Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G36620 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 3.4e-124 448.4 227 100.0
AT1G76480 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 6.0e-89 331.3 229 76.9
AL1G33910 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 6.7e-64 248.1 192 69.8
Thhalv10008823m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 3.3e-63 245.7 188 70.2
Sp1g18590 Schrenkiella parvula HOM05D005768 ORTHO05D007100 3.3e-63 245.7 187 71.1
Carub.0001s2036 Capsella rubella HOM05D005768 ORTHO05D007100 2.2e-62 243.0 187 68.4
AT1G20890 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 1.4e-61 240.4 187 69.0
CARHR021320 Cardamine hirsuta HOM05D005768 ORTHO05D007100 4.1e-61 238.8 187 68.4
Aa31LG7G5050 Aethionema arabicum HOM05D005768 ORTHO05D007100 2.6e-60 236.1 192 66.7
BcaC06g34845 Brassica carinata HOM05D005768 ORTHO05D007100 3.4e-60 235.7 187 70.1
A07p15420 Brassica napus HOM05D005768 ORTHO05D007100 1.0e-59 234.2 187 69.0
BcaB07g32084 Brassica carinata HOM05D005768 ORTHO05D007100 8.5e-59 231.1 182 69.8
BcaB03g14295 Brassica carinata HOM05D005768 ORTHO05D007100 3.0e-56 222.6 187 66.8
THA.LOC104812009 Tarenaya hassleriana HOM05D005768 ORTHO05D007100 5.1e-56 221.9 197 62.9
C07p22730 Brassica napus HOM05D005768 ORTHO05D007100 2.8e-46 189.5 142 70.4
BolC7t42805H Brassica oleracea HOM05D005768 ORTHO05D007100 3.5e-44 182.6 142 68.3
Atru.chr4.1221 Acer truncatum HOM05D005768 ORTHO05D007100 4.5e-44 182.2 197 54.8
A06p16890 Brassica napus HOM05D005768 ORTHO05D007100 4.5e-44 182.2 144 67.4
Atru.chr7.2675 Acer truncatum HOM05D005768 ORTHO05D007100 1.7e-43 180.3 180 56.1
BraA06t24798Z Brassica rapa HOM05D005768 ORTHO05D007100 4.2e-42 175.6 181 58.0
Ciclev10022280m.g Citrus clementina HOM05D005768 ORTHO05D007100 2.7e-41 172.9 197 50.8
Thecc.09G049100 Theobroma cacao HOM05D005768 ORTHO05D007100 3.0e-40 169.5 181 55.2
Eucgr.C02988 Eucalyptus grandis HOM05D005768 ORTHO05D007100 5.7e-39 165.2 187 51.3
Gohir.D07G024000 Gossypium hirsutum HOM05D005768 ORTHO05D007100 7.5e-39 164.9 180 52.8
Gorai.001G024700 Gossypium raimondii HOM05D005768 ORTHO05D007100 7.5e-39 164.9 180 52.8
Actinidia18208 Actinidia chinensis HOM05D005768 ORTHO05D007100 9.7e-39 164.5 180 55.0
Cpa.g.sc1868.1 Carica papaya HOM05D005768 ORTHO05D007100 9.7e-39 164.5 193 51.3
Cc00_g09250 Coffea canephora HOM05D005768 ORTHO05D007100 1.7e-38 163.7 188 49.5
Duzib168G0475 Durio zibethinus HOM05D005768 ORTHO05D007100 2.2e-38 163.3 181 51.4
Manes.02G043100 Manihot esculenta HOM05D005768 ORTHO05D007100 3.7e-38 162.5 181 52.5
PGR044G0118 Punica granatum HOM05D005768 ORTHO05D007100 3.7e-38 162.5 198 49.0
Dinv27944 Davidia involucrata HOM05D005768 ORTHO05D007100 1.4e-37 160.6 195 48.2
CiPaw.07G201500 Carya illinoinensis HOM05D005768 ORTHO05D007100 2.6e-36 156.4 194 50.5
