Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G37540 Arabidopsis lyrata HOM05D003210 ORTHO05D000001 4.6e-223 778.1 564 100.0
AT5G65560 Arabidopsis thaliana HOM05D003210 ORTHO05D000001 6.6e-44 183.0 181 53.0
AL8G43160 Arabidopsis lyrata HOM05D003210 ORTHO05D000001 8.6e-44 182.6 181 52.5
Sp2g28660 Schrenkiella parvula HOM05D003210 ORTHO05D000001 1.5e-43 181.8 181 51.9
Carub.0008s2641 Capsella rubella HOM05D003210 ORTHO05D000001 3.1e-41 174.1 197 49.7
BcaC01g02798 Brassica carinata HOM05D003210 ORTHO05D000001 3.4e-40 170.6 182 50.5
C03p60210 Brassica napus HOM05D003210 ORTHO05D000001 3.4e-40 170.6 182 50.5
BolC3t18283H Brassica oleracea HOM05D003210 ORTHO05D000001 3.4e-40 170.6 182 50.5
FvH4_1g06430 Fragaria vesca HOM05D003210 ORTHO05D000001 5.8e-32 143.3 196 39.3
FAN19G0968 Fragaria x ananassa HOM05D003210 ORTHO05D000001 5.8e-32 143.3 196 39.3
RcHm_v2.0_Chr2g0092171 Rosa chinensis HOM05D003210 ORTHO05D000001 7.5e-32 142.9 196 40.3
FAN28G0230 Fragaria x ananassa HOM05D003210 ORTHO05D000001 2.2e-31 141.4 222 38.3
MD08G1245900 Malus domestica HOM05D003210 ORTHO05D000001 6.4e-31 139.8 143 47.6
FAN26G1074 Fragaria x ananassa HOM05D003210 ORTHO05D000001 1.4e-30 138.7 196 38.3
AL7G34260 Arabidopsis lyrata HOM05D003210 ORTHO05D000001 2.1e-29 134.8 741 35.9
BraA06t26165Z Brassica rapa HOM05D003210 ORTHO05D000001 2.7e-29 134.4 182 42.3
A06p32400 Brassica napus HOM05D003210 ORTHO05D000001 1.3e-28 132.1 182 41.8
FvH4_2g11090 Fragaria vesca HOM05D003210 ORTHO05D000001 1.3e-28 132.1 148 42.6
FAN24G1052 Fragaria x ananassa HOM05D003210 ORTHO05D000001 1.3e-28 132.1 148 42.6
Aqoxy6G00832 Aquilegia oxysepala HOM05D003210 ORTHO05D000001 6.6e-28 129.8 151 43.0
MD15G1441200 Malus domestica HOM05D003210 ORTHO05D000001 1.5e-27 128.6 190 38.4
FAN03G0748 Fragaria x ananassa HOM05D003210 ORTHO05D000001 2.5e-27 127.9 155 42.6
RcHm_v2.0_Chr1g0329241 Rosa chinensis HOM05D003210 ORTHO05D000001 2.5e-27 127.9 198 37.4
FvH4_7g04271 Fragaria vesca HOM05D003210 ORTHO05D000001 3.3e-27 127.5 155 43.2
FAN20G1808 Fragaria x ananassa HOM05D003210 ORTHO05D000001 5.6e-27 126.7 234 34.2
Carub.0002s2422 Capsella rubella HOM05D003210 ORTHO05D000001 2.8e-26 124.4 68 85.3
AUR62027713 Chenopodium quinoa HOM05D003210 ORTHO05D000001 3.6e-26 124.0 142 43.0
AUR62039467 Chenopodium quinoa HOM05D003210 ORTHO05D000001 6.2e-26 123.2 142 43.0
Sp7g28540 Schrenkiella parvula HOM05D015591 ORTHO05D000001 1.4e-25 122.1 193 38.3
VMungo1215G2034 Vigna mungo HOM05D003210 ORTHO05D000001 6.8e-25 119.8 244 32.4
