Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G37450 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 0.0e+00 1147.5 824 100.0
AT1G77270 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 7.0e-204 714.9 814 63.3
Carub.0002s2415 Capsella rubella HOM05D009282 ORTHO05D003486 6.0e-179 632.1 529 75.4
CARHR070750 Cardamine hirsuta HOM05D009282 ORTHO05D003486 5.9e-118 429.5 523 52.0
Thhalv10018476m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 1.1e-113 415.2 524 50.8
Sp5g32440 Schrenkiella parvula HOM05D009282 ORTHO05D003486 4.2e-100 370.2 679 45.8
BolC2t09471H Brassica oleracea HOM05D009282 ORTHO05D003486 3.9e-77 293.9 521 42.8
C02p34410 Brassica napus HOM05D009282 ORTHO05D003486 2.5e-76 291.2 572 42.3
BcaC03g15725 Brassica carinata HOM05D009282 ORTHO05D003486 2.1e-75 288.1 572 42.1
A02p21190 Brassica napus HOM05D009282 ORTHO05D003486 2.1e-75 288.1 566 39.2
BraA02t07136Z Brassica rapa HOM05D009282 ORTHO05D003486 2.3e-74 284.6 558 39.8
BcaB05g25029 Brassica carinata HOM05D009282 ORTHO05D003486 2.6e-73 281.2 572 38.5
Aa31LG4G7280 Aethionema arabicum HOM05D009282 ORTHO05D003486 8.1e-59 233.0 611 33.7
Aa31LG7G5540 Aethionema arabicum HOM05D012602 ORTHO05D003486 3.3e-36 157.9 305 37.0
BcaC05g29566 Brassica carinata HOM05D009282 ORTHO05D003486 5.3e-34 150.6 198 45.5
Thhalv10007934m.g Eutrema salsugineum HOM05D012602 ORTHO05D003486 6.9e-34 150.2 271 36.9
CARHR021930 Cardamine hirsuta HOM05D012602 ORTHO05D003486 1.5e-33 149.1 246 38.6
SpUn0522_0010 Schrenkiella parvula HOM05D009282 ORTHO05D003486 4.5e-33 147.5 222 41.4
Thhalv10020550m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 1.7e-32 145.6 275 36.0
CARHR082440 Cardamine hirsuta HOM05D009282 ORTHO05D003486 6.5e-32 143.7 301 34.6
Sp3g06660 Schrenkiella parvula HOM05D009282 ORTHO05D003486 3.2e-31 141.4 289 35.3
C05p59590 Brassica napus HOM05D009282 ORTHO05D003486 2.1e-30 138.7 209 42.1
BolC5t34614H Brassica oleracea HOM05D009282 ORTHO05D003486 7.9e-30 136.7 211 41.7
Carub.0001s2100 Capsella rubella HOM05D012602 ORTHO05D003486 7.9e-30 136.7 288 35.8
A05p40490 Brassica napus HOM05D009282 ORTHO05D003486 1.0e-29 136.3 204 41.7
BraA05t22782Z Brassica rapa HOM05D009282 ORTHO05D003486 1.0e-29 136.3 208 40.9
AL1G34710 Arabidopsis lyrata HOM05D012602 ORTHO05D003486 1.8e-29 135.6 284 35.6
BraA01t04367Z Brassica rapa HOM05D009282 ORTHO05D003486 1.8e-29 135.6 202 39.6
BolC1t05537H Brassica oleracea HOM05D009282 ORTHO05D003486 3.0e-29 134.8 291 36.1
BcaB04g21273 Brassica carinata HOM05D009282 ORTHO05D003486 7.4e-28 130.2 199 40.2
Carub.0003s0731 Capsella rubella HOM05D009282 ORTHO05D003486 1.3e-27 129.4 302 32.8
AL3G19090 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 1.6e-27 129.0 255 33.3
AT3G07730 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 3.7e-27 127.9 217 37.8
