Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G37600 Arabidopsis lyrata HOM05D007332 ORTHO05D009297 9.4e-130 466.8 233 100.0
AT1G77400 Arabidopsis thaliana HOM05D007332 ORTHO05D009297 8.5e-123 443.7 233 95.3
Carub.0002s2429 Capsella rubella HOM05D007332 ORTHO05D009297 3.0e-112 408.7 238 89.9
CARHR070880 Cardamine hirsuta HOM05D007332 ORTHO05D009297 1.2e-100 370.2 240 84.2
BcaB03g15951 Brassica carinata HOM05D007332 ORTHO05D009297 1.9e-93 346.3 236 79.7
BolC6t40174H Brassica oleracea HOM05D007332 ORTHO05D009297 7.0e-93 344.4 238 79.0
BraA07t31813Z Brassica rapa HOM05D007332 ORTHO05D009297 1.6e-92 343.2 238 78.6
Sp5g32550 Schrenkiella parvula HOM05D007332 ORTHO05D009297 1.6e-92 343.2 233 77.7
A07p42920 Brassica napus HOM05D007332 ORTHO05D009297 4.6e-92 341.7 242 76.9
BcaC08g47611 Brassica carinata HOM05D007332 ORTHO05D009297 1.0e-91 340.5 235 78.7
C06p51540 Brassica napus HOM05D007332 ORTHO05D009297 1.9e-90 336.3 238 77.7
Thhalv10019445m.g Eutrema salsugineum HOM05D007332 ORTHO05D009297 1.2e-87 327.0 233 76.8
BcaC03g15733 Brassica carinata HOM05D007332 ORTHO05D009297 5.4e-85 318.2 236 76.3
BolC2t09481H Brassica oleracea HOM05D007332 ORTHO05D009297 2.5e-82 309.3 231 75.8
C02p17420 Brassica napus HOM05D007332 ORTHO05D009297 4.7e-81 305.1 235 73.6
BolC2t07856H Brassica oleracea HOM05D007332 ORTHO05D009297 4.7e-81 305.1 235 73.6
Aa31LG4G7420 Aethionema arabicum HOM05D007332 ORTHO05D009297 2.6e-79 299.3 241 70.5
BcaB05g25043 Brassica carinata HOM05D007332 ORTHO05D009297 8.6e-75 284.3 234 70.1
C02p34520 Brassica napus HOM05D007332 ORTHO05D009297 1.2e-71 273.9 217 75.1
BraA02t07143Z Brassica rapa HOM05D007332 ORTHO05D009297 8.7e-67 257.7 217 71.9
BcaC08g47610 Brassica carinata HOM05D007332 ORTHO05D009297 9.6e-66 254.2 237 65.4
THA.LOC104813672 Tarenaya hassleriana HOM05D007332 ORTHO05D009297 2.4e-64 249.6 230 63.9
A02p21250 Brassica napus HOM05D007332 ORTHO05D009297 4.2e-61 238.8 233 63.9
Manes.02G166600 Manihot esculenta HOM05D007332 ORTHO05D009297 3.1e-32 142.9 234 42.3
COL.COLO4_03954 Corchorus olitorius HOM05D007332 ORTHO05D009297 8.5e-30 134.8 231 43.7
Potri.002G080200 Populus trichocarpa HOM05D007332 ORTHO05D009297 1.4e-27 127.5 237 39.7
Atru.chr13.1537 Acer truncatum HOM05D007332 ORTHO05D009297 2.0e-26 123.6 232 40.1
QL09p033201 Quercus lobata HOM05D007332 ORTHO05D009297 9.7e-26 121.3 231 42.0
Ciclev10002610m.g Citrus clementina HOM05D007332 ORTHO05D009297 6.3e-25 118.6 231 39.8
Duzib093G1986 Durio zibethinus HOM05D007332 ORTHO05D009297 1.4e-24 117.5 232 40.1
TWI34G0633 Tripterygium wilfordii HOM05D007332 ORTHO05D009297 1.4e-24 117.5 238 37.8
Gohir.A05G237300 Gossypium hirsutum HOM05D007332 ORTHO05D009297 1.8e-24 117.1 231 40.3
Gohir.D05G239400 Gossypium hirsutum HOM05D007332 ORTHO05D009297 5.3e-24 115.5 231 40.3
Gorai.009G248200 Gossypium raimondii HOM05D007332 ORTHO05D009297 5.3e-24 115.5 231 39.8
Potri.005G181200 Populus trichocarpa HOM05D007332 ORTHO05D009297 1.2e-23 114.4 230 35.7
Sabra02G0062700 Salix brachista HOM05D007332 ORTHO05D009297 1.5e-23 114.0 229 37.1
Nitab4.5_0006720g0020 Nicotiana tabacum HOM05D007332 ORTHO05D009297 2.0e-23 113.6 238 38.2
Cc10_g12430 Coffea canephora HOM05D007332 ORTHO05D009297 4.5e-23 112.5 239 38.5
