Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G35870 Arabidopsis lyrata HOM05D008819 ORTHO05D003197 2.6e-161 572.0 293 100.0
AT1G75860 Arabidopsis thaliana HOM05D008819 ORTHO05D003197 4.2e-119 431.8 299 77.6
Carub.0002s2277 Capsella rubella HOM05D008819 ORTHO05D003197 5.7e-100 368.2 312 67.6
Thhalv10019693m.g Eutrema salsugineum HOM05D008819 ORTHO05D003197 1.6e-78 297.0 279 64.9
CARHR069410 Cardamine hirsuta HOM05D008819 ORTHO05D003197 1.4e-74 283.9 272 64.0
Sp5g31000 Schrenkiella parvula HOM05D008819 ORTHO05D003197 1.2e-70 270.8 317 58.0
Aa31LG4G6060 Aethionema arabicum HOM05D008819 ORTHO05D003197 2.3e-69 266.5 305 56.1
BcaC08g47079 Brassica carinata HOM05D008819 ORTHO05D003197 5.6e-63 245.4 303 55.4
A07p41430 Brassica napus HOM05D008819 ORTHO05D003197 1.4e-58 230.7 307 50.2
BcaC08g47318 Brassica carinata HOM05D008819 ORTHO05D003197 3.0e-56 223.0 311 50.5
BolC6t40021H Brassica oleracea HOM05D008819 ORTHO05D003197 5.1e-56 222.2 311 50.8
C06p49830 Brassica napus HOM05D008819 ORTHO05D003197 1.3e-54 217.6 311 50.2
AT1G20100 Arabidopsis thaliana HOM05D008819 ORTHO05D003197 2.9e-51 206.5 302 47.4
A06p16240 Brassica napus HOM05D008819 ORTHO05D003197 3.8e-51 206.1 303 47.9
BcaNung03339 Brassica carinata HOM05D008819 ORTHO05D003197 4.9e-51 205.7 301 47.5
BcaC05g25908 Brassica carinata HOM05D008819 ORTHO05D003197 6.4e-51 205.3 300 47.7
C05p18590 Brassica napus HOM05D008819 ORTHO05D003197 6.4e-51 205.3 300 47.7
THA.LOC104809551 Tarenaya hassleriana HOM05D008819 ORTHO05D003197 6.4e-51 205.3 308 46.4
C07p23350 Brassica napus HOM05D008819 ORTHO05D003197 1.4e-50 204.1 301 47.2
Aa31LG7G4540 Aethionema arabicum HOM05D008819 ORTHO05D003197 1.9e-50 203.8 303 48.5
BraA06t24727Z Brassica rapa HOM05D008819 ORTHO05D003197 4.2e-50 202.6 305 47.2
BolC5t30570H Brassica oleracea HOM05D008819 ORTHO05D003197 1.6e-49 200.7 302 47.0
Carub.0001s1963 Capsella rubella HOM05D008819 ORTHO05D003197 2.7e-49 199.9 303 46.5
BcaB07g32025 Brassica carinata HOM05D008819 ORTHO05D003197 6.0e-49 198.7 305 46.2
Thhalv10008464m.g Eutrema salsugineum HOM05D008819 ORTHO05D003197 1.0e-48 198.0 300 48.0
BolC7t42868H Brassica oleracea HOM05D008819 ORTHO05D003197 3.9e-48 196.1 302 45.7
Sp1g17870 Schrenkiella parvula HOM05D008819 ORTHO05D003197 2.1e-38 163.7 303 41.3
THA.LOC104813782 Tarenaya hassleriana HOM05D008819 ORTHO05D003197 2.4e-37 160.2 304 43.1
BolC3t16044H Brassica oleracea HOM05D008819 ORTHO05D003197 1.0e-35 154.8 214 48.1
BcaB03g14340 Brassica carinata HOM05D008819 ORTHO05D003197 4.6e-33 146.0 304 41.4
BcaB03g14414 Brassica carinata HOM05D008819 ORTHO05D003197 1.8e-32 144.1 303 40.6
BcaC01g06727 Brassica carinata HOM05D008819 ORTHO05D003197 2.0e-28 130.6 216 41.7
CARHR020580 Cardamine hirsuta HOM05D008819 ORTHO05D003197 8.4e-27 125.2 179 46.9
THA.LOC104813240 Tarenaya hassleriana HOM05D008819 ORTHO05D003197 3.5e-25 119.8 280 38.6
C03p37510 Brassica napus HOM05D008819 ORTHO05D003197 2.3e-24 117.1 223 39.9
Ciclev10002009m.g Citrus clementina HOM05D004095 ORTHO05D003197 4.2e-18 96.3 311 31.8