THA.LOC104812078 Tarenaya hassleriana HOM05D006236 ORTHO05D003486 5.3e-26 124.0 267 31.1
AT4G01170 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 1.5e-25 122.5 294 31.3
AT1G21560 Arabidopsis thaliana HOM05D012602 ORTHO05D003486 7.6e-25 120.2 280 32.9
THA.LOC104813683 Tarenaya hassleriana HOM05D009282 ORTHO05D003486 1.3e-24 119.4 306 30.7
BcaC05g26073 Brassica carinata HOM05D012602 ORTHO05D003486 1.1e-23 116.3 281 33.1
BolC5t30754H Brassica oleracea HOM05D012602 ORTHO05D003486 3.2e-23 114.8 281 32.7
C05p20560 Brassica napus HOM05D012602 ORTHO05D003486 4.2e-23 114.4 281 32.7
A06p17650 Brassica napus HOM05D012602 ORTHO05D003486 1.8e-21 109.0 284 31.0
CiPaw.03G184300 Carya illinoinensis HOM05D006236 ORTHO05D003486 1.8e-21 109.0 192 34.4
BraA06t24857Z Brassica rapa HOM05D012602 ORTHO05D003486 5.1e-21 107.5 284 31.0
Sp1g19100 Schrenkiella parvula HOM05D012602 ORTHO05D003486 2.5e-20 105.1 225 32.9
Thecc.08G133800 Theobroma cacao HOM05D006236 ORTHO05D003486 2.2e-19 102.1 200 34.5
PGR044G2319 Punica granatum HOM05D006236 ORTHO05D003486 8.2e-19 100.1 194 36.6
Manes.02G169100 Manihot esculenta HOM05D006236 ORTHO05D003486 4.1e-18 97.8 200 30.5
Ciclev10000428m.g Citrus clementina HOM05D006236 ORTHO05D003486 1.5e-17 95.9 213 31.0
QL12p002389 Quercus lobata HOM05D006236 ORTHO05D003486 3.4e-17 94.7 108 45.4
Prupe.1G488800 Prunus persica HOM05D006236 ORTHO05D003486 7.7e-17 93.6 117 41.0
DCAR_028204 Daucus carota HOM05D006236 ORTHO05D003486 1.7e-16 92.4 108 44.4
MD15G1133200 Malus domestica HOM05D006236 ORTHO05D003486 3.2e-15 88.2 134 39.6
Oeu047174.1 Olea europaea HOM05D006236 ORTHO05D003486 3.2e-15 88.2 108 41.7
TAR625G0695 Trochodendron aralioides HOM05D006236 ORTHO05D003486 4.2e-15 87.8 110 43.6
QL09p032233 Quercus lobata HOM05D006236 ORTHO05D003486 5.5e-15 87.4 309 27.8
SGA_v2.0_scaffold28G11968 Striga asiatica HOM05D006236 ORTHO05D003486 5.5e-15 87.4 102 42.2
TWI60G0548 Tripterygium wilfordii HOM05D006236 ORTHO05D003486 9.4e-15 86.7 222 32.4
GSVIVG01008800001 Vitis vinifera HOM05D006236 ORTHO05D003486 1.6e-14 85.9 235 29.4
Nn5g28446 Nelumbo nucifera HOM05D006236 ORTHO05D003486 6.1e-14 84.0 197 30.5
Eucgr.E01002 Eucalyptus grandis HOM05D006236 ORTHO05D003486 7.9e-14 83.6 100 47.0
Duzib093G1452 Durio zibethinus HOM05D006236 ORTHO05D003486 1.0e-13 83.2 152 33.6
Gohir.D02G077800 Gossypium hirsutum HOM05D006236 ORTHO05D003486 1.0e-13 83.2 287 26.5
MSTRG.24177 Avicennia marina HOM05D006236 ORTHO05D003486 1.4e-13 82.8 178 31.5
CiPaw.11G076600 Carya illinoinensis HOM05D006236 ORTHO05D003486 1.4e-13 82.8 118 40.7
Psat0s1315g0200 Pisum sativum HOM05D006236 ORTHO05D003486 2.3e-13 82.0 203 29.1
PGSC0003DMG400004651 Solanum tuberosum HOM05D012804 ORTHO05D003486 2.3e-13 82.0 149 32.2
CAN.G484.6 Capsicum annuum HOM05D012804 ORTHO05D003486 3.0e-13 81.6 155 31.6
