Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G34100 Arabidopsis lyrata HOM05D006637 ORTHO05D001736 1.8e-158 562.8 325 100.0
Sp5g29400 Schrenkiella parvula HOM05D006637 ORTHO05D001736 2.5e-128 462.6 331 81.9
Carub.0002s2101 Capsella rubella HOM05D006637 ORTHO05D001736 4.4e-125 451.8 328 82.9
AT1G74220 Arabidopsis thaliana HOM05D006637 ORTHO05D001736 4.5e-122 441.8 326 79.8
CARHR067480 Cardamine hirsuta HOM05D006637 ORTHO05D001736 7.7e-122 441.0 323 80.2
Thhalv10018880m.g Eutrema salsugineum HOM05D006637 ORTHO05D001736 2.7e-106 389.4 328 76.5
BcaC08g45599 Brassica carinata HOM05D006637 ORTHO05D001736 1.5e-96 357.1 327 68.5
BolC6t38463H Brassica oleracea HOM05D006637 ORTHO05D001736 4.0e-94 349.0 327 67.6
A02p19190 Brassica napus HOM05D006637 ORTHO05D001736 1.4e-91 340.5 331 65.3
BraA07t30588Z Brassica rapa HOM05D006637 ORTHO05D001736 1.9e-91 340.1 328 67.7
BcaC03g15494 Brassica carinata HOM05D006637 ORTHO05D001736 2.0e-90 336.7 331 64.7
BcaB05g24843 Brassica carinata HOM05D006637 ORTHO05D001736 7.8e-90 334.7 328 64.6
BraA02t06967Z Brassica rapa HOM05D006637 ORTHO05D001736 2.3e-86 323.2 327 61.8
C02p31780 Brassica napus HOM05D006637 ORTHO05D001736 3.4e-85 319.3 331 62.5
BolC2t09205H Brassica oleracea HOM05D006637 ORTHO05D001736 7.5e-85 318.2 334 62.0
BraA07t31550Z Brassica rapa HOM05D006637 ORTHO05D001736 6.0e-82 308.5 332 59.0
A07p40060 Brassica napus HOM05D006637 ORTHO05D001736 2.5e-80 303.1 329 60.2
C06p48410 Brassica napus HOM05D006637 ORTHO05D001736 1.2e-77 294.3 337 58.8
C06p33490 Brassica napus HOM05D000311 ORTHO05D000183 1.5e-77 293.9 276 69.2
A07p29500 Brassica napus HOM05D000311 ORTHO05D000183 5.8e-77 292.0 277 69.7
BcaC08g46854 Brassica carinata HOM05D006637 ORTHO05D001736 5.6e-72 275.4 249 69.9
Aa31LG4G4510 Aethionema arabicum HOM05D006637 ORTHO05D001736 2.4e-70 270.0 267 62.2
BcaC03g15490 Brassica carinata HOM05D006637 ORTHO05D001736 5.4e-67 258.8 312 58.7
BolC6t39870H Brassica oleracea HOM05D006637 ORTHO05D001736 1.5e-64 250.8 336 54.2
THA.LOC104808038 Tarenaya hassleriana HOM05D006637 ORTHO05D001736 1.2e-45 188.0 308 44.5
BcaB05g24564 Brassica carinata HOM05D006637 ORTHO05D001736 1.6e-26 124.4 175 53.7
MD14G1212300 Malus domestica HOM05D006637 ORTHO05D001736 2.7e-18 97.1 285 32.6
Manes.06G084300 Manihot esculenta HOM05D006637 ORTHO05D001736 7.9e-18 95.5 307 32.9
Ciclev10023416m.g Citrus clementina HOM05D006637 ORTHO05D001736 3.0e-17 93.6 312 32.1
Atru.chr9.567 Acer truncatum HOM05D006637 ORTHO05D001736 8.8e-17 92.0 302 32.5
Cpa.g.sc10.158 Carica papaya HOM05D006637 ORTHO05D001736 8.8e-17 92.0 355 32.4
Prupe.5G205600 Prunus persica HOM05D006637 ORTHO05D001736 2.0e-16 90.9 313 33.9
