Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G36040 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 2.8e-143 511.9 260 100.0
AT1G76020 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 2.9e-111 405.6 256 80.9
Carub.0002s2290 Capsella rubella HOM05D000901 ORTHO05D004766 6.6e-100 367.9 251 75.7
Thhalv10019591m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 3.8e-95 352.1 247 72.1
Sp5g31130 Schrenkiella parvula HOM05D000901 ORTHO05D004766 6.4e-95 351.3 249 71.9
A07p41510 Brassica napus HOM05D000901 ORTHO05D004766 7.4e-91 337.8 251 68.5
BcaC03g15640 Brassica carinata HOM05D000901 ORTHO05D004766 1.3e-90 337.0 249 69.5
BolC2t09354H Brassica oleracea HOM05D000901 ORTHO05D004766 3.7e-90 335.5 249 68.7
C02p33510 Brassica napus HOM05D000901 ORTHO05D004766 1.4e-89 333.6 249 68.7
C06p49920 Brassica napus HOM05D000901 ORTHO05D004766 1.4e-89 333.6 251 67.3
BraA02t07071Z Brassica rapa HOM05D000901 ORTHO05D004766 2.4e-89 332.8 247 68.8
A02p20390 Brassica napus HOM05D000901 ORTHO05D004766 5.3e-89 331.6 247 68.8
CARHR069550 Cardamine hirsuta HOM05D000901 ORTHO05D004766 6.9e-89 331.3 244 69.3
BcaC08g47093 Brassica carinata HOM05D000901 ORTHO05D004766 1.2e-88 330.5 249 67.9
BcaC08g47306 Brassica carinata HOM05D000901 ORTHO05D004766 4.5e-88 328.6 251 66.5
BcaC08g47307 Brassica carinata HOM05D000901 ORTHO05D004766 4.5e-88 328.6 251 66.5
BolC6t40030H Brassica oleracea HOM05D000901 ORTHO05D004766 1.6e-85 320.1 269 62.5
Aa31LG4G6150 Aethionema arabicum HOM05D000901 ORTHO05D004766 7.9e-85 317.8 249 65.5
BraA07t31683Z Brassica rapa HOM05D000901 ORTHO05D004766 1.5e-83 313.5 270 61.5
Carub.0001s1975 Capsella rubella HOM05D000901 ORTHO05D004766 6.2e-82 308.1 261 60.2
Sp1g17990 Schrenkiella parvula HOM05D000901 ORTHO05D004766 1.5e-80 303.5 258 60.5
AT1G20225 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 3.2e-78 295.8 249 60.6
AL1G33070 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 4.2e-78 295.4 249 60.2
C05p18770 Brassica napus HOM05D000901 ORTHO05D004766 2.1e-77 293.1 258 58.9
BcaB07g32030 Brassica carinata HOM05D000901 ORTHO05D004766 3.5e-77 292.4 249 59.8
THA.LOC104813773 Tarenaya hassleriana HOM05D000901 ORTHO05D004766 4.6e-77 292.0 261 59.8
BolC5t30582H Brassica oleracea HOM05D000901 ORTHO05D004766 1.0e-76 290.8 258 58.5
A06p16340 Brassica napus HOM05D000901 ORTHO05D004766 2.3e-76 289.7 258 57.8
BraA06t24738Z Brassica rapa HOM05D000901 ORTHO05D004766 3.9e-76 288.9 258 58.1
BcaC05g25925 Brassica carinata HOM05D000901 ORTHO05D004766 6.7e-76 288.1 247 59.9
CARHR020720 Cardamine hirsuta HOM05D000901 ORTHO05D004766 6.7e-76 288.1 249 58.2
Aa31LG7G4620 Aethionema arabicum HOM05D000901 ORTHO05D004766 5.3e-73 278.5 267 55.4
COL.COLO4_26098 Corchorus olitorius HOM05D000901 ORTHO05D004766 3.3e-67 259.2 250 51.2
Sabra05G0189000 Salix brachista HOM05D000901 ORTHO05D004766 4.3e-67 258.8 255 52.9
ClCG08G014120 Citrullus lanatus HOM05D000901 ORTHO05D004766 7.4e-67 258.1 249 53.4
Cpa.g.sc26.277 Carica papaya HOM05D000901 ORTHO05D004766 1.3e-66 257.3 245 52.7
