Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G36100 Arabidopsis lyrata HOM05D007648 ORTHO05D009613 9.5e-37 156.4 81 100.0
AT1G76065 Arabidopsis thaliana HOM05D007648 ORTHO05D009613 1.5e-34 149.1 81 95.1
Carub.0002s2295 Capsella rubella HOM05D007648 ORTHO05D009613 1.7e-33 145.6 78 94.9
CARHR069590 Cardamine hirsuta HOM05D007648 ORTHO05D009613 1.7e-33 145.6 78 94.9
Thhalv10019391m.g Eutrema salsugineum HOM05D007648 ORTHO05D009613 2.0e-31 138.7 78 91.0
Aa31LG4G6180 Aethionema arabicum HOM05D007648 ORTHO05D009613 4.5e-31 137.5 80 87.5
THA.LOC104811443 Tarenaya hassleriana HOM05D007648 ORTHO05D009613 1.1e-29 132.9 82 81.7
Lsat_1_v5_gn_5_1580 Lactuca sativa HOM05D007648 ORTHO05D009613 1.5e-29 132.5 81 81.5
BraA08t32933Z Brassica rapa HOM05D007648 ORTHO05D009613 2.8e-28 128.3 78 84.6
A08p09340 Brassica napus HOM05D007648 ORTHO05D009613 4.7e-28 127.5 78 84.6
BolC8t48002H Brassica oleracea HOM05D007648 ORTHO05D009613 4.7e-28 127.5 78 84.6
HanXRQChr06g0185111 Helianthus annuus HOM05D007648 ORTHO05D009613 8.0e-28 126.7 80 78.8
QL02p012929 Quercus lobata HOM05D007648 ORTHO05D009613 8.0e-28 126.7 80 76.2
BcaC07g37632 Brassica carinata HOM05D007648 ORTHO05D009613 1.4e-27 125.9 78 83.3
BcaB07g30075 Brassica carinata HOM05D007648 ORTHO05D009613 1.8e-27 125.6 78 83.3
Sc02g0008880 Simmondsia chinensis HOM05D007648 ORTHO05D009613 4.0e-27 124.4 80 75.0
Sc02g0008840 Simmondsia chinensis HOM05D007648 ORTHO05D009613 6.8e-27 123.6 80 75.0
TAR625G0376 Trochodendron aralioides HOM05D007648 ORTHO05D009613 6.8e-27 123.6 81 76.5
GSVIVG01008741001 Vitis vinifera HOM05D007648 ORTHO05D009613 8.9e-27 123.2 78 79.5
Manes.05G142600 Manihot esculenta HOM05D007648 ORTHO05D009613 2.0e-26 122.1 80 76.2
Ciclev10003012m.g Citrus clementina HOM05D007648 ORTHO05D009613 2.6e-26 121.7 81 74.1
Dinv31891 Davidia involucrata HOM05D007648 ORTHO05D009613 4.4e-26 120.9 79 73.4
CiPaw.07G143700 Carya illinoinensis HOM05D007648 ORTHO05D009613 5.7e-26 120.6 81 72.8
BraA02t08664Z Brassica rapa HOM05D007648 ORTHO05D009613 7.5e-26 120.2 75 82.7
RcHm_v2.0_Chr6g0303661 Rosa chinensis HOM05D007648 ORTHO05D009613 7.5e-26 120.2 77 75.3
Atru.chr13.217 Acer truncatum HOM05D007648 ORTHO05D009613 1.7e-25 119.0 79 75.9
arahy.Tifrunner.gnm1.ann1.8I3IQY Arachis hypogaea HOM05D007648 ORTHO05D009613 2.2e-25 118.6 80 71.2
EL10Ac1g02083 Beta vulgaris HOM05D000399 ORTHO05D000304 2.2e-25 118.6 78 78.2
Haze_22702 Corylus avellana HOM05D007648 ORTHO05D009613 2.2e-25 118.6 79 73.4
Os02g0667000 Oryza sativa ssp. japonica HOM05D007648 ORTHO05D009613 2.2e-25 118.6 77 75.3
ClCG05G015420 Citrullus lanatus HOM05D007648 ORTHO05D009613 3.7e-25 117.9 80 71.2
Eucgr.F03708 Eucalyptus grandis HOM05D007648 ORTHO05D009613 3.7e-25 117.9 78 73.1
arahy.Tifrunner.gnm1.ann1.EILY3I Arachis hypogaea HOM05D007648 ORTHO05D009613 4.9e-25 117.5 78 73.1