Prupe.4G256300 Prunus persica HOM05D003210 ORTHO05D000001 2.2e-23 114.8 127 42.5
TWI53G0425 Tripterygium wilfordii HOM05D003210 ORTHO05D000001 2.2e-23 114.8 192 32.8
CARHR279540 Cardamine hirsuta HOM05D003210 ORTHO05D000001 1.9e-22 111.7 184 37.0
Cpa.g.sc10.84 Carica papaya HOM05D003210 ORTHO05D000001 1.9e-22 111.7 198 33.8
SHI21874 Sapria himalayana HOM05D003210 ORTHO05D000001 7.1e-22 109.8 195 32.3
C03p60250 Brassica napus HOM05D003210 ORTHO05D000001 7.8e-21 106.3 130 46.2
BolC3t18286H Brassica oleracea HOM05D003210 ORTHO05D000001 7.8e-21 106.3 130 46.2
CAN.G674.2 Capsicum annuum HOM05D003210 ORTHO05D000001 1.7e-20 105.1 198 32.3
MD11G1188000 Malus domestica HOM05D003210 ORTHO05D000001 1.7e-20 105.1 106 44.3
Sabra06G0098600 Salix brachista HOM05D003210 ORTHO05D000001 6.6e-20 103.2 273 27.5
Prupe.1G583300 Prunus persica HOM05D003210 ORTHO05D000001 2.5e-19 101.3 102 45.1
FAN26G0660 Fragaria x ananassa HOM05D000020 ORTHO05D000001 4.3e-19 100.5 171 33.3
Peaxi162Scf00370g00062 Petunia axillaris HOM05D003210 ORTHO05D000001 1.6e-18 98.6 91 46.2
SalBow3G1735 Salvia bowleyana HOM05D003210 ORTHO05D000001 2.1e-18 98.2 78 53.8
Potri.006G124900 Populus trichocarpa HOM05D003210 ORTHO05D000001 3.6e-18 97.4 85 52.9
Phvul.008G101600 Phaseolus vulgaris HOM05D003210 ORTHO05D000001 4.7e-18 97.1 153 33.3
QL12p037893 Quercus lobata HOM05D003210 ORTHO05D000001 4.7e-18 97.1 118 43.2
ClCG08G009320 Citrullus lanatus HOM05D003210 ORTHO05D000001 6.2e-18 96.7 79 59.5
Sed0026111 Sechium edule HOM05D003210 ORTHO05D000001 6.2e-18 96.7 72 61.1
C01p08300 Brassica napus HOM05D015591 ORTHO05D000001 8.1e-18 96.3 149 37.6
Manes.12G124600 Manihot esculenta HOM05D003210 ORTHO05D000001 8.1e-18 96.3 77 55.8
BcaC09g51856 Brassica carinata HOM05D015591 ORTHO05D000001 1.1e-17 95.9 149 36.9
A01p07620 Brassica napus HOM05D015591 ORTHO05D000001 1.1e-17 95.9 193 34.2
BolC1t00816H Brassica oleracea HOM05D015591 ORTHO05D000001 1.1e-17 95.9 149 36.9
BraA01t00705Z Brassica rapa HOM05D015591 ORTHO05D000001 1.1e-17 95.9 193 34.2
MELO3C026530.2 Cucumis melo HOM05D003210 ORTHO05D000001 1.1e-17 95.9 72 62.5
CsaV3_6G031450 Cucumis sativus L. HOM05D003210 ORTHO05D000001 2.4e-17 94.7 72 61.1
Migut.H02282 Erythranthe guttata HOM05D003210 ORTHO05D000001 4.0e-17 94.0 83 51.8
Lalb_Chr19g0125341 Lupinus albus HOM05D003210 ORTHO05D000001 5.2e-17 93.6 102 51.0
Haze_03893 Corylus avellana HOM05D003210 ORTHO05D000001 6.8e-17 93.2 74 59.5
Lj3C22T6 Lonicera japonica HOM05D003210 ORTHO05D000001 6.8e-17 93.2 74 58.1