FAN27G1715 Fragaria x ananassa HOM05D005768 ORTHO05D007100 2.6e-36 156.4 176 51.7
GSVIVG01035325001 Vitis vinifera HOM05D005768 ORTHO05D007100 2.6e-36 156.4 193 48.7
RcHm_v2.0_Chr6g0306801 Rosa chinensis HOM05D005768 ORTHO05D007100 3.5e-36 156.0 185 50.3
vmacro07473 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 4.5e-36 155.6 180 52.2
COL.COLO4_21009 Corchorus olitorius HOM05D005768 ORTHO05D007100 7.7e-36 154.8 181 51.9
Sed0022019 Sechium edule HOM05D005768 ORTHO05D007100 7.7e-36 154.8 194 47.4
TWI63G1351 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 1.3e-35 154.1 158 55.7
CANSAT56G2391 Cannabis sativa HOM05D005768 ORTHO05D007100 1.7e-35 153.7 199 49.2
Rhsim07G0145000 Rhododendron simsii HOM05D005768 ORTHO05D007100 2.2e-35 153.3 186 51.6
Sopen08g019690 Solanum pennellii HOM05D005768 ORTHO05D007100 2.2e-35 153.3 192 50.0
Prupe.1G443600 Prunus persica HOM05D005768 ORTHO05D007100 8.5e-35 151.4 179 50.8
PGSC0003DMG401025462 Solanum tuberosum HOM05D005768 ORTHO05D007100 1.1e-34 151.0 175 53.1
CSS0002565 Camellia sinensis var. sinensis HOM05D005768 ORTHO05D007100 1.5e-34 150.6 181 51.4
Aqoxy5G03966 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 1.9e-34 150.2 203 44.3
FAN20G2834 Fragaria x ananassa HOM05D005768 ORTHO05D007100 2.5e-34 149.8 188 48.4
Solyc08g066030.3 Solanum lycopersicum HOM05D005768 ORTHO05D007100 2.5e-34 149.8 179 51.4
Psat0s1830g0160 Pisum sativum HOM05D005768 ORTHO05D007100 5.5e-34 148.7 193 50.8
EL10Ac5g12654 Beta vulgaris HOM05D005768 ORTHO05D007100 1.2e-33 147.5 188 47.3
TWI34G0524 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 1.2e-33 147.5 158 54.4
Potri.006G234800 Populus trichocarpa HOM05D005768 ORTHO05D007100 2.1e-33 146.7 183 48.6
MD08G1109000 Malus domestica HOM05D005768 ORTHO05D007100 2.7e-33 146.4 179 49.7
Migut.A00171 Erythranthe guttata HOM05D005768 ORTHO05D007100 4.7e-33 145.6 181 46.4
Ah.02g116310 Amaranthus hybridus HOM05D005768 ORTHO05D007100 8.0e-33 144.8 191 47.6
C05p19520 Brassica napus HOM05D005768 ORTHO05D007100 1.0e-32 144.4 181 51.4
BolC5t30654H Brassica oleracea HOM05D005768 ORTHO05D007100 1.0e-32 144.4 181 51.4
MELO3C003477.2 Cucumis melo HOM05D005768 ORTHO05D007100 1.0e-32 144.4 192 43.2
PSO832G3354 Papaver somniferum HOM05D005768 ORTHO05D007100 1.0e-32 144.4 165 50.9
TPR.G33208 Trifolium pratense HOM05D005768 ORTHO05D007100 1.4e-32 144.1 179 49.7
Nn6g34840 Nelumbo nucifera HOM05D005768 ORTHO05D007100 1.8e-32 143.7 190 47.4
Nitab4.5_0000318g0060 Nicotiana tabacum HOM05D005768 ORTHO05D007100 2.3e-32 143.3 160 52.5
AUR62017359 Chenopodium quinoa HOM05D005768 ORTHO05D007100 3.0e-32 142.9 161 50.3
CsaV3_3G048420 Cucumis sativus L. HOM05D005768 ORTHO05D007100 3.0e-32 142.9 192 43.2