Duzib116G0046 Durio zibethinus HOM05D007332 ORTHO05D009297 4.5e-23 112.5 229 41.0
CiPaw.15G033700 Carya illinoinensis HOM05D007332 ORTHO05D009297 5.9e-23 112.1 240 40.0
CARHR022050 Cardamine hirsuta HOM05D011160 ORTHO05D013203 1.0e-22 111.3 241 41.1
PGSC0003DMG400024564 Solanum tuberosum HOM05D007332 ORTHO05D009297 2.9e-22 109.8 238 38.2
Nitab4.5_0000111g0100 Nicotiana tabacum HOM05D007332 ORTHO05D009297 3.8e-22 109.4 237 40.5
Solyc03g113480.1 Solanum lycopersicum HOM05D007332 ORTHO05D009297 5.0e-22 109.0 238 38.2
AL1G34860 Arabidopsis lyrata HOM05D011160 ORTHO05D013203 6.5e-22 108.6 214 45.3
Gohir.A06G046800 Gossypium hirsutum HOM05D007332 ORTHO05D009297 1.1e-21 107.8 217 41.0
Sopen03g032530 Solanum pennellii HOM05D007332 ORTHO05D009297 3.2e-21 106.3 240 36.7
Cfa018560 Carpinus fangiana HOM05D007332 ORTHO05D009297 4.2e-21 105.9 230 37.0
DCAR_003566 Daucus carota HOM05D007332 ORTHO05D009297 6.1e-20 102.1 232 35.8
Carub.0001s2113 Capsella rubella HOM05D011160 ORTHO05D013203 1.8e-19 100.5 229 41.5
CAN.G1486.2 Capsicum annuum HOM05D007332 ORTHO05D009297 3.0e-19 99.8 237 37.6
Gorai.010G052700 Gossypium raimondii HOM05D007332 ORTHO05D009297 5.2e-19 99.0 216 38.9
FAN20G0761 Fragaria x ananassa HOM05D007332 ORTHO05D009297 1.1e-18 97.8 237 37.6
Peaxi162Scf00310g00043 Petunia axillaris HOM05D007332 ORTHO05D009297 1.5e-18 97.4 234 36.3
Thecc.08G130400 Theobroma cacao HOM05D007332 ORTHO05D009297 2.0e-18 97.1 228 36.4
Dinv27272 Davidia involucrata HOM05D001470 ORTHO05D006430 2.6e-18 96.7 231 34.2
FAN24G1344 Fragaria x ananassa HOM05D007332 ORTHO05D009297 4.4e-18 95.9 238 37.0
FAN27G1631 Fragaria x ananassa HOM05D007332 ORTHO05D009297 4.4e-18 95.9 235 36.2
Thhalv10009307m.g Eutrema salsugineum HOM05D011160 ORTHO05D013203 5.7e-18 95.5 207 42.5
Lj1g0005314 Lotus japonicus HOM05D007332 ORTHO05D009297 9.7e-18 94.7 227 32.6
FvH4_2g27560 Fragaria vesca HOM05D007332 ORTHO05D009297 2.8e-17 93.2 238 35.7
Hma1.2p1_0542F.1_g174970 Hydrangea macrophylla HOM05D007332 ORTHO05D009297 2.8e-17 93.2 236 36.9
Eucgr.F04333 Eucalyptus grandis HOM05D007332 ORTHO05D009297 3.7e-17 92.8 249 36.5
AT1G21695 Arabidopsis thaliana HOM05D011160 ORTHO05D013203 4.8e-17 92.4 233 40.8
MELO3C010504.2 Cucumis melo HOM05D007332 ORTHO05D009297 4.8e-17 92.4 231 34.2
THA.LOC104800214 Tarenaya hassleriana HOM05D007332 ORTHO05D009297 1.8e-16 90.5 211 37.9
ECA232G0093 Erigeron canadensis HOM05D007332 ORTHO05D009297 2.4e-16 90.1 229 32.3
Sabra05G0137200 Salix brachista HOM05D007332 ORTHO05D009297 2.4e-16 90.1 220 33.2
RcHm_v2.0_Chr6g0296401 Rosa chinensis HOM05D007332 ORTHO05D009297 4.1e-16 89.4 244 36.1
CSS0048102 Camellia sinensis var. sinensis HOM05D007332 ORTHO05D009297 5.3e-16 89.0 236 34.3
SGA_v2.0_scaffold52G18934 Striga asiatica HOM05D007332 ORTHO05D009297 5.3e-16 89.0 232 35.3
MSTRG.1422 Avicennia marina HOM05D007332 ORTHO05D009297 4.5e-15 85.9 231 36.4
ClCG11G015900 Citrullus lanatus HOM05D007332 ORTHO05D009297 4.5e-15 85.9 227 33.0
arahy.Tifrunner.gnm1.ann1.ILK6IZ Arachis hypogaea HOM05D007332 ORTHO05D009297 5.9e-15 85.5 227 33.5
Phvul.009G128000 Phaseolus vulgaris HOM05D007332 ORTHO05D009297 7.7e-15 85.1 226 31.9
