Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G36210 Arabidopsis lyrata HOM05D005792 ORTHO05D007171 9.5e-178 626.7 310 100.0
AT1G76150 Arabidopsis thaliana HOM05D005792 ORTHO05D007171 2.3e-176 622.1 310 98.7
Carub.0002s2304 Capsella rubella HOM05D005792 ORTHO05D007171 1.8e-168 595.9 310 93.9
BcaC08g47286 Brassica carinata HOM05D005792 ORTHO05D007171 2.7e-164 582.0 310 90.3
Sp5g31280 Schrenkiella parvula HOM05D005792 ORTHO05D007171 3.0e-163 578.6 311 91.0
CARHR069700 Cardamine hirsuta HOM05D005792 ORTHO05D007171 5.0e-163 577.8 310 91.6
Thhalv10018917m.g Eutrema salsugineum HOM05D005792 ORTHO05D007171 8.6e-163 577.0 310 90.3
C06p50100 Brassica napus HOM05D005792 ORTHO05D007171 1.0e-155 553.5 310 87.4
A07p41720 Brassica napus HOM05D005792 ORTHO05D007171 3.0e-155 552.0 310 87.7
BraA07t31701Z Brassica rapa HOM05D005792 ORTHO05D007171 3.0e-155 552.0 310 87.7
BcaNung05119 Brassica carinata HOM05D005792 ORTHO05D007171 2.0e-151 539.3 310 85.5
THA.LOC104813765 Tarenaya hassleriana HOM05D005792 ORTHO05D007171 2.3e-147 525.8 310 81.3
Aa31LG4G6270 Aethionema arabicum HOM05D005792 ORTHO05D007171 1.5e-146 523.1 310 83.9
BolC6t40050H Brassica oleracea HOM05D005792 ORTHO05D007171 5.2e-144 514.6 357 74.2
Potri.005G247600 Populus trichocarpa HOM05D005792 ORTHO05D007171 1.9e-133 479.6 307 73.0
Manes.18G007700 Manihot esculenta HOM05D005792 ORTHO05D007171 9.3e-133 477.2 305 72.8
Prupe.1G357300 Prunus persica HOM05D005792 ORTHO05D007171 2.3e-131 472.6 310 72.6
Thecc.08G054700 Theobroma cacao HOM05D005792 ORTHO05D007171 3.6e-129 465.3 305 72.1
Glyma.06G019900 Glycine max HOM05D005792 ORTHO05D007171 4.8e-129 464.9 305 71.8
CiPaw.08G070700 Carya illinoinensis HOM05D005792 ORTHO05D007171 8.1e-129 464.2 305 71.5
TWI36G1625 Tripterygium wilfordii HOM05D005792 ORTHO05D007171 4.0e-128 461.8 308 71.8
BcaC08g47109 Brassica carinata HOM05D005792 ORTHO05D007171 9.0e-128 460.7 304 77.0
Psat5g010960 Pisum sativum HOM05D005792 ORTHO05D007171 2.0e-127 459.5 305 70.5
Atru.chr13.181 Acer truncatum HOM05D005792 ORTHO05D007171 3.4e-127 458.8 306 72.2
CiPaw.08G070500 Carya illinoinensis HOM05D005792 ORTHO05D007171 3.4e-127 458.8 305 70.8
Ca_15448_v3 Cicer arietinum L. HOM05D005792 ORTHO05D007171 7.6e-127 457.6 305 70.2
Eucgr.F01710 Eucalyptus grandis HOM05D005792 ORTHO05D007171 7.6e-127 457.6 310 69.7
Lalb_Chr23g0265871 Lupinus albus HOM05D005792 ORTHO05D007171 2.2e-126 456.1 310 69.4
CsaV3_2G024540 Cucumis sativus L. HOM05D005792 ORTHO05D007171 3.8e-126 455.3 310 69.4
VMungo1309G0997 Vigna mungo HOM05D005792 ORTHO05D007171 3.8e-126 455.3 305 69.8
Medtr3g115040 Medicago truncatula HOM05D005792 ORTHO05D007171 6.4e-126 454.5 305 70.2
Atru.chr13.183 Acer truncatum HOM05D005792 ORTHO05D007171 1.1e-125 453.8 310 69.4
CANSAT51G0003 Cannabis sativa HOM05D005792 ORTHO05D007171 1.1e-125 453.8 310 70.0
FvH4_2g37800 Fragaria vesca HOM05D005792 ORTHO05D007171 2.4e-125 452.6 304 71.7
