Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G37400 Arabidopsis lyrata HOM05D006959 ORTHO05D008808 3.5e-115 418.3 215 100.0
AT1G77230 Arabidopsis thaliana HOM05D006959 ORTHO05D008808 2.9e-101 372.1 219 88.6
Thhalv10019109m.g Eutrema salsugineum HOM05D006959 ORTHO05D008808 1.3e-93 346.7 224 83.5
Carub.0002s2410 Capsella rubella HOM05D006959 ORTHO05D008808 1.7e-93 346.3 221 83.3
Sp5g32400 Schrenkiella parvula HOM05D006959 ORTHO05D008808 2.2e-88 329.3 217 80.6
CARHR070700 Cardamine hirsuta HOM05D006959 ORTHO05D008808 4.4e-81 305.1 214 75.7
BcaC08g45484 Brassica carinata HOM05D006959 ORTHO05D008808 5.3e-79 298.1 216 73.6
A08p07140 Brassica napus HOM05D006959 ORTHO05D008808 1.9e-76 289.7 215 72.1
BraA08t32726Z Brassica rapa HOM05D006959 ORTHO05D008808 1.9e-76 289.7 215 72.1
C06p31380 Brassica napus HOM05D006959 ORTHO05D008808 1.6e-75 286.6 215 72.1
BolC6t38274H Brassica oleracea HOM05D006959 ORTHO05D008808 6.1e-75 284.6 215 72.1
Aa31LG4G7230 Aethionema arabicum HOM05D006959 ORTHO05D008808 4.4e-73 278.5 233 67.8
THA.LOC104813687 Tarenaya hassleriana HOM05D006959 ORTHO05D008808 4.4e-73 278.5 212 70.3
BcaB02g07099 Brassica carinata HOM05D006959 ORTHO05D008808 1.6e-70 270.0 218 67.0
Gohir.A05G238900 Gossypium hirsutum HOM05D006959 ORTHO05D008808 1.0e-58 230.7 211 60.2
Cpa.g.sc64.158 Carica papaya HOM05D006959 ORTHO05D008808 1.5e-57 226.9 213 58.2
Ciclev10002542m.g Citrus clementina HOM05D006959 ORTHO05D008808 1.5e-57 226.9 209 60.8
Gohir.D05G240800 Gossypium hirsutum HOM05D006959 ORTHO05D008808 1.5e-57 226.9 211 59.7
PGR042G0886 Punica granatum HOM05D006959 ORTHO05D008808 2.0e-57 226.5 219 58.0
Thecc.08G134700 Theobroma cacao HOM05D006959 ORTHO05D008808 3.4e-57 225.7 216 57.4
Duzib093G2176 Durio zibethinus HOM05D006959 ORTHO05D008808 4.4e-57 225.3 212 59.0
Manes.18G084200 Manihot esculenta HOM05D006959 ORTHO05D008808 4.4e-57 225.3 211 59.7
TWI32G1355 Tripterygium wilfordii HOM05D006959 ORTHO05D008808 4.4e-57 225.3 213 58.2
Gorai.009G249600 Gossypium raimondii HOM05D006959 ORTHO05D008808 5.7e-57 224.9 211 59.2
CiPaw.16G022000 Carya illinoinensis HOM05D006959 ORTHO05D008808 9.8e-57 224.2 215 58.1
Atru.chr13.1599 Acer truncatum HOM05D006959 ORTHO05D008808 3.7e-56 222.2 210 59.0
Cfa018414 Carpinus fangiana HOM05D006959 ORTHO05D008808 1.4e-55 220.3 215 56.3
Potri.002G076700 Populus trichocarpa HOM05D006959 ORTHO05D008808 9.2e-55 217.6 209 56.9
COL.COLO4_32963 Corchorus olitorius HOM05D006959 ORTHO05D008808 2.0e-54 216.5 212 58.5