Gohir.A05G185000 Gossypium hirsutum HOM05D004095 ORTHO05D003197 6.1e-17 92.4 300 30.7
Gorai.009G193100 Gossypium raimondii HOM05D004095 ORTHO05D003197 1.8e-16 90.9 300 31.0
PSO170G2543 Papaver somniferum HOM05D004095 ORTHO05D003197 1.8e-16 90.9 273 29.7
BcaC03g14371 Brassica carinata HOM05D008819 ORTHO05D003197 3.0e-16 90.1 215 38.1
Gohir.D05G187800 Gossypium hirsutum HOM05D004095 ORTHO05D003197 3.9e-16 89.7 300 31.0
PSO700G0117 Papaver somniferum HOM05D004095 ORTHO05D003197 1.1e-15 88.2 271 30.6
Duzib093G1456 Durio zibethinus HOM05D004095 ORTHO05D003197 4.3e-15 86.3 312 30.8
Cc10_g01420 Coffea canephora HOM05D004095 ORTHO05D003197 6.3e-14 82.4 333 30.0
CSS0006390 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 1.8e-13 80.9 243 31.3
Thecc.08G047900 Theobroma cacao HOM05D004095 ORTHO05D003197 2.4e-13 80.5 319 29.8
TWI36G1615 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 3.1e-13 80.1 233 30.9
CSS0032179 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 4.1e-13 79.7 242 31.4
COL.COLO4_26117 Corchorus olitorius HOM05D004095 ORTHO05D003197 4.1e-13 79.7 245 32.2
Sed0017695 Sechium edule HOM05D004095 ORTHO05D003197 1.5e-12 77.8 227 31.3
C02p17840 Brassica napus HOM05D008819 ORTHO05D003197 2.0e-12 77.4 128 46.9
Prupe.1G362800 Prunus persica HOM05D004095 ORTHO05D003197 2.0e-12 77.4 236 28.4
CAN.G311.49 Capsicum annuum HOM05D004095 ORTHO05D003197 2.6e-12 77.0 318 28.9
Potri.002G019200 Populus trichocarpa HOM05D004095 ORTHO05D003197 2.6e-12 77.0 313 29.7
PGR031G2559 Punica granatum HOM05D004095 ORTHO05D003197 2.6e-12 77.0 263 31.6
A08p16950 Brassica napus HOM05D008819 ORTHO05D003197 1.0e-11 75.1 124 46.8
CiPaw.07G146700 Carya illinoinensis HOM05D004095 ORTHO05D003197 1.0e-11 75.1 229 30.6
Haze_22667 Corylus avellana HOM05D004095 ORTHO05D003197 1.0e-11 75.1 219 28.8
Gorai.002G122400 Gossypium raimondii HOM05D004095 ORTHO05D003197 1.3e-11 74.7 227 34.4
Gohir.A01G110100 Gossypium hirsutum HOM05D004095 ORTHO05D003197 2.2e-11 73.9 279 30.5
Lj4A21T58 Lonicera japonica HOM05D004095 ORTHO05D003197 2.2e-11 73.9 265 29.1
Prupe.1G362500 Prunus persica HOM05D004095 ORTHO05D003197 2.2e-11 73.9 327 27.8
PGSC0003DMG400009946 Solanum tuberosum HOM05D004095 ORTHO05D003197 2.9e-11 73.6 320 28.4
SGA_v2.0_scaffold11G05941 Striga asiatica HOM05D004095 ORTHO05D003197 2.9e-11 73.6 313 28.1
arahy.Tifrunner.gnm1.ann1.I59WU7 Arachis hypogaea HOM05D004095 ORTHO05D003197 6.5e-11 72.4 321 27.7
ClCG08G014140 Citrullus lanatus HOM05D004095 ORTHO05D003197 6.5e-11 72.4 241 30.3
AL2G36300 Arabidopsis lyrata HOM05D014797 ORTHO05D016596 1.1e-10 71.6 100 44.0
Manes.18G010907 Manihot esculenta HOM05D004095 ORTHO05D003197 1.1e-10 71.6 312 26.9
Sabra02G0015500 Salix brachista HOM05D004095 ORTHO05D003197 1.1e-10 71.6 236 30.9
arahy.Tifrunner.gnm1.ann1.VNIF6J Arachis hypogaea HOM05D004095 ORTHO05D003197 1.4e-10 71.2 325 28.6
Oeu007365.1 Olea europaea HOM05D004095 ORTHO05D003197 1.4e-10 71.2 244 29.1
TWI12G1115 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 1.4e-10 71.2 233 29.2