HanXRQChr03g0078001 Helianthus annuus HOM05D005768 ORTHO05D007100 3.0e-32 142.9 196 46.9
ECA234G0765 Erigeron canadensis HOM05D000185 ORTHO05D000105 4.0e-32 142.5 185 45.9
Aqoxy7G01356 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 8.8e-32 141.4 198 45.5
Hma1.2p1_0603F.1_g187720 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 8.8e-32 141.4 158 50.0
AUR62010536 Chenopodium quinoa HOM05D005768 ORTHO05D007100 1.2e-31 141.0 163 49.1
Lsat_1_v5_gn_3_56860 Lactuca sativa HOM05D005768 ORTHO05D007100 1.2e-31 141.0 154 51.9
Psat0s1830g0280 Pisum sativum HOM05D005768 ORTHO05D007100 1.5e-31 140.6 193 47.2
Sabra06G0183200 Salix brachista HOM05D005768 ORTHO05D007100 1.5e-31 140.6 184 49.5
PSO063G0290 Papaver somniferum HOM05D005768 ORTHO05D007100 2.6e-31 139.8 187 47.6
Peaxi162Scf00699g00655 Petunia axillaris HOM05D005768 ORTHO05D007100 3.4e-31 139.4 156 52.6
Glyma.19G233100 Glycine max HOM05D005768 ORTHO05D007100 4.4e-31 139.0 179 50.3
Gohir.A07G022184 Gossypium hirsutum HOM05D005768 ORTHO05D007100 4.4e-31 139.0 138 57.2
Hma1.2p1_0442F.1_g153950 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 7.5e-31 138.3 181 44.8
TAR624G0371 Trochodendron aralioides HOM05D005768 ORTHO05D007100 2.8e-30 136.3 182 48.4
QL12p040865 Quercus lobata HOM05D005768 ORTHO05D007100 3.7e-30 136.0 278 37.1
Sed0000338 Sechium edule HOM05D005768 ORTHO05D007100 3.7e-30 136.0 197 40.1
TAR383G0888 Trochodendron aralioides HOM05D005768 ORTHO05D007100 4.8e-30 135.6 157 53.5
arahy.Tifrunner.gnm1.ann1.FJ9VJT Arachis hypogaea HOM05D005768 ORTHO05D007100 6.3e-30 135.2 222 43.2
Lj1g0020400 Lotus japonicus HOM05D005768 ORTHO05D007100 1.1e-29 134.4 179 47.5
Thhalv10019630m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 1.4e-29 134.0 156 56.4
MSTRG.25924 Avicennia marina HOM05D005768 ORTHO05D007100 1.8e-29 133.7 169 46.2
Lalb_Chr08g0242881 Lupinus albus HOM05D005768 ORTHO05D007100 1.8e-29 133.7 190 45.3
Sc09g0009490 Simmondsia chinensis HOM05D005768 ORTHO05D007100 2.4e-29 133.3 142 51.4
FAN15G1520 Fragaria x ananassa HOM05D005768 ORTHO05D007100 5.4e-29 132.1 169 46.7
vmacro05269 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 7.0e-29 131.7 171 49.7
PSO832G1534 Papaver somniferum HOM05D005768 ORTHO05D007100 9.1e-29 131.3 185 45.9
Phvul.006G089400 Phaseolus vulgaris HOM05D005768 ORTHO05D007100 9.1e-29 131.3 187 49.2
Lalb_Chr24g0397251 Lupinus albus HOM05D005768 ORTHO05D007100 2.0e-28 130.2 179 48.6
Nitab4.5_0002021g0070 Nicotiana tabacum HOM05D005768 ORTHO05D007100 2.0e-28 130.2 154 50.0
unitig_0.g2567 Utricularia gibba HOM05D005768 ORTHO05D007100 3.5e-28 129.4 163 45.4
PSO063G1479 Papaver somniferum HOM05D005768 ORTHO05D007100 4.5e-28 129.0 202 43.1
PSO063G2632 Papaver somniferum HOM05D005768 ORTHO05D007100 4.5e-28 129.0 202 43.1
PSO063G5891 Papaver somniferum HOM05D005768 ORTHO05D007100 4.5e-28 129.0 202 43.1
