Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G36590 Arabidopsis lyrata HOM05D006984 ORTHO05D008773 4.2e-136 488.0 249 100.0
AT1G76450 Arabidopsis thaliana HOM05D006984 ORTHO05D008773 8.8e-126 453.8 249 92.8
Carub.0002s2337 Capsella rubella HOM05D006984 ORTHO05D008773 1.3e-121 439.9 255 87.8
Sp5g31620 Schrenkiella parvula HOM05D006984 ORTHO05D008773 3.6e-119 431.8 254 87.0
CARHR070010 Cardamine hirsuta HOM05D006984 ORTHO05D008773 2.6e-117 425.6 265 83.8
BcaC08g47152 Brassica carinata HOM05D006984 ORTHO05D008773 5.5e-112 407.9 251 83.3
BcaC08g47243 Brassica carinata HOM05D006984 ORTHO05D008773 2.8e-111 405.6 252 82.5
BolC6t40095H Brassica oleracea HOM05D006984 ORTHO05D008773 3.0e-110 402.1 252 81.7
BraA07t31741Z Brassica rapa HOM05D006984 ORTHO05D008773 1.2e-109 400.2 252 81.3
Aa31LG4G6540 Aethionema arabicum HOM05D006984 ORTHO05D008773 2.0e-109 399.4 254 78.3
A07p42120 Brassica napus HOM05D006984 ORTHO05D008773 2.4e-107 392.5 249 81.9
Thhalv10019042m.g Eutrema salsugineum HOM05D006984 ORTHO05D008773 1.6e-106 389.8 255 81.2
C06p50690 Brassica napus HOM05D006984 ORTHO05D008773 2.0e-106 389.4 243 81.9
THA.LOC104813736 Tarenaya hassleriana HOM05D006984 ORTHO05D008773 1.1e-83 313.9 256 63.7
Cpa.g.sc26.14 Carica papaya HOM05D006984 ORTHO05D008773 3.1e-78 295.8 203 70.0
QL02p015743 Quercus lobata HOM05D006984 ORTHO05D008773 2.0e-77 293.1 218 66.5
Atru.chr13.60 Acer truncatum HOM05D006984 ORTHO05D008773 5.8e-77 291.6 257 61.1
MELO3C026518.2 Cucumis melo HOM05D006984 ORTHO05D008773 2.9e-76 289.3 211 68.7
CsaV3_6G035930 Cucumis sativus L. HOM05D006984 ORTHO05D008773 1.4e-75 287.0 222 65.8
Ciclev10001894m.g Citrus clementina HOM05D006984 ORTHO05D008773 1.0e-73 280.8 191 72.8
Sed0024892 Sechium edule HOM05D006984 ORTHO05D008773 1.3e-73 280.4 186 71.5
GSVIVG01013427001 Vitis vinifera HOM05D006984 ORTHO05D008773 3.9e-73 278.9 211 63.5
Dinv13757 Davidia involucrata HOM05D006984 ORTHO05D008773 6.6e-73 278.1 216 61.1
TWI56G0056 Tripterygium wilfordii HOM05D006984 ORTHO05D008773 6.6e-73 278.1 193 69.4
Sabra05G0198700 Salix brachista HOM05D006984 ORTHO05D008773 1.5e-72 276.9 195 67.2
CiPaw.07G133500 Carya illinoinensis HOM05D006984 ORTHO05D008773 2.5e-72 276.2 255 55.3
TPR.G38185 Trifolium pratense HOM05D006984 ORTHO05D008773 2.5e-72 276.2 234 59.0
Manes.05G127800 Manihot esculenta HOM05D006984 ORTHO05D008773 1.2e-71 273.9 269 56.9
VMungo1309G1928 Vigna mungo HOM05D006984 ORTHO05D008773 4.7e-71 271.9 195 69.2
