Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G35180 Arabidopsis lyrata HOM05D006278 ORTHO05D007526 2.4e-228 795.4 481 100.0
AT1G75260 Arabidopsis thaliana HOM05D006278 ORTHO05D007526 2.1e-171 606.3 473 83.9
CARHR068590 Cardamine hirsuta HOM05D006278 ORTHO05D007526 1.0e-133 481.1 475 72.2
Carub.0002s2208 Capsella rubella HOM05D006278 ORTHO05D007526 2.3e-114 416.8 479 64.3
Sp5g30420 Schrenkiella parvula HOM05D006278 ORTHO05D007526 3.7e-96 356.3 284 69.4
C06p49230 Brassica napus HOM05D006278 ORTHO05D007526 1.9e-92 344.0 513 56.3
BolC6t39956H Brassica oleracea HOM05D006278 ORTHO05D007526 7.2e-92 342.0 589 50.8
BraA07t31626Z Brassica rapa HOM05D006278 ORTHO05D007526 9.4e-92 341.7 511 56.6
Thhalv10018443m.g Eutrema salsugineum HOM05D006278 ORTHO05D007526 9.4e-92 341.7 488 55.7
BcaC08g47365 Brassica carinata HOM05D006278 ORTHO05D007526 1.2e-91 341.3 589 50.8
BcaNung04385 Brassica carinata HOM05D006278 ORTHO05D007526 5.2e-90 335.9 551 52.8
A07p40840 Brassica napus HOM05D006278 ORTHO05D007526 1.8e-87 327.4 511 54.4
Aa31LG4G5490 Aethionema arabicum HOM05D006278 ORTHO05D007526 9.8e-81 305.1 502 52.8
THA.LOC104809215 Tarenaya hassleriana HOM05D006278 ORTHO05D007526 7.1e-55 219.2 267 53.2
COL.COLO4_26292 Corchorus olitorius HOM05D006278 ORTHO05D007526 7.6e-41 172.6 247 42.9
Thecc.08G029100 Theobroma cacao HOM05D006278 ORTHO05D007526 2.9e-40 170.6 206 49.0
Duzib041G0028 Durio zibethinus HOM05D006278 ORTHO05D007526 4.9e-40 169.9 283 42.0
Eucgr.F01578 Eucalyptus grandis HOM05D006278 ORTHO05D007526 1.9e-39 167.9 285 38.2
Manes.05G158000 Manihot esculenta HOM05D006278 ORTHO05D007526 9.3e-39 165.6 257 42.8
Potri.002G034700 Populus trichocarpa HOM05D006278 ORTHO05D007526 4.6e-38 163.3 221 48.9
TWI12G1431 Tripterygium wilfordii HOM05D006278 ORTHO05D007526 2.3e-37 161.0 294 38.8
Peaxi162Scf00303g00043 Petunia axillaris HOM05D006278 ORTHO05D007526 5.1e-37 159.8 298 38.3
DCAR_017552 Daucus carota HOM05D006278 ORTHO05D007526 1.5e-36 158.3 237 45.1
Dinv36098 Davidia involucrata HOM05D006278 ORTHO05D007526 1.9e-36 157.9 233 44.6
Gohir.D06G004900 Gossypium hirsutum HOM05D006278 ORTHO05D007526 3.3e-36 157.1 279 39.8
Gorai.010G009500 Gossypium raimondii HOM05D006278 ORTHO05D007526 3.3e-36 157.1 279 39.8
Nitab4.5_0000017g0170 Nicotiana tabacum HOM05D006278 ORTHO05D007526 2.1e-35 154.5 278 39.6
PSO675G3973 Papaver somniferum HOM05D006278 ORTHO05D007526 1.1e-34 152.1 257 39.7
CSS0025999 Camellia sinensis var. sinensis HOM05D006278 ORTHO05D007526 1.8e-34 151.4 184 48.4
Gohir.A06G009400 Gossypium hirsutum HOM05D006278 ORTHO05D007526 5.3e-34 149.8 279 38.7
QL12p039628 Quercus lobata HOM05D006278 ORTHO05D007526 9.0e-34 149.1 245 42.0
Duzib093G1165 Durio zibethinus HOM05D006278 ORTHO05D007526 2.0e-33 147.9 271 40.6