Phvul.002G145400 Phaseolus vulgaris HOM05D003210 ORTHO05D000001 1.2e-16 92.4 86 48.8
Sopen10g032390 Solanum pennellii HOM05D003210 ORTHO05D000001 1.2e-16 92.4 90 44.4
AT1G77340 Arabidopsis thaliana HOM05D003210 ORTHO05D000001 1.5e-16 92.0 51 84.3
Gohir.A12G085200 Gossypium hirsutum HOM05D003210 ORTHO05D000001 1.5e-16 92.0 76 51.3
Psat3g169880 Pisum sativum HOM05D003210 ORTHO05D000001 1.5e-16 92.0 198 29.3
Gorai.008G093300 Gossypium raimondii HOM05D003210 ORTHO05D000001 2.6e-16 91.3 75 50.7
Nitab4.5_0005257g0020 Nicotiana tabacum HOM05D003210 ORTHO05D000001 2.6e-16 91.3 87 44.8
Solyc10g081880.3 Solanum lycopersicum HOM05D003210 ORTHO05D000001 2.6e-16 91.3 87 44.8
TWI74G0121 Tripterygium wilfordii HOM05D003210 ORTHO05D000001 2.6e-16 91.3 83 50.6
VMungo1383G3073 Vigna mungo HOM05D003210 ORTHO05D000001 2.6e-16 91.3 76 60.5
Glyma.09G200200 Glycine max HOM05D003210 ORTHO05D000001 3.4e-16 90.9 93 45.2
PGSC0003DMG401028232 Solanum tuberosum HOM05D003210 ORTHO05D000001 4.4e-16 90.5 87 43.7
Ciclev10018770m.g Citrus clementina HOM05D003210 ORTHO05D000001 9.9e-16 89.4 76 56.6
Thecc.01G088700 Theobroma cacao HOM05D003210 ORTHO05D000001 9.9e-16 89.4 89 48.3
THA.LOC104808438 Tarenaya hassleriana HOM05D003210 ORTHO05D000001 1.3e-15 89.0 58 70.7
TAR625G1193 Trochodendron aralioides HOM05D003210 ORTHO05D000001 1.3e-15 89.0 78 55.1
Nitab4.5_0002364g0030 Nicotiana tabacum HOM05D003210 ORTHO05D000001 1.7e-15 88.6 81 45.7
EL10Ac6g15188 Beta vulgaris HOM05D003210 ORTHO05D000001 2.2e-15 88.2 135 33.3
CiPaw.08G142200 Carya illinoinensis HOM05D003210 ORTHO05D000001 2.2e-15 88.2 74 54.1
HanXRQChr04g0122161 Helianthus annuus HOM05D003210 ORTHO05D000001 2.9e-15 87.8 72 52.8
Rhsim05G0168300 Rhododendron simsii HOM05D003210 ORTHO05D000001 2.9e-15 87.8 69 53.6
BcaC01g02795 Brassica carinata HOM05D003210 ORTHO05D032134 3.8e-15 87.4 204 33.8
Os02g0582300 Oryza sativa ssp. japonica HOM05D003210 ORTHO05D000001 3.8e-15 87.4 226 26.5
PGR102G2337 Punica granatum HOM05D003210 ORTHO05D000001 3.8e-15 87.4 61 63.9
TAR381G0732 Trochodendron aralioides HOM05D003210 ORTHO05D000001 3.8e-15 87.4 66 62.1
GSVIVG01038280001 Vitis vinifera HOM05D003210 ORTHO05D000001 6.4e-15 86.7 69 55.1
Nitab4.5_0000574g0030 Nicotiana tabacum HOM05D003210 ORTHO05D000001 1.1e-14 85.9 81 45.7
Duzib264G1117 Durio zibethinus HOM05D003210 ORTHO05D000001 1.4e-14 85.5 73 54.8
Atru.chr4.1465 Acer truncatum HOM05D003210 ORTHO05D000001 1.9e-14 85.1 57 66.7
CANSAT01G1059 Cannabis sativa HOM05D003210 ORTHO05D000001 1.9e-14 85.1 73 52.1