Glyma.04G019600 Glycine max HOM05D005792 ORTHO05D007171 1.2e-124 450.3 311 69.5
PGR083G0297 Punica granatum HOM05D005792 ORTHO05D007171 2.1e-124 449.5 305 68.9
Lj1g0011663 Lotus japonicus HOM05D005792 ORTHO05D007171 6.0e-124 448.0 304 69.7
MD08G1005200 Malus domestica HOM05D005792 ORTHO05D007171 6.0e-124 448.0 305 70.2
MELO3C011330.2 Cucumis melo HOM05D005792 ORTHO05D007171 7.9e-124 447.6 324 67.3
QL02p013536 Quercus lobata HOM05D005792 ORTHO05D007171 7.9e-124 447.6 311 68.8
RcHm_v2.0_Chr6g0303911 Rosa chinensis HOM05D005792 ORTHO05D007171 2.3e-123 446.0 305 70.2
Sed0026749 Sechium edule HOM05D005792 ORTHO05D007171 2.3e-123 446.0 310 68.1
Duzib093G0813 Durio zibethinus HOM05D005792 ORTHO05D007171 3.9e-123 445.3 306 66.7
Gohir.D05G256800 Gossypium hirsutum HOM05D005792 ORTHO05D007171 6.7e-123 444.5 306 68.3
Gorai.009G268300 Gossypium raimondii HOM05D005792 ORTHO05D007171 8.7e-123 444.1 306 68.3
Manes.05G141100 Manihot esculenta HOM05D005792 ORTHO05D007171 5.6e-122 441.4 310 67.1
Atru.chr1.2256 Acer truncatum HOM05D005792 ORTHO05D007171 2.1e-121 439.5 309 68.0
Sed0027939 Sechium edule HOM05D005792 ORTHO05D007171 2.4e-120 436.0 310 66.8
Dinv39569 Davidia involucrata HOM05D005792 ORTHO05D007171 3.1e-120 435.6 305 66.9
Nitab4.5_0000498g0200 Nicotiana tabacum HOM05D005792 ORTHO05D007171 6.9e-120 434.5 305 67.5
Ciclev10001939m.g Citrus clementina HOM05D005792 ORTHO05D007171 9.0e-120 434.1 306 68.0
arahy.Tifrunner.gnm1.ann1.NZM2IS Arachis hypogaea HOM05D005792 ORTHO05D007171 1.2e-119 433.7 336 62.8
Nitab4.5_0002353g0010 Nicotiana tabacum HOM05D005792 ORTHO05D007171 1.7e-118 429.9 303 66.7
GSVIVG01008709001 Vitis vinifera HOM05D005792 ORTHO05D007171 2.9e-118 429.1 305 65.9
Aqoxy6G01867 Aquilegia oxysepala HOM05D005792 ORTHO05D007171 4.9e-118 428.3 307 64.5
CSS0018708 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 4.9e-118 428.3 310 65.2
CSS0011850 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 2.4e-117 426.0 310 64.5
CAN.G401.3 Capsicum annuum HOM05D005792 ORTHO05D007171 2.4e-117 426.0 306 67.0
Duzib116G0262 Durio zibethinus HOM05D005792 ORTHO05D007171 7.1e-117 424.5 281 70.1
Solyc12g094450.3 Solanum lycopersicum HOM05D005792 ORTHO05D007171 7.1e-117 424.5 306 65.4
EL10Ac1g02028 Beta vulgaris HOM05D005792 ORTHO05D007171 2.1e-116 422.9 306 65.0
HanXRQChr14g0429001 Helianthus annuus HOM05D005792 ORTHO05D007171 2.1e-116 422.9 304 66.1
Hund05134 Selenicereus undatus HOM05D005792 ORTHO05D007171 2.1e-116 422.9 302 65.9
ECA238G1749 Erigeron canadensis HOM05D005792 ORTHO05D007171 2.7e-116 422.5 306 66.0
CSS0016825 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 3.5e-116 422.2 315 64.1
AUR62013837 Chenopodium quinoa HOM05D005792 ORTHO05D007171 3.5e-116 422.2 302 65.6
Peaxi162Scf00064g00910 Petunia axillaris HOM05D005792 ORTHO05D007171 3.5e-116 422.2 306 66.7
Sopen12g031340 Solanum pennellii HOM05D005792 ORTHO05D007171 3.5e-116 422.2 306 65.0
Cfa014030 Carpinus fangiana HOM05D000201 ORTHO05D004673 5.1e-115 418.3 281 70.5
