGR083G2398 Punica granatum HOM05D006879 ORTHO05D008452 1.9e-35 152.5 115 62.6
Nitab4.5_0005583g0080 Nicotiana tabacum HOM05D006879 ORTHO05D008452 2.5e-35 152.1 101 72.3
Sed0023358 Sechium edule HOM05D006879 ORTHO05D008452 3.3e-35 151.8 102 65.7
Medtr3g088570 Medicago truncatula HOM05D006879 ORTHO05D008452 4.3e-35 151.4 99 69.7
Glyma.14G151700 Glycine max HOM05D006879 ORTHO05D008452 5.6e-35 151.0 100 70.0
Ca_28182_v3 Cicer arietinum L. HOM05D006879 ORTHO05D008452 7.4e-35 150.6 97 70.1
Psat5g086200 Pisum sativum HOM05D006879 ORTHO05D008452 1.3e-34 149.8 99 71.7
AUR62019072 Chenopodium quinoa HOM05D006879 ORTHO05D008452 2.1e-34 149.1 109 65.1
Sc02g0005010 Simmondsia chinensis HOM05D006879 ORTHO05D008452 2.1e-34 149.1 100 67.0
MSTRG.25382 Avicennia marina HOM05D006879 ORTHO05D008452 2.8e-34 148.7 107 66.4
ClCG11G015720 Citrullus lanatus HOM05D006879 ORTHO05D008452 2.8e-34 148.7 123 56.1
TAR628G0734 Trochodendron aralioides HOM05D006879 ORTHO05D008452 2.8e-34 148.7 92 71.7
AUR62014329 Chenopodium quinoa HOM05D006879 ORTHO05D008452 3.7e-34 148.3 116 62.9
Eucgr.F03793 Eucalyptus grandis HOM05D006879 ORTHO05D008452 4.8e-34 147.9 113 61.9
Lalb_Chr11g0066061 Lupinus albus HOM05D006879 ORTHO05D008452 4.8e-34 147.9 118 61.0
Nitab4.5_0004334g0040 Nicotiana tabacum HOM05D006879 ORTHO05D008452 4.8e-34 147.9 101 69.3
ATR0584G146 Amborella trichopoda HOM05D006879 ORTHO05D008452 4.0e-33 144.8 91 72.5
EL10Ac1g01022 Beta vulgaris HOM05D006879 ORTHO05D008452 4.0e-33 144.8 107 64.5
ECA240G3722 Erigeron canadensis HOM05D006879 ORTHO05D008452 6.9e-33 144.1 98 67.3
CANSAT56G2034 Cannabis sativa HOM05D006879 ORTHO05D008452 7.6e-32 140.6 116 59.5
PSO528G0112 Papaver somniferum HOM05D006879 ORTHO05D008452 1.0e-31 140.2 115 58.3
Migut.C01128 Erythranthe guttata HOM05D006879 ORTHO05D008452 3.8e-31 138.3 104 61.5
FAN15G3590 Fragaria x ananassa HOM05D006879 ORTHO05D008452 3.2e-30 135.2 134 54.5
PSO170G0506 Papaver somniferum HOM05D006879 ORTHO05D008452 4.2e-30 134.8 115 58.3
SGA_v2.0_scaffold52G18964 Striga asiatica HOM05D006879 ORTHO05D008452 8.7e-28 127.1 110 56.4
Cpa.g.sc418.6 Carica papaya HOM05D006879 ORTHO05D008452 1.5e-27 126.3 82 70.7
TPR.G20905 Trifolium pratense HOM05D006879 ORTHO05D008452 1.3e-26 123.2 78 73.1
vmacro00838 Vaccinium macrocarpon HOM05D006879 ORTHO05D008452 1.3e-26 123.2 86 69.8
CAN.G21.4 Capsicum annuum HOM05D006879 ORTHO05D008452 2.1e-26 122.5 106 51.9
RhsimUnG0092300 Rhododendron simsii HOM05D000586 ORTHO05D008452 4.1e-25 118.2 77 71.4
GSVIVG01008857001 Vitis vinifera HOM05D006879 ORTHO05D008452 1.2e-24 116.7 68 80.9
Ah.05g171050 Amaranthus hybridus HOM05D006879 ORTHO05D008452 2.9e-23 112.1 80 66.2
Oeu059437.1 Olea europaea HOM05D006879 ORTHO05D008452 1.4e-22 109.8 68 70.6
Zm00001eb082730 Zea mays HOM05D006879 ORTHO05D008452 1.4e-22 109.8 116 48.3
Pp3c12_9490 Physcomitrium patens HOM05D006879 ORTHO05D008452 1.2e-21 106.7 110 50.0
Peaxi162Scf00332g00015 Petunia axillaris HOM05D006879 ORTHO05D008452 6.1e-21 104.4 77 64.9
HanXRQChr01g0005251 Helianthus annuus HOM05D006879 ORTHO05D008452 2.3e-20 102.4 73 63.0
HanXRQChr04g0101301 Helianthus annuus HOM05D006879 ORTHO05D008452 6.7e-20 100.9 71 66.2
SMO146G0286 Selaginella moellendorffii HOM05D006879 ORTHO05D008452 1.1e-19 100.1 92 50.0
SEGI_19819 Sequoiadendron giganteum HOM05D006879 ORTHO05D008452 9.7e-19 97.1 85 55.3
Mapoly0075s0062 Marchantia polymorpha HOM05D006879 ORTHO05D008452 9.0e-17 90.5 114 38.6
AagrBONN_evm.TU.Sc2ySwM_117.2168 Anthoceros agrestis HOM05D006879 ORTHO05D008452 2.6e-16 89.0 103 43.7
Os04g0431300 Oryza sativa ssp. japonica HOM05D006879 ORTHO05D008452 1.0e-15 87.0 62 61.3
Eucgr.H03927 Eucalyptus grandis HOM05D006879 ORTHO05D008452 1.8e-12 76.3 103 42.7
CBR_g36233 Chara braunii HOM05D006879 ORTHO05D008452 6.7e-12 74.3 153 30.7
Eucgr.H03925 Eucalyptus grandis HOM05D006879 ORTHO05D008452 5.7e-11 71.2 63 50.8
HanXRQChr09g0244451 Helianthus annuus HOM05D006879 ORTHO05D008452 7.4e-11 70.9 44 70.5
MCO09G076 Micromonas commoda HOM05D006879 ORTHO05D008452 2.9e-07 58.9 67 49.3


User provided reference genes

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