CANSAT35G1968 Cannabis sativa HOM05D006278 ORTHO05D007526 3.4e-33 147.1 290 37.2
Lj4P787T11 Lonicera japonica HOM05D006278 ORTHO05D007526 3.4e-33 147.1 210 45.7
Sabra02G0027900 Salix brachista HOM05D006278 ORTHO05D007526 5.8e-33 146.4 214 44.9
Rhsim06G0031900 Rhododendron simsii HOM05D006278 ORTHO05D007526 9.9e-33 145.6 255 38.4
Oeu049934.1 Olea europaea HOM05D006278 ORTHO05D007526 1.7e-32 144.8 264 38.6
Aqoxy6G01136 Aquilegia oxysepala HOM05D006278 ORTHO05D007526 2.2e-32 144.4 207 45.9
Cpa.g.sc3.303 Carica papaya HOM05D006278 ORTHO05D007526 2.2e-32 144.4 204 46.6
Atru.chr13.448 Acer truncatum HOM05D006278 ORTHO05D007526 4.9e-32 143.3 276 35.5
CiPaw.04G062900 Carya illinoinensis HOM05D006278 ORTHO05D007526 6.4e-32 142.9 210 41.9
PGR004G0534 Punica granatum HOM05D006278 ORTHO05D007526 8.4e-32 142.5 257 40.1
Prupe.1G377800 Prunus persica HOM05D006278 ORTHO05D007526 1.9e-31 141.4 266 38.7
SGA_v2.0_scaffold201G41409 Striga asiatica HOM05D006278 ORTHO05D007526 1.9e-31 141.4 242 39.3
PSO541G0933 Papaver somniferum HOM05D006278 ORTHO05D007526 4.2e-31 140.2 262 38.2
Nitab4.5_0004768g0010 Nicotiana tabacum HOM05D006278 ORTHO05D007526 7.1e-31 139.4 274 38.3
Sc02g0005980 Simmondsia chinensis HOM05D006278 ORTHO05D007526 9.3e-31 139.0 254 38.6
Ciclev10000483m.g Citrus clementina HOM05D006278 ORTHO05D007526 1.6e-30 138.3 283 38.9
Haze_13828 Corylus avellana HOM05D006278 ORTHO05D007526 1.0e-29 135.6 285 38.2
Migut.O00967 Erythranthe guttata HOM05D006278 ORTHO05D007526 2.3e-29 134.4 173 43.9
MSTRG.1269 Avicennia marina HOM05D006278 ORTHO05D007526 3.9e-29 133.7 208 40.9
Cfa008229 Carpinus fangiana HOM05D006278 ORTHO05D007526 3.9e-29 133.7 287 36.2
CAN.G424.60 Capsicum annuum HOM05D006278 ORTHO05D007526 5.1e-29 133.3 292 35.6
MBI10_g18263_MAGBIO Magnolia biondii HOM05D006278 ORTHO05D007526 6.6e-29 132.9 258 36.8
Lj5g0016594 Lotus japonicus HOM05D006278 ORTHO05D007526 8.7e-29 132.5 281 35.9
TAR101G0003 Trochodendron aralioides HOM05D006278 ORTHO05D007526 2.5e-28 131.0 251 37.1
PGSC0003DMG400005375 Solanum tuberosum HOM05D006278 ORTHO05D007526 7.4e-28 129.4 213 40.4
Nitab4.5_0002224g0110 Nicotiana tabacum HOM05D006278 ORTHO05D007526 1.3e-27 128.6 242 36.4
Nn2g14857 Nelumbo nucifera HOM05D006278 ORTHO05D007526 3.6e-27 127.1 177 44.1
RcHm_v2.0_Chr6g0301251 Rosa chinensis HOM05D006278 ORTHO05D007526 6.2e-27 126.3 183 42.1
FvH4_2g39641 Fragaria vesca HOM05D006278 ORTHO05D007526 4.0e-26 123.6 256 34.8
FAN20G2275 Fragaria x ananassa HOM05D006278 ORTHO05D007526 6.9e-26 122.9 249 36.5
ClCG08G014920 Citrullus lanatus HOM05D006278 ORTHO05D007526 2.0e-25 121.3 244 38.5
MD08G1030100 Malus domestica HOM05D006278 ORTHO05D007526 5.8e-25 119.8 242 37.6