VMungo0647G0259 Vigna mungo HOM05D006959 ORTHO05D008808 1.7e-53 213.4 210 54.8
MD15G1131600 Malus domestica HOM05D006959 ORTHO05D008808 3.9e-53 212.2 210 56.7
Nn1g08935 Nelumbo nucifera HOM05D006959 ORTHO05D008808 5.0e-53 211.8 216 55.1
Sed0020251 Sechium edule HOM05D006959 ORTHO05D008808 5.0e-53 211.8 216 56.5
TAR381G0659 Trochodendron aralioides HOM05D006959 ORTHO05D008808 6.6e-53 211.5 211 54.0
Glyma.13G035500 Glycine max HOM05D006959 ORTHO05D008808 8.6e-53 211.1 210 56.2
Lj4A666T17 Lonicera japonica HOM05D006959 ORTHO05D008808 1.1e-52 210.7 222 56.3
QL09p031824 Quercus lobata HOM05D006959 ORTHO05D008808 1.1e-52 210.7 212 56.1
RcHm_v2.0_Chr6g0297021 Rosa chinensis HOM05D006959 ORTHO05D008808 1.5e-52 210.3 214 54.7
FvH4_2g28060 Fragaria vesca HOM05D006959 ORTHO05D008808 1.9e-52 209.9 216 53.2
FAN27G3284 Fragaria x ananassa HOM05D006959 ORTHO05D008808 1.9e-52 209.9 215 53.5
Phvul.001G066600 Phaseolus vulgaris HOM05D006959 ORTHO05D008808 2.5e-52 209.5 211 55.0
Hund17359 Selenicereus undatus HOM05D006959 ORTHO05D008808 3.3e-52 209.1 208 56.7
FAN24G0315 Fragaria x ananassa HOM05D006959 ORTHO05D008808 4.3e-52 208.8 216 53.2
QL09p031413 Quercus lobata HOM05D006959 ORTHO05D008808 4.3e-52 208.8 212 55.7
Eucgr.F03861 Eucalyptus grandis HOM05D006959 ORTHO05D008808 7.3e-52 208.0 224 54.0
Cc10_g14010 Coffea canephora HOM05D006959 ORTHO05D008808 1.2e-51 207.2 209 56.0
Hma1.2p1_0159F.1_g070330 Hydrangea macrophylla HOM05D006959 ORTHO05D008808 1.2e-51 207.2 210 53.8
Lj4A663T33 Lonicera japonica HOM05D006959 ORTHO05D008808 2.1e-51 206.5 217 56.7
CsaV3_6G033990 Cucumis sativus L. HOM05D006959 ORTHO05D008808 3.6e-51 205.7 211 56.4
Haze_17647 Corylus avellana HOM05D006959 ORTHO05D008808 1.4e-50 203.8 233 51.1
arahy.Tifrunner.gnm1.ann1.P1MCWD Arachis hypogaea HOM05D006959 ORTHO05D008808 1.2e-49 200.7 210 56.2
Lsat_1_v5_gn_1_10340 Lactuca sativa HOM05D006959 ORTHO05D008808 1.2e-49 200.7 216 53.2
GSVIVG01008793001 Vitis vinifera HOM05D006959 ORTHO05D008808 2.0e-49 199.9 157 67.5
MELO3C008461.2 Cucumis melo HOM05D006959 ORTHO05D008808 4.4e-49 198.7 229 54.1
Migut.C01073 Erythranthe guttata HOM05D006959 ORTHO05D008808 5.8e-49 198.4 219 52.1
Oeu026374.1 Olea europaea HOM05D006959 ORTHO05D008808 9.8e-49 197.6 223 49.8
Os02g0553500 Oryza sativa ssp. japonica HOM05D006959 ORTHO05D008808 1.3e-48 197.2 209 52.6
MSTRG.1406 Avicennia marina HOM05D006959 ORTHO05D008808 3.7e-48 195.7 216 52.3