FAN20G3106 Fragaria x ananassa HOM05D000901 ORTHO05D004766 1.7e-66 256.9 247 55.1
Thecc.08G049900 Theobroma cacao HOM05D000901 ORTHO05D004766 2.2e-66 256.5 239 54.0
FvH4_2g38030 Fragaria vesca HOM05D000901 ORTHO05D004766 3.7e-66 255.8 252 54.4
Gorai.010G001700 Gossypium raimondii HOM05D000901 ORTHO05D004766 8.2e-66 254.6 247 50.2
Potri.005G244400 Populus trichocarpa HOM05D000901 ORTHO05D004766 8.2e-66 254.6 252 50.8
Manes.05G143600 Manihot esculenta HOM05D000901 ORTHO05D004766 1.4e-65 253.8 243 52.3
Glyma.04G021300 Glycine max HOM05D000901 ORTHO05D004766 3.1e-65 252.7 242 54.1
RcHm_v2.0_Chr6g0303571 Rosa chinensis HOM05D000901 ORTHO05D004766 4.1e-65 252.3 252 53.2
TWI56G0802 Tripterygium wilfordii HOM05D000901 ORTHO05D004766 2.0e-64 250.0 247 51.8
Prupe.1G360400 Prunus persica HOM05D000901 ORTHO05D004766 2.6e-64 249.6 243 54.3
arahy.Tifrunner.gnm1.ann1.K685T3 Arachis hypogaea HOM05D000901 ORTHO05D004766 5.9e-64 248.4 245 52.2
arahy.Tifrunner.gnm1.ann1.774XMB Arachis hypogaea HOM05D000901 ORTHO05D004766 7.7e-64 248.1 245 52.2
MD08G1008700 Malus domestica HOM05D000901 ORTHO05D004766 7.7e-64 248.1 242 55.0
MELO3C011351.2 Cucumis melo HOM05D000901 ORTHO05D004766 1.3e-63 247.3 232 53.4
Ciclev10002332m.g Citrus clementina HOM05D000901 ORTHO05D004766 2.9e-63 246.1 235 52.8
MD15G1007500 Malus domestica HOM05D000901 ORTHO05D004766 2.9e-63 246.1 246 52.8
Duzib041G0373 Durio zibethinus HOM05D000901 ORTHO05D004766 3.8e-63 245.7 250 50.0
Phvul.009G019200 Phaseolus vulgaris HOM05D000901 ORTHO05D004766 6.5e-63 245.0 250 52.0
Glyma.04G021400 Glycine max HOM05D000901 ORTHO05D004766 8.5e-63 244.6 248 52.0
VMungo1309G2869 Vigna mungo HOM05D002716 ORTHO05D003324 8.5e-63 244.6 246 52.4
CiPaw.07G144500 Carya illinoinensis HOM05D000901 ORTHO05D004766 1.9e-62 243.4 245 52.7
Medtr0332s0020 Medicago truncatula HOM05D000901 ORTHO05D004766 2.5e-62 243.0 247 49.4
EL10Ac1g02116 Beta vulgaris HOM05D000901 ORTHO05D004766 5.5e-62 241.9 251 48.6
Sed0006708 Sechium edule HOM05D000901 ORTHO05D004766 7.2e-62 241.5 228 53.5
CANSAT25G0446 Cannabis sativa HOM05D000901 ORTHO05D004766 9.4e-62 241.1 237 54.9
Cfa013996 Carpinus fangiana HOM05D000901 ORTHO05D004766 9.4e-62 241.1 239 52.3
AUR62036698 Chenopodium quinoa HOM05D000901 ORTHO05D004766 1.2e-61 240.7 247 49.8
CsaV3_2G024310 Cucumis sativus L. HOM05D000901 ORTHO05D004766 1.2e-61 240.7 244 50.8
Thecc.08G050000 Theobroma cacao HOM05D000901 ORTHO05D004766 4.6e-61 238.8 249 49.4
QL02p012636 Quercus lobata HOM05D000901 ORTHO05D004766 7.9e-61 238.0 247 51.0
Hund05158 Selenicereus undatus HOM05D000901 ORTHO05D004766 7.9e-61 238.0 249 49.8
Hund05161 Selenicereus undatus HOM05D000901 ORTHO05D004766 7.9e-61 238.0 249 49.8
Thhalv10010046m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 2.3e-60 236.5 197 60.4
Nitab4.5_0001936g0050 Nicotiana tabacum HOM05D000901 ORTHO05D004766 3.0e-60 236.1 245 51.0
Lj1g0003310 Lotus japonicus HOM05D000901 ORTHO05D004766 8.8e-60 234.6 247 49.8
Eucgr.F03719 Eucalyptus grandis HOM05D000901 ORTHO05D004766 2.0e-59 233.4 241 49.4