Medtr3g116110 Medicago truncatula HOM05D006984 ORTHO05D008773 1.1e-70 270.8 201 64.7
Psat5g008560 Pisum sativum HOM05D006984 ORTHO05D008773 1.1e-70 270.8 210 63.3
Lj1g0018204 Lotus japonicus HOM05D006984 ORTHO05D008773 1.8e-70 270.0 219 61.6
Cfa014138 Carpinus fangiana HOM05D006984 ORTHO05D008773 3.1e-70 269.2 204 66.2
MD16G1283100 Malus domestica HOM05D006984 ORTHO05D008773 3.1e-70 269.2 258 55.0
Eucgr.F01822 Eucalyptus grandis HOM05D006984 ORTHO05D008773 5.2e-70 268.5 197 63.5
RcHm_v2.0_Chr7g0216691 Rosa chinensis HOM05D006984 ORTHO05D008773 6.9e-70 268.1 193 67.9
Phvul.009G008400 Phaseolus vulgaris HOM05D006984 ORTHO05D008773 1.5e-69 266.9 200 67.0
Potri.005G256600 Populus trichocarpa HOM05D006984 ORTHO05D008773 4.4e-69 265.4 182 68.7
Thecc.08G099800 Theobroma cacao HOM05D006984 ORTHO05D008773 1.3e-68 263.8 187 69.0
EL10Ac1g01871 Beta vulgaris HOM05D006984 ORTHO05D008773 2.2e-68 263.1 200 66.0
AUR62024096 Chenopodium quinoa HOM05D006984 ORTHO05D008773 2.9e-68 262.7 198 62.6
AUR62035170 Chenopodium quinoa HOM05D006984 ORTHO05D008773 2.9e-68 262.7 198 62.6
Duzib116G0393 Durio zibethinus HOM05D006984 ORTHO05D008773 6.4e-68 261.5 216 61.6
Peaxi162Scf00064g01321 Petunia axillaris HOM05D006984 ORTHO05D008773 1.1e-67 260.8 193 65.8
Ca_15385_v3 Cicer arietinum L. HOM05D006984 ORTHO05D008773 1.4e-67 260.4 236 56.8
FAN18G2056 Fragaria x ananassa HOM05D006984 ORTHO05D008773 1.4e-67 260.4 194 67.5
CDE05G2674 Ceratophyllum demersum HOM05D006984 ORTHO05D008773 3.2e-67 259.2 235 58.3
Prupe.5G005500 Prunus persica HOM05D006984 ORTHO05D008773 3.2e-67 259.2 193 65.8
ECA232G4329 Erigeron canadensis HOM05D006984 ORTHO05D008773 4.2e-67 258.8 194 60.8
TAR628G1538 Trochodendron aralioides HOM05D006984 ORTHO05D008773 4.2e-67 258.8 207 60.4
Lsat_1_v5_gn_9_48361 Lactuca sativa HOM05D006984 ORTHO05D008773 5.4e-67 258.5 194 61.3
CAN.G208.41 Capsicum annuum HOM05D006984 ORTHO05D008773 7.1e-67 258.1 193 64.8
FvH4_5g26100 Fragaria vesca HOM05D006984 ORTHO05D008773 7.1e-67 258.1 194 67.0
HanXRQChr09g0241901 Helianthus annuus HOM05D006984 ORTHO05D008773 9.3e-67 257.7 194 60.8
Glyma.06G014500 Glycine max HOM05D006984 ORTHO05D008773 1.2e-66 257.3 218 61.5
Glyma.04G014500 Glycine max HOM05D006984 ORTHO05D008773 1.6e-66 256.9 196 65.8
Oeu035863.2 Olea europaea HOM05D006984 ORTHO05D008773 2.7e-66 256.1 194 62.9
Nn6g31626 Nelumbo nucifera HOM05D006984 ORTHO05D008773 3.5e-66 255.8 203 59.6
CSS0020436 Camellia sinensis var. sinensis HOM05D006984 ORTHO05D008773 7.8e-66 254.6 192 62.0