Sed0000792 Sechium edule HOM05D006236 ORTHO05D003486 3.0e-13 81.6 151 33.8
VMungo1309G0219 Vigna mungo HOM05D006236 ORTHO05D003486 3.0e-13 81.6 114 38.6
Migut.N03258 Erythranthe guttata HOM05D006236 ORTHO05D003486 3.9e-13 81.3 189 30.7
Peaxi162Scf00234g00718 Petunia axillaris HOM05D012804 ORTHO05D003486 5.1e-13 80.9 185 28.1
Potri.002G077500 Populus trichocarpa HOM05D006236 ORTHO05D003486 5.1e-13 80.9 257 28.4
Dinv14700 Davidia involucrata HOM05D006236 ORTHO05D003486 6.7e-13 80.5 114 41.2
Manes.18G083050 Manihot esculenta HOM05D006236 ORTHO05D003486 6.7e-13 80.5 194 32.0
Oeu042695.1 Olea europaea HOM05D006236 ORTHO05D003486 6.7e-13 80.5 240 28.3
CsaV3_7G022170 Cucumis sativus L. HOM05D006236 ORTHO05D003486 8.8e-13 80.1 220 28.2
Sopen12g034540 Solanum pennellii HOM05D012804 ORTHO05D003486 8.8e-13 80.1 150 30.7
Atru.chr13.1589 Acer truncatum HOM05D006236 ORTHO05D003486 1.1e-12 79.7 211 32.2
Cfa012635 Carpinus fangiana HOM05D006236 ORTHO05D003486 1.5e-12 79.3 102 43.1
Nitab4.5_0000205g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 2.0e-12 79.0 120 32.5
MD08G1159900 Malus domestica HOM05D006236 ORTHO05D003486 2.5e-12 78.6 117 38.5
Phvul.009G156700 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 2.5e-12 78.6 99 42.4
Haze_03510 Corylus avellana HOM05D006236 ORTHO05D003486 4.3e-12 77.8 120 41.7
Peaxi162Scf00062g00089 Petunia axillaris HOM05D012804 ORTHO05D003486 4.3e-12 77.8 135 30.4
FAN15G3020 Fragaria x ananassa HOM05D006236 ORTHO05D003486 5.7e-12 77.4 269 27.1
RcHm_v2.0_Chr6g0296811 Rosa chinensis HOM05D006236 ORTHO05D003486 5.7e-12 77.4 221 29.9
Lalb_Chr08g0237871 Lupinus albus HOM05D006236 ORTHO05D003486 9.7e-12 76.6 99 38.4
Medtr1g026800 Medicago truncatula HOM05D006236 ORTHO05D003486 9.7e-12 76.6 156 32.1
Nitab4.5_0011766g0010 Nicotiana tabacum HOM05D012804 ORTHO05D003486 9.7e-12 76.6 167 28.7
Sabra02G0060900 Salix brachista HOM05D006236 ORTHO05D003486 9.7e-12 76.6 237 28.7
Solyc12g099920.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 9.7e-12 76.6 273 25.6
CAN.G1187.8 Capsicum annuum HOM05D012804 ORTHO05D003486 1.3e-11 76.3 131 33.6
Glyma.06G159000 Glycine max HOM05D006236 ORTHO05D003486 1.7e-11 75.9 99 40.4
Actinidia15208 Actinidia chinensis HOM05D006236 ORTHO05D003486 2.2e-11 75.5 104 41.3
Medtr1g026790 Medicago truncatula HOM05D006236 ORTHO05D003486 2.2e-11 75.5 199 30.7
Nitab4.5_0001925g0210 Nicotiana tabacum HOM05D012804 ORTHO05D003486 2.2e-11 75.5 160 30.6
RcHm_v2.0_Chr6g0296801 Rosa chinensis HOM05D006236 ORTHO05D003486 2.2e-11 75.5 229 29.3
Glyma.04G206551 Glycine max HOM05D006236 ORTHO05D003486 3.7e-11 74.7 230 26.5
ClCG09G021830 Citrullus lanatus HOM05D006236 ORTHO05D003486 4.8e-11 74.3 275 25.1
Os04g0221000 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 1.1e-10 73.2 106 36.8