Lalb_Chr24g0398921 Lupinus albus HOM05D006278 ORTHO05D007526 7.6e-25 119.4 300 33.0
Sed0000803 Sechium edule HOM05D006278 ORTHO05D007526 7.6e-25 119.4 249 36.1
Ah.05g169430 Amaranthus hybridus HOM05D006278 ORTHO05D007526 2.9e-24 117.5 183 43.7
ECA247G1288 Erigeron canadensis HOM05D006278 ORTHO05D007526 2.9e-24 117.5 237 34.2
Peaxi162Scf00020g00184 Petunia axillaris HOM05D006278 ORTHO05D007526 8.4e-24 115.9 207 38.6
CAN.G1226.35 Capsicum annuum HOM05D006278 ORTHO05D007526 1.4e-23 115.2 285 33.7
Glyma.14G073601 Glycine max HOM05D006278 ORTHO05D007526 1.9e-23 114.8 226 37.2
Medtr3g111950 Medicago truncatula HOM05D006278 ORTHO05D007526 1.9e-23 114.8 171 43.9
HPP92_004792 Vanilla planifolia HOM05D006278 ORTHO05D007526 1.9e-23 114.8 196 38.8
unitig_0.g2047 Utricularia gibba HOM05D006278 ORTHO05D007526 2.4e-23 114.4 185 42.2
CsaV3_2G028850 Cucumis sativus L. HOM05D006278 ORTHO05D007526 4.2e-23 113.6 254 32.7
PGSC0003DMG400003686 Solanum tuberosum HOM05D006278 ORTHO05D007526 4.2e-23 113.6 276 32.2
Sopen04g034110 Solanum pennellii HOM05D006278 ORTHO05D007526 7.1e-23 112.8 276 34.1
AUR62033855 Chenopodium quinoa HOM05D006278 ORTHO05D007526 9.3e-23 112.5 262 35.1
AUR62041670 Chenopodium quinoa HOM05D006278 ORTHO05D007526 1.2e-22 112.1 208 38.0
Solyc04g080520.1 Solanum lycopersicum HOM05D006278 ORTHO05D007526 1.2e-22 112.1 288 32.6
TPR.G12310 Trifolium pratense HOM05D006278 ORTHO05D007526 1.6e-22 111.7 241 34.9
Dinv39433 Davidia involucrata HOM05D006278 ORTHO05D007526 4.6e-22 110.2 166 42.2
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 4.6e-22 110.2 214 38.3
ATR0568G158 Amborella trichopoda HOM05D006278 ORTHO05D007526 1.3e-21 108.6 233 39.1
arahy.Tifrunner.gnm1.ann1.7TI70S Arachis hypogaea HOM05D006278 ORTHO05D007526 1.3e-21 108.6 216 37.5
CDE06G2487 Ceratophyllum demersum HOM05D006278 ORTHO05D007526 1.3e-21 108.6 202 37.6
Glyma.17G251400 Glycine max HOM05D006278 ORTHO05D007526 1.1e-20 105.5 257 33.1
TAR381G0716 Trochodendron aralioides HOM05D006278 ORTHO05D007526 2.5e-20 104.4 254 35.4
arahy.Tifrunner.gnm1.ann1.K7D9EI Arachis hypogaea HOM05D006278 ORTHO05D007526 3.3e-20 104.0 216 37.0
Lj1g0002957 Lotus japonicus HOM05D006278 ORTHO05D007526 3.3e-20 104.0 185 36.8
TAR245G0008 Trochodendron aralioides HOM05D006278 ORTHO05D007526 4.3e-20 103.6 254 35.4
Oeu029831.2 Olea europaea HOM05D006278 ORTHO05D007526 5.6e-20 103.2 196 35.7
Glyma.06G031201 Glycine max HOM05D006278 ORTHO05D007526 1.6e-19 101.7 208 39.4
Glyma.04G031100 Glycine max HOM05D006278 ORTHO05D007526 8.1e-19 99.4 191 38.2
Ca_15506_v3 Cicer arietinum L. HOM05D006278 ORTHO05D007526 1.8e-18 98.2 171 40.4
Psat5g012120 Pisum sativum HOM05D006278 ORTHO05D007526 1.8e-18 98.2 221 33.5
Ca_13364_v3 Cicer arietinum L. HOM05D006278 ORTHO05D007526 3.1e-18 97.4 257 32.7