Cc10_g00260 Coffea canephora HOM05D006984 ORTHO05D008773 1.3e-65 253.8 236 57.2
Lj3P797T41 Lonicera japonica HOM05D006984 ORTHO05D008773 1.3e-65 253.8 166 70.5
CDE05G0055 Ceratophyllum demersum HOM05D006984 ORTHO05D008773 2.3e-65 253.1 165 72.1
CANSAT25G0748 Cannabis sativa HOM05D006984 ORTHO05D008773 3.0e-65 252.7 194 62.4
vmacro21767 Vaccinium macrocarpon HOM05D006984 ORTHO05D008773 3.0e-65 252.7 196 61.7
Solyc12g094720.3 Solanum lycopersicum HOM05D006984 ORTHO05D008773 3.9e-65 252.3 193 63.7
Sopen12g031620 Solanum pennellii HOM05D006984 ORTHO05D008773 3.9e-65 252.3 193 63.7
arahy.Tifrunner.gnm1.ann1.H7AW2T Arachis hypogaea HOM05D006984 ORTHO05D008773 8.7e-65 251.1 227 57.7
Haze_22863 Corylus avellana HOM05D006984 ORTHO05D008773 1.5e-64 250.4 223 57.8
Actinidia17077 Actinidia chinensis HOM05D006984 ORTHO05D008773 1.9e-64 250.0 187 61.5
Lj4A811G120 Lonicera japonica HOM05D006984 ORTHO05D008773 1.9e-64 250.0 160 71.9
PGSC0003DMG400029399 Solanum tuberosum HOM05D006984 ORTHO05D008773 1.9e-64 250.0 193 63.2
arahy.Tifrunner.gnm1.ann1.QT2TB5 Arachis hypogaea HOM05D006984 ORTHO05D008773 2.5e-64 249.6 228 57.0
Hund01834 Selenicereus undatus HOM05D006984 ORTHO05D008773 3.3e-64 249.2 179 65.4
Migut.N02987 Erythranthe guttata HOM05D006984 ORTHO05D008773 4.3e-64 248.8 203 60.1
Lalb_Chr23g0265511 Lupinus albus HOM05D006984 ORTHO05D008773 5.6e-64 248.4 192 64.6
ClCG08G009180 Citrullus lanatus HOM05D006984 ORTHO05D008773 1.6e-63 246.9 196 65.3
Gorai.002G221600 Gossypium raimondii HOM05D006984 ORTHO05D008773 1.6e-63 246.9 211 59.2
Gohir.A01G188600 Gossypium hirsutum HOM05D006984 ORTHO05D008773 2.1e-63 246.5 211 59.2
Gohir.D01G180900 Gossypium hirsutum HOM05D006984 ORTHO05D008773 2.8e-63 246.1 211 60.2
MBI04_g31208_MAGBIO Magnolia biondii HOM05D006984 ORTHO05D008773 2.8e-63 246.1 196 61.7
Os08g0512500 Oryza sativa ssp. japonica HOM05D006984 ORTHO05D008773 4.8e-63 245.4 196 61.7
MSTRG.24516 Avicennia marina HOM05D006984 ORTHO05D008773 1.1e-62 244.2 194 61.3
FAN13G1472 Fragaria x ananassa HOM05D006984 ORTHO05D008773 1.8e-62 243.4 227 57.7
Sc15g0004070 Simmondsia chinensis HOM05D006984 ORTHO05D008773 3.1e-62 242.7 166 67.5
Nitab4.5_0000407g0010 Nicotiana tabacum HOM05D006984 ORTHO05D008773 1.5e-61 240.4 181 62.4
PSO541G1597 Papaver somniferum HOM05D006984 ORTHO05D008773 1.5e-61 240.4 194 61.3
COL.COLO4_12298 Corchorus olitorius HOM05D006984 ORTHO05D008773 3.4e-61 239.2 196 63.3
Hma1.2p1_0489F.1_g164090 Hydrangea macrophylla HOM05D006984 ORTHO05D008773 5.8e-61 238.4 171 63.2