TPR.G9568 Trifolium pratense HOM05D000901 ORTHO05D004766 2.0e-59 233.4 246 49.2
Ca_11598_v3 Cicer arietinum L. HOM05D000901 ORTHO05D004766 3.3e-59 232.6 228 50.9
Hund01706 Selenicereus undatus HOM05D000901 ORTHO05D004766 4.4e-59 232.3 222 52.3
Oeu048721.1 Olea europaea HOM05D000901 ORTHO05D004766 5.7e-59 231.9 232 51.7
Sc15g0004710 Simmondsia chinensis HOM05D000901 ORTHO05D004766 2.2e-58 229.9 249 49.4
Nitab4.5_0002730g0020 Nicotiana tabacum HOM05D000901 ORTHO05D004766 3.7e-58 229.2 239 49.8
Lalb_Chr11g0061781 Lupinus albus HOM05D000901 ORTHO05D004766 6.3e-58 228.4 243 48.1
Eucgr.F01691 Eucalyptus grandis HOM05D000901 ORTHO05D004766 8.2e-58 228.0 238 50.8
Hund05157 Selenicereus undatus HOM05D000901 ORTHO05D004766 1.1e-57 227.6 236 49.6
Hund05162 Selenicereus undatus HOM05D000901 ORTHO05D004766 1.1e-57 227.6 236 49.6
SGA_v2.0_scaffold145G36086 Striga asiatica HOM05D000901 ORTHO05D004766 1.1e-57 227.6 228 51.8
Potri.002G017500 Populus trichocarpa HOM05D000901 ORTHO05D004766 1.4e-57 227.3 245 48.6
HanXRQChr06g0184521 Helianthus annuus HOM05D000901 ORTHO05D004766 1.8e-57 226.9 245 48.2
Migut.C00891 Erythranthe guttata HOM05D000901 ORTHO05D004766 2.4e-57 226.5 226 51.8
Aqoxy5G01833 Aquilegia oxysepala HOM05D000901 ORTHO05D004766 3.1e-57 226.1 249 47.8
PGR031G2145 Punica granatum HOM05D000901 ORTHO05D004766 3.1e-57 226.1 255 48.6
AUR62013896 Chenopodium quinoa HOM05D000901 ORTHO05D004766 4.1e-57 225.7 234 48.7
PSO063G0231 Papaver somniferum HOM05D000901 ORTHO05D004766 5.3e-57 225.3 254 47.2
Ah.00g000720 Amaranthus hybridus HOM05D000901 ORTHO05D004766 1.2e-56 224.2 252 48.4
CSS0049889 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 2.0e-56 223.4 249 48.2
Gohir.A06G001500 Gossypium hirsutum HOM05D000901 ORTHO05D004766 2.0e-56 223.4 212 50.5
CSS0047191 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 2.6e-56 223.0 246 48.8
vmacro21856 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 3.4e-56 222.6 252 47.2
DCAR_013891 Daucus carota HOM05D000901 ORTHO05D004766 1.3e-55 220.7 242 48.8
Lj4A800T39 Lonicera japonica HOM05D000901 ORTHO05D004766 1.3e-55 220.7 239 48.5
PSO782G4846 Papaver somniferum HOM05D000901 ORTHO05D004766 2.2e-55 219.9 246 47.6
Peaxi162Scf00064g00828 Petunia axillaris HOM05D000901 ORTHO05D004766 2.2e-55 219.9 243 46.5
vmacro04376 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 2.2e-55 219.9 241 46.9
Nitab4.5_0000498g0060 Nicotiana tabacum HOM05D000901 ORTHO05D004766 6.5e-55 218.4 247 46.6
TAR381G0201 Trochodendron aralioides HOM05D000901 ORTHO05D004766 8.5e-55 218.0 242 47.5
Psat7g082200 Pisum sativum HOM05D000901 ORTHO05D004766 1.9e-54 216.9 246 46.3
Nn6g31933 Nelumbo nucifera HOM05D000901 ORTHO05D004766 3.2e-54 216.1 245 48.6
MBI05_g36763_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 4.2e-54 215.7 252 46.0
Peaxi162Scf00289g00084 Petunia axillaris HOM05D000901 ORTHO05D004766 7.2e-54 214.9 252 45.2
CSS0010771 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 9.4e-54 214.5 226 47.8
PGR083G1908 Punica granatum HOM05D000901 ORTHO05D004766 1.2e-53 214.2 242 47.5