PGSC0003DMG400023572 Solanum tuberosum HOM05D003210 ORTHO05D000001 7.1e-14 83.2 78 43.6
CSS0000965 Camellia sinensis var. sinensis HOM05D003210 ORTHO05D000001 9.3e-14 82.8 77 48.1
HanXRQChr06g0169331 Helianthus annuus HOM05D003210 ORTHO05D000001 9.3e-14 82.8 74 51.4
Oeu017113.2 Olea europaea HOM05D000258 ORTHO05D000001 9.3e-14 82.8 72 51.4
COL.COLO4_27373 Corchorus olitorius HOM05D003210 ORTHO05D000001 1.6e-13 82.0 124 35.5
vmacro18279 Vaccinium macrocarpon HOM05D003210 ORTHO05D008377 2.1e-13 81.6 107 41.1
AL3G14030 Arabidopsis lyrata HOM05D003210 ORTHO05D000001 7.8e-13 79.7 86 47.7
Lsat_1_v5_gn_7_6901 Lactuca sativa HOM05D003210 ORTHO05D000001 1.0e-12 79.3 78 50.0
Cc03_g12590 Coffea canephora HOM05D003210 ORTHO05D000001 2.3e-12 78.2 72 45.8
PSO541G2059 Papaver somniferum HOM05D003210 ORTHO05D000001 3.9e-12 77.4 69 46.4
FAN23G1801 Fragaria x ananassa HOM05D003210 ORTHO05D000001 5.1e-12 77.0 143 34.3
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 1.1e-11 75.9 84 41.7
Gohir.D12G079600 Gossypium hirsutum HOM05D003210 ORTHO05D000001 2.5e-11 74.7 70 50.0
Dinv24770 Davidia involucrata HOM05D003210 ORTHO05D000001 4.3e-11 73.9 219 26.5
Hund03005 Selenicereus undatus HOM05D003210 ORTHO05D000001 4.3e-11 73.9 67 49.3
THA.LOC104798889 Tarenaya hassleriana HOM05D003210 ORTHO05D000001 1.3e-10 72.4 130 40.8
MBI16_g31256_MAGBIO Magnolia biondii HOM05D003210 ORTHO05D000001 2.1e-10 71.6 67 46.3
MD03G1170600 Malus domestica HOM05D003210 ORTHO05D000001 4.8e-10 70.5 71 46.5
Sc06g0009870 Simmondsia chinensis HOM05D003210 ORTHO05D000001 4.8e-10 70.5 155 27.1
Thhalv10005373m.g Eutrema salsugineum HOM05D003210 ORTHO05D000001 1.4e-09 68.9 51 58.8
CiPaw.01G035200 Carya illinoinensis HOM05D000891 ORTHO05D000761 1.8e-09 68.6 212 23.6
FvH4_6g41080 Fragaria vesca HOM05D003210 ORTHO05D000001 1.8e-09 68.6 150 25.3
FAN14G2019 Fragaria x ananassa HOM05D003210 ORTHO05D000001 1.8e-09 68.6 150 25.3
Aa31LG1G16470 Aethionema arabicum HOM05D003210 ORTHO05D000001 2.4e-09 68.2 50 62.0
Lj2g0010731 Lotus japonicus HOM05D003210 ORTHO05D000001 2.4e-09 68.2 75 45.3
Medtr5g031740 Medicago truncatula HOM05D003210 ORTHO05D000001 1.2e-08 65.9 69 44.9
Zm00001eb183350 Zea mays HOM05D003210 ORTHO05D000001 1.5e-08 65.5 109 30.3
Sopen02g030210 Solanum pennellii HOM05D004651 ORTHO05D005761 2.0e-08 65.1 191 25.7
Solyc02g085650.4 Solanum lycopersicum HOM05D001985 ORTHO05D000761 3.4e-08 64.3 213 23.9
Oeu017112.4 Olea europaea HOM05D000167 ORTHO05D000465 5.8e-08 63.5 196 27.6