Phvul.001G013600 Phaseolus vulgaris HOM05D006278 ORTHO05D007526 3.1e-18 97.4 257 33.1
Medtr1g022365 Medicago truncatula HOM05D006278 ORTHO05D007526 4.0e-18 97.1 274 30.3
CiPaw.03G096900 Carya illinoinensis HOM05D006278 ORTHO05D007526 1.2e-17 95.5 223 35.0
VMungo1309G1357 Vigna mungo HOM05D006278 ORTHO05D007526 7.6e-17 92.8 266 32.0
Psat6g008120 Pisum sativum HOM05D006278 ORTHO05D007526 1.3e-16 92.0 207 33.8
TPR.G20186 Trifolium pratense HOM05D006278 ORTHO05D007526 1.3e-16 92.0 244 31.6
TAR376G1184 Trochodendron aralioides HOM05D006278 ORTHO05D007526 6.5e-16 89.7 188 36.2
VMungo0647G1119 Vigna mungo HOM05D006278 ORTHO05D007526 1.4e-15 88.6 259 32.0
Phvul.009G058700 Phaseolus vulgaris HOM05D006278 ORTHO05D007526 3.2e-15 87.4 266 30.1
Potri.005G228400 Populus trichocarpa HOM05D006278 ORTHO05D007526 3.2e-15 87.4 251 33.1
Sabra05G0176300 Salix brachista HOM05D006278 ORTHO05D007526 1.6e-14 85.1 224 32.6
CANSAT25G3418 Cannabis sativa HOM05D006278 ORTHO05D007526 2.1e-14 84.7 178 38.8
TAR376G0700 Trochodendron aralioides HOM05D006278 ORTHO05D007526 6.0e-14 83.2 195 35.4
Actinidia15341 Actinidia chinensis HOM05D006278 ORTHO05D007526 3.0e-13 80.9 140 43.6
MD15G1025500 Malus domestica HOM05D006278 ORTHO05D007526 6.7e-13 79.7 179 35.2
FAN27G0814 Fragaria x ananassa HOM05D006278 ORTHO05D007526 1.1e-12 79.0 223 31.8
CDE04G1483 Ceratophyllum demersum HOM05D003484 ORTHO05D004152 1.9e-12 78.2 248 30.6
Nn5g29644 Nelumbo nucifera HOM05D006278 ORTHO05D007526 3.3e-12 77.4 135 36.3
Lalb_Chr08g0245891 Lupinus albus HOM05D006278 ORTHO05D007526 7.4e-12 76.3 113 44.2
FAN15G2069 Fragaria x ananassa HOM05D006278 ORTHO05D007526 1.6e-11 75.1 246 29.3
Gohir.D02G095000 Gossypium hirsutum HOM05D000342 ORTHO05D000217 4.1e-10 70.5 204 30.4
Gohir.A03G079100 Gossypium hirsutum HOM05D000342 ORTHO05D000217 1.2e-09 68.9 193 32.6
Gorai.005G108300 Gossypium raimondii HOM05D000342 ORTHO05D000217 1.5e-09 68.6 204 30.4
Nitab4.5_0003711g0040 Nicotiana tabacum HOM05D006278 ORTHO05D007526 6.5e-08 63.2 103 38.8
PGR031G2923 Punica granatum HOM05D004242 ORTHO05D004349 4.2e-07 60.5 125 36.8
Hma1.2p1_0180F.1_g079790 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 5.5e-07 60.1 123 33.3
CiPaw.02G043200 Carya illinoinensis HOM05D004242 ORTHO05D004349 1.6e-06 58.5 170 28.8
ClCG06G002780 Citrullus lanatus HOM05D004242 ORTHO05D004349 3.5e-06 57.4 94 34.0
PSO210G2709 Papaver somniferum HOM05D004242 ORTHO05D004349 3.5e-06 57.4 102 34.3
QL08p046281 Quercus lobata HOM05D004242 ORTHO05D004349 3.5e-06 57.4 121 32.2
SEGI_20460 Sequoiadendron giganteum HOM05D004242 ORTHO05D004349 4.6e-06 57.0 146 31.5


User provided reference genes

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