HanXRQChr02g0045531 Helianthus annuus HOM05D006959 ORTHO05D008808 8.3e-48 194.5 210 52.9
AUR62013448 Chenopodium quinoa HOM05D006959 ORTHO05D008808 1.1e-47 194.1 222 50.0
AUR62007695 Chenopodium quinoa HOM05D006959 ORTHO05D008808 1.4e-47 193.7 221 50.7
ClCG08G006070 Citrullus lanatus HOM05D006959 ORTHO05D008808 3.2e-47 192.6 247 49.8
PGSC0003DMG402018005 Solanum tuberosum HOM05D006959 ORTHO05D008808 3.2e-47 192.6 213 52.1
PGSC0003DMG403018005 Solanum tuberosum HOM05D006959 ORTHO05D008808 3.2e-47 192.6 213 52.1
Sopen04g026100 Solanum pennellii HOM05D006959 ORTHO05D008808 5.4e-47 191.8 213 52.1
Zm00001eb181980 Zea mays HOM05D006959 ORTHO05D008808 1.6e-46 190.3 212 50.5
CDE06G1932 Ceratophyllum demersum HOM05D006959 ORTHO05D008808 6.0e-46 188.3 200 54.5
Aqoxy6G00289 Aquilegia oxysepala HOM05D006959 ORTHO05D008808 1.0e-45 187.6 140 65.0
Peaxi162Scf00066g00072 Petunia axillaris HOM05D006959 ORTHO05D008808 3.9e-45 185.7 210 50.5
Lj1g0023549 Lotus japonicus HOM05D006959 ORTHO05D008808 6.6e-45 184.9 216 50.0
CAN.G46.11 Capsicum annuum HOM05D006959 ORTHO05D008808 8.6e-45 184.5 209 50.7
Actinidia24726 Actinidia chinensis HOM05D006959 ORTHO05D008808 3.3e-44 182.6 182 57.1
MBI03_g13506_MAGBIO Magnolia biondii HOM05D006959 ORTHO05D008808 5.6e-44 181.8 221 50.2
FAN20G3215 Fragaria x ananassa HOM05D006959 ORTHO05D008808 1.6e-43 180.3 216 48.1
PSO170G0856 Papaver somniferum HOM05D006959 ORTHO05D008808 2.8e-43 179.5 141 61.7
Sabra02G0060200 Salix brachista HOM05D006959 ORTHO05D008808 1.1e-42 177.6 281 42.3
Nitab4.5_0002625g0010 Nicotiana tabacum HOM05D006959 ORTHO05D008808 1.4e-42 177.2 213 48.4
CANSAT64G0796 Cannabis sativa HOM05D006959 ORTHO05D008808 4.0e-42 175.6 214 49.1
EL10Ac1g01371 Beta vulgaris HOM05D006959 ORTHO05D008808 6.8e-42 174.9 253 45.1
SalBow7G4180 Salvia bowleyana HOM05D006959 ORTHO05D008808 1.2e-41 174.1 241 47.3
arahy.Tifrunner.gnm1.ann1.84IAJ5 Arachis hypogaea HOM05D006959 ORTHO05D008808 1.5e-41 173.7 126 71.4
CSS0019542 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 2.0e-41 173.3 209 49.3
PSO528G0249 Papaver somniferum HOM05D006959 ORTHO05D008808 2.0e-41 173.3 225 44.0
HPP92_016131 Vanilla planifolia HOM05D006959 ORTHO05D008808 3.4e-41 172.6 219 45.7
Medtr1g029720 Medicago truncatula HOM05D006959 ORTHO05D008808 9.8e-41 171.0 213 48.4
Nitab4.5_0008327g0010 Nicotiana tabacum HOM05D006959 ORTHO05D008808 8.3e-40 167.9 234 44.9
Lalb_Chr04g0253591 Lupinus albus HOM05D006959 ORTHO05D008808 1.4e-39 167.2 210 48.1