Eucgr.H02438 Eucalyptus grandis HOM05D003210 ORTHO05D000001 1.3e-07 62.4 49 53.1
Glyma.01G021450 Glycine max HOM05D003210 ORTHO05D000001 1.3e-07 62.4 214 24.8
Prupe.3G201200 Prunus persica HOM05D003210 ORTHO05D000001 1.3e-07 62.4 225 24.4
MSTRG.23543 Avicennia marina HOM05D000891 ORTHO05D000761 2.9e-07 61.2 214 23.8
CDE02G4398 Ceratophyllum demersum HOM05D003210 ORTHO05D000001 2.9e-07 61.2 54 40.7
Zm00001eb037970 Zea mays HOM05D003210 ORTHO05D000001 3.8e-07 60.8 192 25.5
Os06g0690900 Oryza sativa ssp. japonica HOM05D003210 ORTHO05D000001 4.9e-07 60.5 60 43.3
Sed0005043 Sechium edule HOM05D008619 ORTHO05D000090 4.9e-07 60.5 98 32.7
TPR.G36733 Trifolium pratense HOM05D003210 ORTHO05D000001 4.9e-07 60.5 56 50.0
Ah.03g139830 Amaranthus hybridus HOM05D003210 ORTHO05D000001 8.4e-07 59.7 55 49.1
AagrBONN_evm.TU.Sc2ySwM_362.237 Anthoceros agrestis HOM05D000001 ORTHO05D000003 8.4e-07 59.7 143 25.2
arahy.Tifrunner.gnm1.ann1.PFI7NN Arachis hypogaea HOM05D003210 ORTHO05D000001 8.4e-07 59.7 70 42.9
arahy.Tifrunner.gnm1.ann1.SQ2KUV Arachis hypogaea HOM05D003210 ORTHO05D000001 8.4e-07 59.7 70 42.9
Cc07_g09260 Coffea canephora HOM05D000891 ORTHO05D000761 8.4e-07 59.7 205 22.9
THA.LOC104819041 Tarenaya hassleriana HOM05D003210 ORTHO05D000001 8.4e-07 59.7 172 25.0
C03p60430 Brassica napus HOM05D003210 ORTHO05D041107 1.4e-06 58.9 49 61.2
BolC3t18304H Brassica oleracea HOM05D003210 ORTHO05D041107 1.4e-06 58.9 49 61.2
Ca_25227_v3 Cicer arietinum L. HOM05D003210 ORTHO05D000001 1.9e-06 58.5 247 20.6
AagrBONN_evm.TU.Sc2ySwM_344.3866 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.4e-06 58.2 173 23.7
CAN.G358.118 Capsicum annuum HOM05D000891 ORTHO05D000761 3.2e-06 57.8 102 30.4
Lalb_Chr09g0325941 Lupinus albus HOM05D003210 ORTHO05D000001 3.2e-06 57.8 69 44.9
Thecc.01G191200 Theobroma cacao HOM05D003210 ORTHO05D000001 3.2e-06 57.8 136 25.7
Lalb_Chr03g0042211 Lupinus albus HOM05D003210 ORTHO05D000001 4.2e-06 57.4 39 64.1
Atru.chr3.547 Acer truncatum HOM05D000891 ORTHO05D000761 7.1e-06 56.6 207 22.7
MSTRG.5190 Avicennia marina HOM05D002825 ORTHO05D003824 7.1e-06 56.6 106 28.3
Thhalv10011454m.g Eutrema salsugineum HOM05D002453 ORTHO05D008746 9.3e-06 56.2 162 27.2
SalBow1G4634 Salvia bowleyana HOM05D042251 ORTHO05D002854 9.3e-06 56.2 102 28.4
Zm00001eb118600 Zea mays HOM05D003210 ORTHO05D000001 9.3e-06 56.2 63 38.1
Zm00001eb164240 Zea mays HOM05D003210 ORTHO05D000001 9.3e-06 56.2 63 38.1


User provided reference genes

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