Duzib205G1030 Durio zibethinus HOM05D006637 ORTHO05D001736 7.4e-16 89.0 287 34.8
Thecc.03G102400 Theobroma cacao HOM05D006637 ORTHO05D001736 4.8e-15 86.3 245 36.3
MD06G1225400 Malus domestica HOM05D006637 ORTHO05D001736 8.2e-15 85.5 287 33.1
TPR.G2044 Trifolium pratense HOM05D006637 ORTHO05D001736 1.8e-14 84.3 304 33.6
Ca_21771_v3 Cicer arietinum L. HOM05D006637 ORTHO05D001736 5.3e-14 82.8 289 31.1
Sed0008450 Sechium edule HOM05D006637 ORTHO05D001736 5.3e-14 82.8 325 33.5
Lalb_Chr13g0302841 Lupinus albus HOM05D006637 ORTHO05D001736 1.6e-13 81.3 342 31.3
Duzib068G0311 Durio zibethinus HOM05D006637 ORTHO05D001736 2.6e-13 80.5 332 31.3
PGR083G0945 Punica granatum HOM05D006637 ORTHO05D001736 2.6e-13 80.5 333 30.9
Potri.015G057200 Populus trichocarpa HOM05D006637 ORTHO05D001736 3.5e-13 80.1 275 32.7
MELO3C017227.2 Cucumis melo HOM05D006637 ORTHO05D001736 2.9e-12 77.0 273 34.4
GSVIVG01012223001 Vitis vinifera HOM05D003787 ORTHO05D001736 2.9e-12 77.0 86 54.7
Nn3g17457 Nelumbo nucifera HOM05D003787 ORTHO05D001736 3.8e-12 76.6 290 30.3
CsaV3_1G002960 Cucumis sativus L. HOM05D006637 ORTHO05D001736 5.0e-12 76.3 272 34.6
Potri.012G061700 Populus trichocarpa HOM05D006637 ORTHO05D001736 5.0e-12 76.3 319 31.3
Nn4g23435 Nelumbo nucifera HOM05D006637 ORTHO05D001736 1.5e-11 74.7 335 31.6
CiPaw.11G054000 Carya illinoinensis HOM05D006637 ORTHO05D001736 1.9e-11 74.3 321 31.5
TWI81G0402 Tripterygium wilfordii HOM05D006637 ORTHO05D001736 1.9e-11 74.3 325 29.2
TAR371G0370 Trochodendron aralioides HOM05D006637 ORTHO05D001736 1.9e-11 74.3 282 31.2
Aqoxy3G03685 Aquilegia oxysepala HOM05D006637 ORTHO05D001736 2.5e-11 73.9 283 33.6
Cfa019342 Carpinus fangiana HOM05D000824 ORTHO05D003555 2.5e-11 73.9 262 35.1
DCAR_011559 Daucus carota HOM05D006637 ORTHO05D001736 2.5e-11 73.9 82 51.2
Gohir.A12G182900 Gossypium hirsutum HOM05D006637 ORTHO05D001736 2.5e-11 73.9 244 34.8
Manes.14G086000 Manihot esculenta HOM05D006637 ORTHO05D001736 2.5e-11 73.9 341 30.8
Cc00_g04710 Coffea canephora HOM05D006637 ORTHO05D001736 1.2e-10 71.6 131 42.7
PSO017G7320 Papaver somniferum HOM05D006637 ORTHO05D001736 1.2e-10 71.6 243 35.0
RcHm_v2.0_Chr7g0183151 Rosa chinensis HOM05D006637 ORTHO05D001736 1.6e-10 71.2 287 32.8
Sabra12G0044700 Salix brachista HOM05D006637 ORTHO05D001736 1.6e-10 71.2 258 32.6
Psat4g068920 Pisum sativum HOM05D006637 ORTHO05D001736 2.1e-10 70.9 329 33.1
Gorai.008G199400 Gossypium raimondii HOM05D006637 ORTHO05D001736 2.7e-10 70.5 238 34.0
Thhalv10005553m.g Eutrema salsugineum HOM05D003787 ORTHO05D001736 3.6e-10 70.1 116 43.1
Gohir.A03G070200 Gossypium hirsutum HOM05D006637 ORTHO05D001736 3.6e-10 70.1 170 38.2