ATR0584G163 Amborella trichopoda HOM05D006959 ORTHO05D008808 2.7e-38 162.9 214 47.7
Actinidia15201 Actinidia chinensis HOM05D006959 ORTHO05D008808 3.5e-38 162.5 217 46.5
Hma1.2p1_0159F.1_g070340 Hydrangea macrophylla HOM05D006959 ORTHO05D008808 4.3e-36 155.6 201 46.8
Glyma.14G156700 Glycine max HOM05D006959 ORTHO05D008808 2.8e-35 152.9 204 46.6
Ca_12642_v3 Cicer arietinum L. HOM05D006959 ORTHO05D008808 6.2e-35 151.8 233 43.8
Psat6g040840 Pisum sativum HOM05D006959 ORTHO05D008808 5.4e-31 138.7 154 55.2
Solyc04g058200.3 Solanum lycopersicum HOM05D006959 ORTHO05D008808 7.1e-31 138.3 109 63.3
DCAR_028201 Daucus carota HOM05D006959 ORTHO05D008808 3.6e-27 125.9 209 41.6
Mapoly0050s0106 Marchantia polymorpha HOM05D006959 ORTHO05D008808 7.1e-23 111.7 155 41.9
Dinv27258 Davidia involucrata HOM05D006959 ORTHO05D008808 1.6e-22 110.5 128 50.0
CSS0009415 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 2.7e-22 109.8 141 50.4
SGA_v2.0_scaffold52G18911 Striga asiatica HOM05D006959 ORTHO05D008808 2.7e-22 109.8 134 51.5
CSS0036249 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 2.3e-21 106.7 143 46.2
TPR.G879 Trifolium pratense HOM05D006959 ORTHO05D008808 5.6e-20 102.1 80 62.5
Prupe.1G487500 Prunus persica HOM05D006959 ORTHO05D008808 3.1e-18 96.3 216 33.3
Cre12.g510034 Chlamydomonas reinhardtii HOM05D006959 ORTHO05D008808 9.9e-17 91.3 113 47.8
Sc26g0002850 Simmondsia chinensis HOM05D006959 ORTHO05D008808 2.4e-15 86.7 70 62.9
RcHm_v2.0_Chr6g0296961 Rosa chinensis HOM05D006959 ORTHO05D008808 7.1e-15 85.1 70 58.6
RcHm_v2.0_Chr6g0296981 Rosa chinensis HOM05D006959 ORTHO05D008808 2.7e-14 83.2 55 72.7
SEGI_04582 Sequoiadendron giganteum HOM05D006959 ORTHO05D008808 9.6e-12 74.7 84 44.0
SEGI_05118 Sequoiadendron giganteum HOM05D006959 ORTHO05D008808 2.8e-11 73.2 84 44.0
FAN24G1784 Fragaria x ananassa HOM05D006959 ORTHO05D008808 8.1e-11 71.6 47 68.1
Carub.0006s2688 Capsella rubella HOM05D005920 ORTHO05D007211 2.0e-09 67.0 137 27.7
BcaB05g23941 Brassica carinata HOM05D005920 ORTHO05D007211 4.5e-09 65.9 137 29.2
Sp6g09620 Schrenkiella parvula HOM05D005920 ORTHO05D007211 1.3e-08 64.3 133 28.6
AT4G08320 Arabidopsis thaliana HOM05D005920 ORTHO05D007211 2.2e-08 63.5 137 27.7
BcaC03g16447 Brassica carinata HOM05D005920 ORTHO05D007211 2.2e-08 63.5 144 30.6
C02p42670 Brassica napus HOM05D005920 ORTHO05D007211 2.2e-08 63.5 144 28.5
THA.LOC104817311 Tarenaya hassleriana HOM05D005920 ORTHO05D007211 2.9e-08 63.2 150 27.3
AL6G42090 Arabidopsis lyrata HOM05D005920 ORTHO05D007211 3.8e-08 62.8 138 29.0