Medtr2g010820 Medicago truncatula HOM05D006236 ORTHO05D003486 1.4e-10 72.8 177 31.6
Dinv27264 Davidia involucrata HOM05D006236 ORTHO05D003486 1.8e-10 72.4 180 30.0
TPR.G32494 Trifolium pratense HOM05D006236 ORTHO05D003486 1.8e-10 72.4 158 32.3
FvH4_2g27990 Fragaria vesca HOM05D006236 ORTHO05D003486 2.4e-10 72.0 104 40.4
Glyma.14G156000 Glycine max HOM05D006236 ORTHO05D003486 2.4e-10 72.0 195 28.2
Pp3c8_15980 Physcomitrium patens HOM05D006236 ORTHO05D003486 2.4e-10 72.0 117 40.2
Glyma.13G034700 Glycine max HOM05D006236 ORTHO05D003486 4.1e-10 71.2 194 29.9
ATR0824G107 Amborella trichopoda HOM05D049392 ORTHO05D003486 5.3e-10 70.9 99 40.4
Cfa010576 Carpinus fangiana HOM05D006236 ORTHO05D003486 5.3e-10 70.9 108 42.6
CDE02G3425 Ceratophyllum demersum HOM05D006236 ORTHO05D003486 6.9e-10 70.5 100 41.0
Os04g0539100 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 6.9e-10 70.5 103 33.0
Pp3c14_13780 Physcomitrium patens HOM05D002377 ORTHO05D003486 6.9e-10 70.5 108 38.9
TPR.G24541 Trifolium pratense HOM05D006236 ORTHO05D003486 6.9e-10 70.5 184 27.7
Zm00001eb075330 Zea mays HOM05D006236 ORTHO05D003486 9.1e-10 70.1 141 32.6
MELO3C012710.2 Cucumis melo HOM05D006236 ORTHO05D003486 1.2e-09 69.7 193 28.5
Phvul.001G067500 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 2.0e-09 68.9 160 31.2
Sed0021928 Sechium edule HOM05D006236 ORTHO05D003486 2.0e-09 68.9 278 24.5
FvH4_2g27980 Fragaria vesca HOM05D006236 ORTHO05D003486 2.6e-09 68.6 154 33.1
HanXRQChr05g0149711 Helianthus annuus HOM05D006236 ORTHO05D003486 3.4e-09 68.2 155 34.2
Prupe.3G258400 Prunus persica HOM05D006236 ORTHO05D003486 4.5e-09 67.8 105 36.2
SMO147G0016 Selaginella moellendorffii HOM05D006236 ORTHO05D003486 4.5e-09 67.8 136 30.9
TPR.G28699 Trifolium pratense HOM05D006236 ORTHO05D003486 4.5e-09 67.8 99 38.4
SalBow2G2217 Salvia bowleyana HOM05D006236 ORTHO05D003486 5.9e-09 67.4 129 31.8
CANSAT78G2054 Cannabis sativa HOM05D006236 ORTHO05D003486 7.7e-09 67.0 124 36.3
Oeu016130.1 Olea europaea HOM05D006236 ORTHO05D003486 7.7e-09 67.0 281 24.6
FAN20G3074 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.0e-08 66.6 154 32.5
PSO170G0742 Papaver somniferum HOM05D020877 ORTHO05D003486 1.0e-08 66.6 150 32.0
HPP92_008975 Vanilla planifolia HOM05D006236 ORTHO05D003486 1.0e-08 66.6 100 34.0
COL.COLO4_33391 Corchorus olitorius HOM05D006236 ORTHO05D003486 1.7e-08 65.9 141 31.2
Psat5g058120 Pisum sativum HOM05D006236 ORTHO05D003486 2.2e-08 65.5 99 40.4
Ciclev10003901m.g Citrus clementina HOM05D006236 ORTHO05D003486 2.9e-08 65.1 133 33.8
Gohir.A02G070600 Gossypium hirsutum HOM05D006236 ORTHO05D003486 2.9e-08 65.1 287 24.4
Os05g0423200 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 2.9e-08 65.1 152 30.9
PSO528G0080 Papaver somniferum HOM05D020877 ORTHO05D003486 2.9e-08 65.1 108 37.0