vmacro21840 Vaccinium macrocarpon HOM05D005792 ORTHO05D007171 6.7e-115 417.9 336 59.8
Nn5g30890 Nelumbo nucifera HOM05D005792 ORTHO05D007171 1.9e-114 416.4 307 63.5
Migut.C00916 Erythranthe guttata HOM05D005792 ORTHO05D007171 2.5e-114 416.0 305 64.6
Lsat_1_v5_gn_2_5940 Lactuca sativa HOM05D005792 ORTHO05D007171 5.6e-114 414.8 307 65.5
Hma1.2p1_1260F.1_g270990 Hydrangea macrophylla HOM05D005792 ORTHO05D007171 7.4e-114 414.5 305 64.6
Sc26g0004560 Simmondsia chinensis HOM05D005792 ORTHO05D007171 1.6e-113 413.3 300 65.7
PGSC0003DMG400029326 Solanum tuberosum HOM05D005792 ORTHO05D007171 6.2e-113 411.4 335 60.0
Haze_22736 Corylus avellana HOM05D005792 ORTHO05D007171 1.1e-112 410.6 290 67.6
Cc10_g00990 Coffea canephora HOM05D005792 ORTHO05D007171 9.0e-112 407.5 316 62.3
unitig_747.g21523 Utricularia gibba HOM05D005792 ORTHO05D007171 1.2e-111 407.1 308 63.6
PSO541G2987 Papaver somniferum HOM05D005792 ORTHO05D007171 3.4e-111 405.6 300 64.0
Lj4C15T2 Lonicera japonica HOM05D005792 ORTHO05D007171 4.5e-111 405.2 305 63.0
Gohir.A05G255200 Gossypium hirsutum HOM05D005792 ORTHO05D007171 1.0e-110 404.1 310 63.9
Rhsim06G0009800 Rhododendron simsii HOM05D005792 ORTHO05D007171 1.6e-108 396.7 305 62.3
Os09g0544900 Oryza sativa ssp. japonica HOM05D005792 ORTHO05D007171 2.1e-108 396.4 303 62.4
FAN27G1567 Fragaria x ananassa HOM05D000201 ORTHO05D004673 1.0e-107 394.0 289 68.2
ClCG08G013930 Citrullus lanatus HOM05D005792 ORTHO05D007171 3.0e-107 392.5 350 57.7
SalBow7G0964 Salvia bowleyana HOM05D005792 ORTHO05D007171 5.1e-107 391.7 307 59.9
FAN15G3656 Fragaria x ananassa HOM05D000201 ORTHO05D004673 2.2e-105 386.3 282 68.4
MBI08_g05391_MAGBIO Magnolia biondii HOM05D005792 ORTHO05D007171 1.4e-104 383.6 283 64.7
TAR625G0413 Trochodendron aralioides HOM05D005792 ORTHO05D007171 3.1e-104 382.5 284 66.9
Actinidia15473 Actinidia chinensis HOM05D005792 ORTHO05D007171 1.3e-102 377.1 320 58.8
SGA_v2.0_scaffold351G49656 Striga asiatica HOM05D005792 ORTHO05D007171 5.0e-102 375.2 311 58.8
DCAR_016749 Daucus carota HOM05D005792 ORTHO05D007171 2.7e-100 369.4 365 51.8
Pp3c4_24330 Physcomitrium patens HOM05D005792 ORTHO05D007171 3.2e-93 345.9 309 56.3
SHI08027 Sapria himalayana HOM05D005792 ORTHO05D007171 6.1e-92 341.7 296 57.8
COL.COLO4_26053 Corchorus olitorius HOM05D005792 ORTHO05D007171 1.8e-91 340.1 311 57.2
Ah.11g040640 Amaranthus hybridus HOM05D005792 ORTHO05D007171 5.1e-91 338.6 306 54.9
DCAR_013899 Daucus carota HOM05D005792 ORTHO05D007171 2.0e-90 336.7 305 55.7
Nitab4.5_0000588g0300 Nicotiana tabacum HOM05D005792 ORTHO05D007171 9.1e-88 327.8 305 55.7
PSO675G2870 Papaver somniferum HOM05D005792 ORTHO05D007171 5.9e-87 325.1 300 55.3
Haze_22722 Corylus avellana HOM05D005792 ORTHO05D007171 2.5e-85 319.7 282 59.2
Zm00001eb104070 Zea mays HOM05D005792 ORTHO05D007171 3.2e-85 319.3 234 65.0
Phvul.009G020900 Phaseolus vulgaris HOM05D005792 ORTHO05D007171 3.9e-83 312.4 218 67.4