Aqoxy6G02992 Aquilegia oxysepala HOM05D006984 ORTHO05D008773 2.2e-60 236.5 211 53.6
FAN08G1099 Fragaria x ananassa HOM05D006984 ORTHO05D008773 3.2e-59 232.6 194 62.4
SGA_v2.0_scaffold220G42646 Striga asiatica HOM05D006984 ORTHO05D008773 5.4e-59 231.9 183 62.3
PGR083G2821 Punica granatum HOM05D006984 ORTHO05D008773 1.0e-57 227.6 220 55.5
FAN04G1410 Fragaria x ananassa HOM05D006984 ORTHO05D008773 1.5e-56 223.8 200 59.0
ATR0001G027 Amborella trichopoda HOM05D006984 ORTHO05D008773 4.3e-56 222.2 195 55.9
unitig_22.g5726 Utricularia gibba HOM05D006984 ORTHO05D008773 5.6e-56 221.9 193 59.6
Rhsim06G0003200 Rhododendron simsii HOM05D006984 ORTHO05D008773 1.3e-52 210.7 299 41.5
Hma1.2p1_0489F.1_g164100 Hydrangea macrophylla HOM05D006984 ORTHO05D008773 7.9e-50 201.4 125 71.2
Nitab4.5_0003423g0020 Nicotiana tabacum HOM05D006984 ORTHO05D008773 1.3e-47 194.1 186 53.8
Pp3c4_15070 Physcomitrium patens HOM05D006984 ORTHO05D008773 2.0e-45 186.8 258 41.1
Mapoly0008s0218 Marchantia polymorpha HOM05D006984 ORTHO05D008773 1.9e-43 180.3 220 42.3
AagrBONN_evm.TU.Sc2ySwM_117.1863 Anthoceros agrestis HOM05D006984 ORTHO05D008773 9.3e-43 177.9 182 46.7
Ah.11g041950 Amaranthus hybridus HOM05D006984 ORTHO05D008773 1.1e-40 171.0 136 64.0
SMO245G0004 Selaginella moellendorffii HOM05D006984 ORTHO05D008773 3.0e-33 146.4 187 35.8
Zm00001eb035340 Zea mays HOM05D006984 ORTHO05D008773 3.3e-32 142.9 148 51.4
CBR_g51937 Chara braunii HOM05D006984 ORTHO05D008773 1.1e-30 137.9 168 38.1
Medtr6g034285 Medicago truncatula HOM05D000394 ORTHO05D008773 6.1e-26 122.1 66 83.3
PGSC0003DMG400008742 Solanum tuberosum HOM05D006984 ORTHO05D008773 2.8e-23 113.2 105 56.2
PGSC0003DMG400021762 Solanum tuberosum HOM05D006984 ORTHO05D008773 1.8e-22 110.5 90 62.2
Cre10.g446350 Chlamydomonas reinhardtii HOM05D006984 ORTHO05D008773 3.1e-22 109.8 224 33.0
MCO13G452 Micromonas commoda HOM05D006984 ORTHO05D008773 1.0e-20 104.8 196 31.1
PRCOL_00004638 Prasinoderma coloniale HOM05D006984 ORTHO05D008773 2.1e-18 97.1 163 33.7
Sopen12g026780 Solanum pennellii HOM05D000004 ORTHO05D000002 3.3e-16 89.7 78 55.1
HPP92_015474 Vanilla planifolia HOM05D006984 ORTHO05D008773 1.0e-09 68.2 50 64.0
Psat7g136640 Pisum sativum HOM05D006984 ORTHO05D008773 1.4e-09 67.8 105 39.0
Psat6g152440 Pisum sativum HOM05D006984 ORTHO05D000789 1.1e-06 58.2 32 81.2
Psat6g152480 Pisum sativum HOM05D006984 ORTHO05D008773 1.1e-06 58.2 32 81.2


User provided reference genes

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