arahy.Tifrunner.gnm1.ann1.JAMD1N Arachis hypogaea HOM05D024686 ORTHO05D003486 3.8e-08 64.7 160 28.8
CANSAT78G0622 Cannabis sativa HOM05D006236 ORTHO05D003486 3.8e-08 64.7 101 37.6
CANSAT78G1984 Cannabis sativa HOM05D006236 ORTHO05D003486 5.0e-08 64.3 112 36.6
Gorai.005G087300 Gossypium raimondii HOM05D006236 ORTHO05D003486 5.0e-08 64.3 146 30.8
FAN15G0899 Fragaria x ananassa HOM05D006236 ORTHO05D003486 6.5e-08 63.9 104 36.5
Medtr1g026810 Medicago truncatula HOM05D006236 ORTHO05D003486 6.5e-08 63.9 174 29.3
PSO528G0175 Papaver somniferum HOM05D020877 ORTHO05D003486 6.5e-08 63.9 101 36.6
Gorai.005G087400 Gossypium raimondii HOM05D006236 ORTHO05D003486 1.1e-07 63.2 271 24.7
Lj1g0007441 Lotus japonicus HOM05D006236 ORTHO05D003486 1.1e-07 63.2 206 30.1
PSO170G3037 Papaver somniferum HOM05D020877 ORTHO05D003486 1.1e-07 63.2 114 36.0
FAN24G2475 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.4e-07 62.8 106 35.8
arahy.Tifrunner.gnm1.ann1.Y133Z2 Arachis hypogaea HOM05D024686 ORTHO05D003486 1.9e-07 62.4 101 34.7
FAN02G2378 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.9e-07 62.4 154 31.8
TPR.G28151 Trifolium pratense HOM05D006236 ORTHO05D003486 1.9e-07 62.4 110 35.5
arahy.Tifrunner.gnm1.ann1.E8STVK Arachis hypogaea HOM05D024686 ORTHO05D003486 3.2e-07 61.6 160 27.5
Cc00_g10350 Coffea canephora HOM05D006236 ORTHO05D003486 3.2e-07 61.6 91 39.6
Lsat_1_v5_gn_6_110341 Lactuca sativa HOM05D006236 ORTHO05D003486 5.5e-07 60.8 101 38.6
Lalb_Chr04g0253561 Lupinus albus HOM05D006236 ORTHO05D003486 5.5e-07 60.8 171 29.2
AagrBONN_evm.TU.Sc2ySwM_228.1542 Anthoceros agrestis HOM05D002377 ORTHO05D003486 7.2e-07 60.5 99 39.4
Ca_17011_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 7.2e-07 60.5 126 31.0
arahy.Tifrunner.gnm1.ann1.0TWQ75 Arachis hypogaea HOM05D024686 ORTHO05D003486 9.4e-07 60.1 101 32.7
Gohir.D02G077700 Gossypium hirsutum HOM05D006236 ORTHO05D003486 1.2e-06 59.7 136 30.1
Hund17351 Selenicereus undatus HOM05D031599 ORTHO05D003486 1.6e-06 59.3 94 34.0
SEGI_20168 Sequoiadendron giganteum HOM05D029892 ORTHO05D003486 2.1e-06 58.9 125 31.2
Solyc11g072250.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 2.1e-06 58.9 129 29.5
Sopen11g029920 Solanum pennellii HOM05D012804 ORTHO05D003486 2.1e-06 58.9 129 29.5
FAN27G0089 Fragaria x ananassa HOM05D006236 ORTHO05D003486 2.7e-06 58.5 153 31.4
Medtr3g097180 Medicago truncatula HOM05D006236 ORTHO05D003486 2.7e-06 58.5 92 38.0
Migut.C01072 Erythranthe guttata HOM05D006236 ORTHO05D003486 3.6e-06 58.2 113 31.0
MSTRG.25355 Avicennia marina HOM05D006236 ORTHO05D003486 4.7e-06 57.8 253 25.3
Mapoly0015s0190 Marchantia polymorpha HOM05D006236 ORTHO05D003486 4.7e-06 57.8 99 34.3


User provided reference genes

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