SalBow6G5216 Salvia bowleyana HOM05D005768 ORTHO05D007100 4.5e-28 129.0 157 47.1
Medtr7g112710 Medicago truncatula HOM05D005768 ORTHO05D007100 2.2e-27 126.7 162 50.6
TPR.G29192 Trifolium pratense HOM05D005768 ORTHO05D007100 5.0e-27 125.6 162 50.0
Haze_01966 Corylus avellana HOM05D005768 ORTHO05D007100 8.5e-27 124.8 155 51.0
SGA_v2.0_scaffold103G30048 Striga asiatica HOM05D005768 ORTHO05D007100 4.2e-26 122.5 149 48.3
ATR0693G003 Amborella trichopoda HOM05D005768 ORTHO05D007100 3.0e-24 116.3 151 46.4
Oeu033885.1 Olea europaea HOM05D005768 ORTHO05D007100 2.2e-22 110.2 136 47.1
Os08g0374900 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 2.2e-22 110.2 189 41.3
Zm00001eb061390 Zea mays HOM05D005768 ORTHO05D007100 3.7e-22 109.4 157 45.2
Os03g0804100 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 4.9e-22 109.0 158 44.3
Lj7A696G17 Lonicera japonica HOM05D005768 ORTHO05D007100 6.3e-22 108.6 143 44.8
SEGI_27706 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 1.8e-21 107.1 188 41.5
Hund19578 Selenicereus undatus HOM05D005768 ORTHO05D007100 4.5e-20 102.4 125 47.2
PSO063G4631 Papaver somniferum HOM05D005768 ORTHO05D007100 7.7e-20 101.7 144 44.4
PSO832G4156 Papaver somniferum HOM05D005768 ORTHO05D007100 3.8e-19 99.4 147 43.5
SalBow4G3076 Salvia bowleyana HOM05D005768 ORTHO05D007100 6.6e-19 98.6 172 34.9
MBI02_g46884_MAGBIO Magnolia biondii HOM05D000614 ORTHO05D007100 1.2e-17 94.4 124 45.2
ClCG02G014210 Citrullus lanatus HOM05D005768 ORTHO05D007100 1.6e-17 94.0 130 42.3
Ca_05797_v3 Cicer arietinum L. HOM05D001134 ORTHO05D001035 6.1e-17 92.0 132 46.2
Glyma.03G235400 Glycine max HOM05D005768 ORTHO05D007100 3.4e-15 86.3 119 49.6
HPP92_009604 Vanilla planifolia HOM05D005768 ORTHO05D007100 8.3e-14 81.6 154 37.7
Pp3c24_1520 Physcomitrium patens HOM05D005768 ORTHO05D007100 1.8e-13 80.5 190 37.4
FvH4_2g35150 Fragaria vesca HOM05D005768 ORTHO05D007100 3.2e-13 79.7 92 48.9
MBI02_g46987_MAGBIO Magnolia biondii HOM05D005768 ORTHO05D007100 3.2e-13 79.7 103 46.6
Sc09g0009510 Simmondsia chinensis HOM05D005768 ORTHO05D007100 3.2e-13 79.7 73 56.2
CDE02G0943 Ceratophyllum demersum HOM05D005768 ORTHO05D007100 5.4e-13 79.0 91 52.7
BcaC05g25998 Brassica carinata HOM05D005768 ORTHO05D007100 7.8e-12 75.1 63 54.0
DCAR_003074 Daucus carota HOM05D001613 ORTHO05D001556 7.3e-10 68.6 75 53.3
Mapoly0062s0068 Marchantia polymorpha HOM05D005768 ORTHO05D007100 6.2e-09 65.5 171 32.2
C02p33000 Brassica napus HOM05D005768 ORTHO05D041760 5.2e-08 62.4 52 59.6
HanXRQChr14g0439211 Helianthus annuus HOM05D005768 ORTHO05D007100 3.4e-07 59.7 77 41.6
BolC2t09396H Brassica oleracea HOM05D005768 ORTHO05D041760 4.4e-07 59.3 45 62.2


User provided reference genes

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