Gohir.D02G118150 Gossypium hirsutum HOM05D005792 ORTHO05D007171 7.4e-82 308.1 224 66.5
SMO174G0111 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 7.4e-82 308.1 300 51.7
AUR62036768 Chenopodium quinoa HOM05D005792 ORTHO05D007171 4.8e-81 305.4 283 55.1
arahy.Tifrunner.gnm1.ann1.CIDL5D Arachis hypogaea HOM05D005792 ORTHO05D007171 3.1e-72 276.2 197 66.0
Mapoly0135s0031 Marchantia polymorpha HOM05D005792 ORTHO05D007171 2.2e-70 270.0 311 45.3
Zm00001eb321160 Zea mays HOM05D005792 ORTHO05D007171 6.1e-68 261.9 212 60.4
Oeu021471.1 Olea europaea HOM05D005792 ORTHO05D007171 1.0e-67 261.2 194 62.4
MSTRG.25290 Avicennia marina HOM05D005792 ORTHO05D007171 2.8e-65 253.1 194 60.3
ATR0661G150 Amborella trichopoda HOM05D005792 ORTHO05D007171 1.4e-64 250.8 192 64.6
TAR625G0324 Trochodendron aralioides HOM05D005792 ORTHO05D007171 9.1e-64 248.1 167 71.3
SEGI_22358 Sequoiadendron giganteum HOM05D005792 ORTHO05D007171 1.1e-61 241.1 198 60.1
Sabra02G0010800 Salix brachista HOM05D005792 ORTHO05D007171 7.5e-58 228.4 237 52.7
TPR.G753 Trifolium pratense HOM05D005792 ORTHO05D007171 5.2e-51 205.7 137 72.3
CBR_g50912 Chara braunii HOM05D005792 ORTHO05D007171 6.8e-51 205.3 343 36.4
AagrBONN_evm.TU.Sc2ySwM_117.3246 Anthoceros agrestis HOM05D005792 ORTHO05D007171 2.2e-49 200.3 206 50.5
CDE05G1591 Ceratophyllum demersum HOM05D005792 ORTHO05D007171 1.8e-48 197.2 150 60.0
TPR.G38109 Trifolium pratense HOM05D005792 ORTHO05D007171 1.8e-48 197.2 310 38.4
Actinidia17028 Actinidia chinensis HOM05D005792 ORTHO05D007171 2.8e-44 183.3 159 57.2
Haze_26844 Corylus avellana HOM05D005792 ORTHO05D007171 1.7e-38 164.1 292 35.6
CSS0030340 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 6.6e-38 162.2 131 59.5
TAR625G0970 Trochodendron aralioides HOM05D005792 ORTHO05D007171 2.0e-34 150.6 103 66.0
Cre06.g308100 Chlamydomonas reinhardtii HOM05D005792 ORTHO05D007171 2.9e-33 146.7 289 32.9
HPP92_014386 Vanilla planifolia HOM05D005792 ORTHO05D007171 3.5e-31 139.8 113 58.4
Hund05135 Selenicereus undatus HOM05D005792 ORTHO05D007171 3.6e-28 129.8 271 31.4
CBR_g22029 Chara braunii HOM05D005792 ORTHO05D007171 3.2e-24 116.7 93 59.1
SalBow6G2635 Salvia bowleyana HOM05D005792 ORTHO05D007171 4.6e-23 112.8 83 60.2
SMO174G0016 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 4.2e-16 89.7 82 54.9
Sabra02G0010700 Salix brachista HOM05D000201 ORTHO05D000490 1.9e-13 80.9 59 61.0
ATR0661G053 Amborella trichopoda HOM05D005792 ORTHO05D007171 1.3e-12 78.2 65 58.5
COL.COLO4_12452 Corchorus olitorius HOM05D005792 ORTHO05D007171 6.2e-12 75.9 71 56.3
Mapoly0033s0029 Marchantia polymorpha HOM05D005792 ORTHO05D007171 2.4e-11 73.9 161 30.4
SMO174G0053 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 9.0e-11 72.0 77 46.8
Cpa.g.sc26.236 Carica papaya HOM05D005792 ORTHO05D007171 2.2e-09 67.4 36 83.3
SEGI_02138 Sequoiadendron giganteum HOM05D005792 ORTHO05D007171 5.4e-08 62.8 49 53.1


User provided reference genes

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