Hund01666 Selenicereus undatus HOM05D004095 ORTHO05D003197 1.9e-10 70.9 259 27.8
Duzib041G0318 Durio zibethinus HOM05D004095 ORTHO05D003197 4.2e-10 69.7 239 31.0
Gohir.D01G096700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 5.5e-10 69.3 278 31.7
Sabra05G0187500 Salix brachista HOM05D004095 ORTHO05D003197 5.5e-10 69.3 253 31.6
Solyc04g081730.3 Solanum lycopersicum HOM05D004095 ORTHO05D003197 5.5e-10 69.3 320 28.4
Sopen04g035350 Solanum pennellii HOM05D004095 ORTHO05D003197 2.7e-09 67.0 318 27.7
Lj5g0025072 Lotus japonicus HOM05D004095 ORTHO05D003197 7.9e-09 65.5 243 28.0
Eucgr.I02328 Eucalyptus grandis HOM05D004095 ORTHO05D003197 1.4e-08 64.7 329 27.1
Gohir.D03G007700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.4e-08 64.7 245 30.6
CsaV3_2G024280 Cucumis sativus L. HOM05D004095 ORTHO05D003197 3.0e-08 63.5 243 29.2
MSTRG.25264 Avicennia marina HOM05D004095 ORTHO05D003197 3.9e-08 63.2 268 26.9
Nn6g31993 Nelumbo nucifera HOM05D004095 ORTHO05D003197 3.9e-08 63.2 252 31.0
SalBow7G2790 Salvia bowleyana HOM05D004095 ORTHO05D003197 5.1e-08 62.8 262 28.6
Hma1.2p1_0023F.1_g015650 Hydrangea macrophylla HOM05D004095 ORTHO05D003197 8.8e-08 62.0 243 27.6
unitig_0.g2088 Utricularia gibba HOM05D004095 ORTHO05D003197 8.8e-08 62.0 94 35.1
Cfa013982 Carpinus fangiana HOM05D004095 ORTHO05D003197 1.1e-07 61.6 306 27.5
Gorai.003G007900 Gossypium raimondii HOM05D004095 ORTHO05D003197 1.1e-07 61.6 250 31.2
Aqoxy5G01820 Aquilegia oxysepala HOM05D004095 ORTHO05D003197 1.5e-07 61.2 250 30.0
Dinv31870 Davidia involucrata HOM05D004095 ORTHO05D003197 1.5e-07 61.2 347 25.6
Aqoxy6G02168 Aquilegia oxysepala HOM05D004095 ORTHO05D003197 3.3e-07 60.1 315 27.6
FAN27G1813 Fragaria x ananassa HOM05D004095 ORTHO05D003197 4.4e-07 59.7 310 28.1
Gohir.A02G172400 Gossypium hirsutum HOM05D004095 ORTHO05D003197 4.4e-07 59.7 246 30.9
Sed0007913 Sechium edule HOM05D004095 ORTHO05D003197 5.7e-07 59.3 304 27.3
Migut.C00862 Erythranthe guttata HOM05D004095 ORTHO05D003197 7.4e-07 58.9 278 26.6
TAR381G0731 Trochodendron aralioides HOM05D004095 ORTHO05D003197 7.4e-07 58.9 222 30.2
CiPaw.08G067700 Carya illinoinensis HOM05D004095 ORTHO05D003197 1.3e-06 58.2 232 25.9
MELO3C011353.2 Cucumis melo HOM05D004095 ORTHO05D003197 1.3e-06 58.2 346 27.2
Duzib264G0091 Durio zibethinus HOM05D004095 ORTHO05D003197 1.3e-06 58.2 250 28.4
Nitab4.5_0006505g0050 Nicotiana tabacum HOM05D004095 ORTHO05D003197 1.7e-06 57.8 229 30.1
Lalb_Chr08g0246191 Lupinus albus HOM05D004095 ORTHO05D003197 2.2e-06 57.4 238 27.3
CARHR069790 Cardamine hirsuta HOM05D014797 ORTHO05D016596 2.8e-06 57.0 164 32.3
Oeu061977.1 Olea europaea HOM05D004095 ORTHO05D003197 2.8e-06 57.0 247 26.7
Potri.005G242400 Populus trichocarpa HOM05D004095 ORTHO05D003197 4.8e-06 56.2 251 28.7
EL10Ac3g06641 Beta vulgaris HOM05D004095 ORTHO05D003197 6.3e-06 55.8 274 28.5
Glyma.14G220400 Glycine max HOM05D013708 ORTHO05D003197 8.2e-06 55.5 55 45.5


User provided reference genes

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