ECA238G3494 Erigeron canadensis HOM05D000901 ORTHO05D004766 2.7e-53 213.0 235 48.1
HanXRQChr14g0429411 Helianthus annuus HOM05D000901 ORTHO05D004766 2.7e-53 213.0 241 46.9
Actinidia37946 Actinidia chinensis HOM05D000901 ORTHO05D004766 3.6e-53 212.6 241 46.1
Solyc12g094380.2 Solanum lycopersicum HOM05D000901 ORTHO05D004766 6.1e-53 211.8 243 46.1
Sopen12g031260 Solanum pennellii HOM05D000901 ORTHO05D004766 6.1e-53 211.8 244 45.9
Lsat_1_v5_gn_2_7381 Lactuca sativa HOM05D000901 ORTHO05D004766 1.4e-52 210.7 240 45.8
CAN.G1517.1 Capsicum annuum HOM05D000901 ORTHO05D004766 1.8e-52 210.3 218 48.6
Cc10_g01220 Coffea canephora HOM05D000901 ORTHO05D004766 3.0e-52 209.5 225 48.0
PGSC0003DMG400029329 Solanum tuberosum HOM05D000901 ORTHO05D004766 1.1e-51 207.6 243 44.4
SalBow7G4280 Salvia bowleyana HOM05D000901 ORTHO05D004766 2.6e-51 206.5 226 46.5
Sopen12g031250 Solanum pennellii HOM05D000901 ORTHO05D004766 4.4e-51 205.7 244 43.4
Lj4A18T108 Lonicera japonica HOM05D000901 ORTHO05D004766 5.7e-51 205.3 240 45.0
GSVIVG01008758001 Vitis vinifera HOM05D000901 ORTHO05D004766 3.7e-50 202.6 237 46.8
DCAR_025124 Daucus carota HOM05D000901 ORTHO05D004766 1.8e-49 200.3 244 43.9
MSTRG.1155 Avicennia marina HOM05D000901 ORTHO05D004766 1.6e-48 197.2 240 44.2
MSTRG.1154 Avicennia marina HOM05D000901 ORTHO05D004766 2.0e-48 196.8 240 44.2
DCAR_013892 Daucus carota HOM05D000901 ORTHO05D004766 2.0e-48 196.8 250 43.2
Nn5g30828 Nelumbo nucifera HOM05D000901 ORTHO05D004766 1.1e-46 191.0 244 43.0
FAN27G1122 Fragaria x ananassa HOM05D000901 ORTHO05D001160 1.5e-46 190.7 203 51.7
BcaB05g24967 Brassica carinata HOM05D000901 ORTHO05D001160 4.2e-46 189.1 110 82.7
Os04g0227500 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 2.1e-45 186.8 226 42.9
ATR0661G262 Amborella trichopoda HOM05D000901 ORTHO05D004766 5.2e-44 182.2 230 41.7
HPP92_025437 Vanilla planifolia HOM05D000901 ORTHO05D004766 6.7e-44 181.8 246 40.7
SEGI_34166 Sequoiadendron giganteum HOM05D000901 ORTHO05D004766 1.5e-43 180.6 239 41.4
HPP92_026881 Vanilla planifolia HOM05D000901 ORTHO05D004766 4.4e-43 179.1 224 41.5
CDE09G0289 Ceratophyllum demersum HOM05D000901 ORTHO05D004766 1.7e-42 177.2 244 41.8
HPP92_003483 Vanilla planifolia HOM05D000901 ORTHO05D004766 8.2e-42 174.9 224 40.6
HPP92_022203 Vanilla planifolia HOM05D000901 ORTHO05D004766 8.2e-42 174.9 224 40.2
BolC1t01801H Brassica oleracea HOM05D000901 ORTHO05D004766 1.1e-41 174.5 146 63.0
BolC6t40031H Brassica oleracea HOM05D000901 ORTHO05D004766 2.0e-40 170.2 140 63.6
SGA_v2.0_scaffold292G47381 Striga asiatica HOM05D000901 ORTHO05D004766 4.5e-40 169.1 201 43.8
Zm00001eb103900 Zea mays HOM05D000901 ORTHO05D004766 1.3e-39 167.5 227 40.5
Rhsim06G0013400 Rhododendron simsii HOM05D000901 ORTHO05D004766 5.0e-39 165.6 202 46.5
Os09g0542200 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 1.9e-38 163.7 230 39.1
BcaC09g50963 Brassica carinata HOM05D000901 ORTHO05D004766 6.8e-36 155.2 92 79.3
SMO137G0357 Selaginella moellendorffii HOM05D000901 ORTHO05D004766 4.4e-35 152.5 221 38.9