Gohir.D12G186000 Gossypium hirsutum HOM05D006637 ORTHO05D001736 3.6e-10 70.1 238 34.0
ClCG06G015610 Citrullus lanatus HOM05D006637 ORTHO05D001736 4.7e-10 69.7 264 33.0
ATR0177G031 Amborella trichopoda HOM05D003787 ORTHO05D001736 6.1e-10 69.3 222 32.9
AT2G03630 Arabidopsis thaliana HOM05D003787 ORTHO05D001736 6.1e-10 69.3 275 30.5
Phvul.003G184500 Phaseolus vulgaris HOM05D006637 ORTHO05D001736 6.1e-10 69.3 312 30.4
TWI15G0882 Tripterygium wilfordii HOM05D006637 ORTHO05D001736 6.1e-10 69.3 365 30.1
Actinidia04823 Actinidia chinensis HOM05D006637 ORTHO05D001736 8.0e-10 68.9 143 40.6
Gohir.D03G096675 Gossypium hirsutum HOM05D006637 ORTHO05D001736 8.0e-10 68.9 170 37.6
PSO478G0913 Papaver somniferum HOM05D006637 ORTHO05D001736 8.0e-10 68.9 243 34.6
Lj4g0016086 Lotus japonicus HOM05D006637 ORTHO05D001736 1.0e-09 68.6 265 32.1
MBI19_g14007_MAGBIO Magnolia biondii HOM05D006637 ORTHO05D001736 1.0e-09 68.6 270 29.6
Gorai.007G039500 Gossypium raimondii HOM05D006637 ORTHO05D001736 1.4e-09 68.2 251 31.1
Gohir.D11G036700 Gossypium hirsutum HOM05D006637 ORTHO05D001736 1.8e-09 67.8 250 31.6
QL10p019649 Quercus lobata HOM05D006637 ORTHO05D001736 1.8e-09 67.8 225 35.6
FAN08G0389 Fragaria x ananassa HOM05D006637 ORTHO05D001736 2.3e-09 67.4 325 30.2
MD16G1060800 Malus domestica HOM05D003787 ORTHO05D001736 2.3e-09 67.4 193 32.6
Carub.0005s0277 Capsella rubella HOM05D003787 ORTHO05D001736 3.0e-09 67.0 295 28.8
Glyma.04G162200 Glycine max HOM05D006637 ORTHO05D001736 3.0e-09 67.0 281 31.0
AUR62008536 Chenopodium quinoa HOM05D006637 ORTHO05D001736 5.2e-09 66.2 153 37.9
Glyma.06G204000 Glycine max HOM05D006637 ORTHO05D001736 5.2e-09 66.2 204 35.8
Thecc.02G330000 Theobroma cacao HOM05D003787 ORTHO05D001736 5.2e-09 66.2 95 47.4
Sed0021860 Sechium edule HOM05D006637 ORTHO05D001736 8.8e-09 65.5 334 30.5
Potri.008G096300 Populus trichocarpa HOM05D003787 ORTHO05D001736 1.2e-08 65.1 103 42.7
CAN.G1228.21 Capsicum annuum HOM05D006637 ORTHO05D001736 1.5e-08 64.7 313 30.0
FAN13G0480 Fragaria x ananassa HOM05D006637 ORTHO05D001736 1.5e-08 64.7 322 29.8
Sp2g14470 Schrenkiella parvula HOM05D003787 ORTHO05D001736 1.5e-08 64.7 109 42.2
THA.LOC104801821 Tarenaya hassleriana HOM05D003787 ORTHO05D001736 1.5e-08 64.7 109 40.4
BcaB07g30663 Brassica carinata HOM05D003787 ORTHO05D001736 2.0e-08 64.3 93 43.0
CSS0023913 Camellia sinensis var. sinensis HOM05D003787 ORTHO05D001736 2.0e-08 64.3 347 27.1
Glyma.17G078600 Glycine max HOM05D006637 ORTHO05D001736 2.6e-08 63.9 229 30.1
Lalb_Chr07g0178311 Lupinus albus HOM05D006637 ORTHO05D001736 2.6e-08 63.9 318 29.9
Nitab4.5_0003841g0060 Nicotiana tabacum HOM05D003787 ORTHO05D001736 2.6e-08 63.9 151 37.1