Ah.00g000660 Amaranthus hybridus HOM05D007648 ORTHO05D009613 6.4e-25 117.1 78 74.4
Thecc.08G051700 Theobroma cacao HOM05D007648 ORTHO05D009613 6.4e-25 117.1 80 72.5
CSS0030217 Camellia sinensis var. sinensis HOM05D007648 ORTHO05D009613 8.3e-25 116.7 80 73.8
ECA238G3742 Erigeron canadensis HOM05D000002 ORTHO05D000001 8.3e-25 116.7 74 77.0
FvH4_2g37960 Fragaria vesca HOM05D007648 ORTHO05D009613 8.3e-25 116.7 76 73.7
Lj5g0008894 Lotus japonicus HOM05D007648 ORTHO05D009613 1.4e-24 115.9 78 73.1
PSO210G3155 Papaver somniferum HOM05D007648 ORTHO05D009613 1.4e-24 115.9 75 76.0
TWI12G0541 Tripterygium wilfordii HOM05D007648 ORTHO05D009613 1.4e-24 115.9 77 75.3
Ca_13484_v3 Cicer arietinum L. HOM05D007648 ORTHO05D009613 1.8e-24 115.5 78 73.1
Psat6g001120 Pisum sativum HOM05D007648 ORTHO05D009613 1.8e-24 115.5 78 73.1
Hund05152 Selenicereus undatus HOM05D000399 ORTHO05D000304 2.4e-24 115.2 78 71.8
Sabra14G0141300 Salix brachista HOM05D000525 ORTHO05D001368 3.2e-24 114.8 80 71.2
Duzib093G2040 Durio zibethinus HOM05D007648 ORTHO05D009613 5.4e-24 114.0 81 71.6
FAN15G0474 Fragaria x ananassa HOM05D007648 ORTHO05D009613 5.4e-24 114.0 76 72.4
Lalb_Chr19g0131601 Lupinus albus HOM05D007648 ORTHO05D009613 5.4e-24 114.0 78 70.5
FAN20G1741 Fragaria x ananassa HOM05D007648 ORTHO05D009613 7.0e-24 113.6 76 72.4
Medtr1g026100 Medicago truncatula HOM05D007648 ORTHO05D009613 7.0e-24 113.6 78 70.5
Prupe.1G359500 Prunus persica HOM05D007648 ORTHO05D009613 7.0e-24 113.6 77 68.8
COL.COLO4_26084 Corchorus olitorius HOM05D007648 ORTHO05D009613 9.2e-24 113.2 80 71.2
Sed0006121 Sechium edule HOM05D007648 ORTHO05D009613 9.2e-24 113.2 81 67.9
Actinidia29767 Actinidia chinensis HOM05D007648 ORTHO05D009613 1.2e-23 112.8 77 72.7
Phvul.001G002600 Phaseolus vulgaris HOM05D007648 ORTHO05D009613 2.0e-23 112.1 78 70.5
Potri.014G181400 Populus trichocarpa HOM05D007648 ORTHO05D009613 2.0e-23 112.1 80 70.0
Aqoxy5G01099 Aquilegia oxysepala HOM05D007648 ORTHO05D009613 2.7e-23 111.7 81 67.9
Phvul.001G002300 Phaseolus vulgaris HOM05D007648 ORTHO05D009613 3.5e-23 111.3 78 70.5
Gohir.D01G035600 Gossypium hirsutum HOM05D007648 ORTHO05D009613 4.6e-23 110.9 77 71.4
Gorai.002G043700 Gossypium raimondii HOM05D007648 ORTHO05D009613 5.9e-23 110.5 77 71.4
MELO3C003728.2 Cucumis melo HOM05D007648 ORTHO05D009613 7.8e-23 110.2 77 70.1
Gohir.A01G044700 Gossypium hirsutum HOM05D007648 ORTHO05D009613 1.0e-22 109.8 77 70.1
MD08G1007600 Malus domestica HOM05D007648 ORTHO05D009613 1.0e-22 109.8 78 67.9
Glyma.17G261200 Glycine max HOM05D007648 ORTHO05D009613 1.3e-22 109.4 77 66.2
CAN.G22.4 Capsicum annuum HOM05D007648 ORTHO05D009613 1.7e-22 109.0 78 65.4
CsaV3_3G046120 Cucumis sativus L. HOM05D007648 ORTHO05D009613 1.7e-22 109.0 77 70.1
MD15G1006800 Malus domestica HOM05D007648 ORTHO05D009613 1.7e-22 109.0 78 66.7
Rhsim07G0248300 Rhododendron simsii HOM05D007648 ORTHO05D009613 1.7e-22 109.0 81 64.2