BolSC33t60638H Brassica oleracea HOM05D005920 ORTHO05D007211 6.4e-08 62.0 139 27.3
CARHR259410 Cardamine hirsuta HOM05D005920 ORTHO05D007211 1.1e-07 61.2 140 27.9
A02p26870 Brassica napus HOM05D005920 ORTHO05D007211 1.9e-07 60.5 139 26.6
BraA02t07698Z Brassica rapa HOM05D005920 ORTHO05D007211 1.9e-07 60.5 139 26.6
FAN27G2285 Fragaria x ananassa HOM05D006959 ORTHO05D008808 2.4e-07 60.1 98 36.7
Prupe.1G499100 Prunus persica HOM05D005920 ORTHO05D007211 2.4e-07 60.1 139 25.9
Thhalv10028662m.g Eutrema salsugineum HOM05D005920 ORTHO05D007211 4.2e-07 59.3 137 24.8
CiPaw.06G030600 Carya illinoinensis HOM05D005920 ORTHO05D007211 7.1e-07 58.5 138 24.6
Glyma.02G004400 Glycine max HOM05D006451 ORTHO05D007680 7.1e-07 58.5 121 29.8
Sabra05G0133900 Salix brachista HOM05D005920 ORTHO05D007211 7.1e-07 58.5 137 24.8
MD15G1349900 Malus domestica HOM05D005920 ORTHO05D007211 9.3e-07 58.2 139 24.5
Ciclev10001211m.g Citrus clementina HOM05D005920 ORTHO05D007211 2.1e-06 57.0 135 26.7
FvH4_2g26830 Fragaria vesca HOM05D005920 ORTHO05D007211 2.1e-06 57.0 128 28.1
Thecc.08G124700 Theobroma cacao HOM05D005920 ORTHO05D007211 2.1e-06 57.0 129 24.8
VMungo1383G2940 Vigna mungo HOM05D003946 ORTHO05D004485 2.1e-06 57.0 136 27.2
Ca_01517_v3 Cicer arietinum L. HOM05D003946 ORTHO05D004485 2.7e-06 56.6 179 26.3
FAN24G0658 Fragaria x ananassa HOM05D005920 ORTHO05D007211 2.7e-06 56.6 124 27.4
Lalb_Chr07g0193951 Lupinus albus HOM05D003946 ORTHO05D004485 3.5e-06 56.2 175 26.9
Phvul.008G125199 Phaseolus vulgaris HOM05D003946 ORTHO05D004485 3.5e-06 56.2 133 27.1
CBR_g6631 Chara braunii HOM05D002462 ORTHO05D002893 4.6e-06 55.8 100 28.0
DCAR_006811 Daucus carota HOM05D002462 ORTHO05D002893 4.6e-06 55.8 153 24.8
TPR.G23301 Trifolium pratense HOM05D003946 ORTHO05D004485 4.6e-06 55.8 141 27.0
DCAR_008462 Daucus carota HOM05D002462 ORTHO05D002893 6.0e-06 55.5 138 26.8
DCAR_008463 Daucus carota HOM05D002462 ORTHO05D002893 6.0e-06 55.5 138 26.8
MSTRG.1445 Avicennia marina HOM05D005920 ORTHO05D007211 7.9e-06 55.1 137 25.5
Cfa025863 Carpinus fangiana HOM05D002462 ORTHO05D002893 7.9e-06 55.1 117 25.6
Gohir.A05G234800 Gossypium hirsutum HOM05D005920 ORTHO05D007211 7.9e-06 55.1 127 24.4
Lsat_1_v5_gn_6_112921 Lactuca sativa HOM05D005920 ORTHO05D007211 7.9e-06 55.1 142 26.8
SMO134G0039 Selaginella moellendorffii HOM05D005920 ORTHO05D007211 7.9e-06 55.1 141 29.1


User provided reference genes

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