BcaC01g02788 Brassica carinata HOM05D000901 ORTHO05D004766 5.7e-35 152.1 110 70.0
C03p50790 Brassica napus HOM05D000901 ORTHO05D004766 1.7e-34 150.6 110 69.1
Rhsim07G0249300 Rhododendron simsii HOM05D000901 ORTHO05D004766 4.8e-34 149.1 239 41.0
Nitab4.5_0010135g0010 Nicotiana tabacum HOM05D000901 ORTHO05D004766 4.1e-33 146.0 251 36.7
Dinv31885 Davidia involucrata HOM05D000901 ORTHO05D001160 1.2e-32 144.4 129 54.3
Psat7g082240 Pisum sativum HOM05D000901 ORTHO05D004766 2.7e-32 143.3 126 54.8
Actinidia29763 Actinidia chinensis HOM05D000901 ORTHO05D004766 4.2e-30 136.0 244 35.2
C07p15020 Brassica napus HOM05D000901 ORTHO05D004766 4.2e-30 136.0 101 68.3
FAN15G2950 Fragaria x ananassa HOM05D000901 ORTHO05D001160 5.5e-30 135.6 203 41.9
Mapoly0103s0033 Marchantia polymorpha HOM05D000901 ORTHO05D004766 9.5e-30 134.8 246 33.7
MBI05_g08641_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 4.0e-28 129.4 126 50.0
Pp3c23_11410 Physcomitrium patens HOM05D000901 ORTHO05D004766 4.0e-28 129.4 245 31.0
MBI05_g19938_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 2.6e-27 126.7 144 45.8
Oeu048720.1 Olea europaea HOM05D000901 ORTHO05D004766 3.4e-27 126.3 132 50.0
unitig_32.g11240 Utricularia gibba HOM05D000901 ORTHO05D004766 3.1e-25 119.8 127 48.0
BolC6t37476H Brassica oleracea HOM05D000901 ORTHO05D004766 1.2e-24 117.9 89 66.3
Haze_22688 Corylus avellana HOM05D000901 ORTHO05D004766 1.6e-24 117.5 98 56.1
Lj2g0002110 Lotus japonicus HOM05D000901 ORTHO05D004766 5.9e-24 115.5 182 40.1
MBI05_g47803_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 8.6e-23 111.7 152 44.1
C03p60410 Brassica napus HOM05D000901 ORTHO05D004766 1.1e-22 111.3 86 66.3
Eucgr.L01283 Eucalyptus grandis HOM05D000901 ORTHO05D004766 2.5e-22 110.2 127 47.2
MSTRG.25272 Avicennia marina HOM05D000901 ORTHO05D004766 4.3e-22 109.4 143 42.0
Zm00001eb419520 Zea mays HOM05D000901 ORTHO05D004766 9.5e-22 108.2 163 35.6
BcaC09g50962 Brassica carinata HOM05D000901 ORTHO05D004766 3.4e-19 99.8 63 77.8
BolC3t18302H Brassica oleracea HOM05D000901 ORTHO05D004766 7.5e-19 98.6 77 66.2
AagrBONN_evm.TU.Sc2ySwM_228.1931 Anthoceros agrestis HOM05D000901 ORTHO05D004766 9.8e-19 98.2 202 31.2
AUR62036699 Chenopodium quinoa HOM05D000901 ORTHO05D004766 2.9e-18 96.7 107 45.8
Ciclev10027478m.g Citrus clementina HOM05D000901 ORTHO05D004766 3.7e-18 96.3 81 54.3
CiPaw.07G144400 Carya illinoinensis HOM05D000901 ORTHO05D004766 1.8e-17 94.0 88 45.5
CBR_g10910 Chara braunii HOM05D000901 ORTHO05D004766 1.3e-15 87.8 200 28.5
Rhsim07G0249200 Rhododendron simsii HOM05D000901 ORTHO05D004766 5.6e-14 82.4 69 55.1
Haze_22689 Corylus avellana HOM05D000901 ORTHO05D004766 3.1e-12 76.6 145 38.6
Eucgr.H01097 Eucalyptus grandis HOM05D000901 ORTHO05D004766 8.9e-12 75.1 65 56.9
C03p90670 Brassica napus HOM05D000138 ORTHO05D032089 2.1e-08 63.9 59 59.3
BolC3t21388H Brassica oleracea HOM05D000901 ORTHO05D032089 3.3e-06 56.6 43 67.4
BcaC07g42528 Brassica carinata HOM05D037012 ORTHO05D039422 5.6e-06 55.8 46 63.0


User provided reference genes

Program Settings