CDE04G2628 Ceratophyllum demersum HOM05D007648 ORTHO05D009613 3.0e-22 108.2 76 73.7
PGSC0003DMG400023820 Solanum tuberosum HOM05D007648 ORTHO05D009613 3.9e-22 107.8 78 64.1
BolC2t11627H Brassica oleracea HOM05D007648 ORTHO05D009613 8.6e-22 106.7 78 74.4
DCAR_021446 Daucus carota HOM05D007648 ORTHO05D009613 8.6e-22 106.7 78 67.9
Sopen06g017690 Solanum pennellii HOM05D007648 ORTHO05D009613 8.6e-22 106.7 78 62.8
Rhsim07G0248100 Rhododendron simsii HOM05D007648 ORTHO05D009613 1.1e-21 106.3 77 66.2
HPP92_003481 Vanilla planifolia HOM05D007648 ORTHO05D009613 1.1e-21 106.3 77 67.5
HPP92_026879 Vanilla planifolia HOM05D007648 ORTHO05D009613 1.1e-21 106.3 77 68.8
VMungo0647G0751 Vigna mungo HOM05D007648 ORTHO05D009613 1.5e-21 105.9 75 68.0
Cc10_g01140 Coffea canephora HOM05D007648 ORTHO05D009613 1.9e-21 105.5 76 67.1
vmacro17151 Vaccinium macrocarpon HOM05D007648 ORTHO05D009613 3.3e-21 104.8 81 64.2
MBI05_g46751_MAGBIO Magnolia biondii HOM05D007648 ORTHO05D009613 6.2e-20 100.5 71 67.6
CAN.G22.7 Capsicum annuum HOM05D007648 ORTHO05D009613 8.0e-20 100.1 78 60.3
Migut.C00899 Erythranthe guttata HOM05D007648 ORTHO05D009613 1.4e-19 99.4 78 61.5
SalBow7G1731 Salvia bowleyana HOM05D007648 ORTHO05D009613 2.3e-19 98.6 81 60.5
A02p36690 Brassica napus HOM05D007648 ORTHO05D009613 1.2e-18 96.3 60 80.0
C02p55750 Brassica napus HOM05D007648 ORTHO05D009613 3.4e-18 94.7 66 74.2
Nitab4.5_0004193g0030 Nicotiana tabacum HOM05D000998 ORTHO05D000806 4.9e-17 90.9 66 63.6
AUR62036713 Chenopodium quinoa HOM05D000399 ORTHO05D000304 3.2e-16 88.2 132 43.2
Peaxi162Scf00394g00212 Petunia axillaris HOM05D007648 ORTHO05D009613 4.6e-15 84.3 68 58.8
Mapoly0088s0028 Marchantia polymorpha HOM05D007648 ORTHO05D009613 1.7e-14 82.4 77 51.9
Nitab4.5_0000716g0050 Nicotiana tabacum HOM05D000998 ORTHO05D000806 1.7e-14 82.4 61 62.3
AagrBONN_evm.TU.Sc2ySwM_344.3278 Anthoceros agrestis HOM05D007648 ORTHO05D009613 4.3e-13 77.8 76 52.6
Pp3c8_20950 Physcomitrium patens HOM05D007648 ORTHO05D009613 9.5e-13 76.6 77 49.4
Os03g0159800 Oryza sativa ssp. japonica HOM05D007648 ORTHO05D009613 2.8e-12 75.1 45 77.8
AUR62013884 Chenopodium quinoa HOM05D007648 ORTHO05D009613 4.7e-12 74.3 44 77.3
unitig_748.g7721 Utricularia gibba HOM05D007648 ORTHO05D009613 1.7e-09 65.9 46 67.4
SalBow1G6040 Salvia bowleyana HOM05D038733 ORTHO05D009613 7.1e-08 60.5 46 60.9
SalBow7G3523 Salvia bowleyana HOM05D038733 ORTHO05D009613 7.1e-08 60.5 46 60.9
BcaC03g17585 Brassica carinata HOM05D007648 ORTHO05D009613 9.2e-08 60.1 76 52.6
Actinidia37950 Actinidia chinensis HOM05D007648 ORTHO05D009613 2.7e-07 58.5 38 65.8
C02p55660 Brassica napus HOM05D000430 ORTHO05D021673 8.6e-06 53.5 31 87.1
BolC2t11621H Brassica oleracea HOM05D000874 ORTHO05D021673 8.6e-06 53.5 31 87.1


User provided reference genes

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