PGR044G1395 Punica granatum HOM05D007332 ORTHO05D009297 1.7e-14 84.0 243 34.6
SalBow7G3495 Salvia bowleyana HOM05D007332 ORTHO05D009297 1.7e-14 84.0 228 33.3
Glyma.04G246900 Glycine max HOM05D007332 ORTHO05D009297 2.2e-14 83.6 229 31.4
BcaB07g32166 Brassica carinata HOM05D011160 ORTHO05D013203 8.5e-14 81.6 214 36.9
Psat5g085840 Pisum sativum HOM05D007332 ORTHO05D009297 1.1e-13 81.3 232 32.3
Glyma.06G115900 Glycine max HOM05D007332 ORTHO05D009297 1.5e-13 80.9 237 32.1
CsaV3_4G028070 Cucumis sativus L. HOM05D007332 ORTHO05D009297 7.2e-13 78.6 223 33.2
Sp1g19250 Schrenkiella parvula HOM05D011160 ORTHO05D013203 7.2e-13 78.6 238 36.1
HanXRQChr09g0260291 Helianthus annuus HOM05D007332 ORTHO05D009297 9.4e-13 78.2 234 32.5
TAR381G0705 Trochodendron aralioides HOM05D007332 ORTHO05D009297 9.4e-13 78.2 228 29.8
PGSC0003DMG400006046 Solanum tuberosum HOM05D007332 ORTHO05D009297 1.2e-12 77.8 237 32.5
TPR.G13457 Trifolium pratense HOM05D007332 ORTHO05D009297 1.2e-12 77.8 234 33.8
MD15G1344600 Malus domestica HOM05D007332 ORTHO05D009297 2.1e-12 77.0 235 30.6
A01p18880 Brassica napus HOM05D007332 ORTHO05D009297 2.7e-12 76.6 48 81.2
Lsat_1_v5_gn_4_74261 Lactuca sativa HOM05D007332 ORTHO05D009297 3.6e-12 76.3 233 29.2
Medtr3g088400 Medicago truncatula HOM05D007332 ORTHO05D009297 4.7e-12 75.9 236 32.2
Migut.C01053 Erythranthe guttata HOM05D007332 ORTHO05D009297 6.7e-11 72.0 225 33.3
Nn5g28415 Nelumbo nucifera HOM05D007332 ORTHO05D009297 8.8e-11 71.6 223 30.0
VMungo1309G0081 Vigna mungo HOM05D007332 ORTHO05D009297 8.8e-11 71.6 226 32.3
A06p17780 Brassica napus HOM05D011160 ORTHO05D013203 1.2e-10 71.2 61 62.3
BraA06t24870Z Brassica rapa HOM05D011160 ORTHO05D013203 1.2e-10 71.2 61 62.3
arahy.Tifrunner.gnm1.ann1.34D5TH Arachis hypogaea HOM05D007332 ORTHO05D009297 1.5e-10 70.9 197 32.5
Prupe.1G492300 Prunus persica HOM05D007332 ORTHO05D009297 4.4e-10 69.3 243 30.9
FAN15G1303 Fragaria x ananassa HOM05D007332 ORTHO05D009297 1.3e-09 67.8 212 33.5
BcaC05g26088 Brassica carinata HOM05D011160 ORTHO05D013203 3.7e-09 66.2 61 59.0
C05p20670 Brassica napus HOM05D011160 ORTHO05D013203 3.7e-09 66.2 61 59.0
BolC5t30766H Brassica oleracea HOM05D011160 ORTHO05D013203 3.7e-09 66.2 61 59.0
A07p14960 Brassica napus HOM05D011160 ORTHO05D013203 8.2e-09 65.1 106 47.2
MBI06_g33108_MAGBIO Magnolia biondii HOM05D007332 ORTHO05D009297 1.1e-08 64.7 208 31.2
Actinidia15225 Actinidia chinensis HOM05D007332 ORTHO05D009297 5.3e-08 62.4 83 49.4
arahy.Tifrunner.gnm1.ann1.396V4Q Arachis hypogaea HOM05D007332 ORTHO05D009297 9.1e-08 61.6 199 31.2
BolC7t42731H Brassica oleracea HOM05D011160 ORTHO05D013203 9.1e-08 61.6 221 33.9
BraA07t29242Z Brassica rapa HOM05D011160 ORTHO05D013203 9.1e-08 61.6 215 34.0
C07p22010 Brassica napus HOM05D011160 ORTHO05D013203 1.6e-07 60.8 221 33.9
BcaC06g34900 Brassica carinata HOM05D011160 ORTHO05D013203 3.5e-07 59.7 213 33.8
Nn1g08887 Nelumbo nucifera HOM05D007332 ORTHO05D009297 5.9e-07 58.9 261 29.1
Dinv14654 Davidia involucrata HOM05D007332 ORTHO05D009297 7.7e-07 58.5 225 27.1
BcaB03g14257 Brassica carinata HOM05D011160 ORTHO05D013203 2.9e-06 56.6 205 33.7


User provided reference genes

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