Gorai.003G101400 Gossypium raimondii HOM05D006637 ORTHO05D001736 3.3e-08 63.5 171 36.3
Oeu044877.1 Olea europaea HOM05D006637 ORTHO05D001736 4.4e-08 63.2 199 32.7
AL5G13410 Arabidopsis lyrata HOM05D006637 ORTHO05D001736 5.7e-08 62.8 85 48.2
BolC9t56002H Brassica oleracea HOM05D005523 ORTHO05D007089 5.7e-08 62.8 94 44.7
BraA09t38045Z Brassica rapa HOM05D003787 ORTHO05D001736 5.7e-08 62.8 94 44.7
FAN18G2922 Fragaria x ananassa HOM05D006637 ORTHO05D001736 5.7e-08 62.8 337 31.5
Glyma.05G020700 Glycine max HOM05D006637 ORTHO05D001736 5.7e-08 62.8 347 28.5
Aqoxy3G00509 Aquilegia oxysepala HOM05D006637 ORTHO05D001736 7.5e-08 62.4 189 35.4
Rhsim12G0148600 Rhododendron simsii HOM05D006637 ORTHO05D001736 7.5e-08 62.4 218 34.9
AUR62021555 Chenopodium quinoa HOM05D006637 ORTHO05D001736 9.7e-08 62.0 175 34.9
Haze_07733 Corylus avellana HOM05D006637 ORTHO05D001736 9.7e-08 62.0 221 33.0
ECA238G2630 Erigeron canadensis HOM05D003787 ORTHO05D001736 1.3e-07 61.6 282 31.2
Phvul.009G201900 Phaseolus vulgaris HOM05D006637 ORTHO05D001736 1.3e-07 61.6 350 29.4
Sc10g0009690 Simmondsia chinensis HOM05D006637 ORTHO05D001736 1.3e-07 61.6 336 28.3
Lj5C102T22 Lonicera japonica HOM05D006637 ORTHO05D001736 1.7e-07 61.2 271 28.4
Duzib268G1106 Durio zibethinus HOM05D003787 ORTHO05D001736 2.2e-07 60.8 125 37.6
FvH4_5g13780 Fragaria vesca HOM05D006637 ORTHO05D001736 2.2e-07 60.8 336 31.0
BcaC04g21469 Brassica carinata HOM05D000070 ORTHO05D006344 2.8e-07 60.5 93 44.1
GSVIVG01007850001 Vitis vinifera HOM05D006637 ORTHO05D001736 2.8e-07 60.5 307 28.7
Potri.010G158000 Populus trichocarpa HOM05D003787 ORTHO05D001736 3.7e-07 60.1 307 28.0
SHI15724 Sapria himalayana HOM05D003787 ORTHO05D001736 3.7e-07 60.1 149 36.9
ClCG05G023700 Citrullus lanatus HOM05D003787 ORTHO05D001736 4.8e-07 59.7 101 42.6
Dinv16736 Davidia involucrata HOM05D003787 ORTHO05D001736 4.8e-07 59.7 197 37.1
Rhsim09G0127000 Rhododendron simsii HOM05D003787 ORTHO05D001736 4.8e-07 59.7 121 41.3
Solyc02g088840.3 Solanum lycopersicum HOM05D003787 ORTHO05D001736 4.8e-07 59.7 60 53.3
VMungo1215G2016 Vigna mungo HOM05D006637 ORTHO05D001736 4.8e-07 59.7 314 29.6
Dinv33830 Davidia involucrata HOM05D003787 ORTHO05D001736 6.3e-07 59.3 229 30.6
Peaxi162Scf00166g00047 Petunia axillaris HOM05D003787 ORTHO05D001736 8.2e-07 58.9 180 35.6
THA.LOC104805198 Tarenaya hassleriana HOM05D003787 ORTHO05D001736 8.2e-07 58.9 95 45.3
Duzib251G0768 Durio zibethinus HOM05D003787 ORTHO05D001736 1.1e-06 58.5 148 38.5
Migut.K01274 Erythranthe guttata HOM05D003787 ORTHO05D001736 1.1e-06 58.5 109 44.0
Sp7g02800 Schrenkiella parvula HOM05D011849 ORTHO05D001736 1.1e-06 58.5 53 58.5
Aa31LG2G7040 Aethionema arabicum HOM05D003787 ORTHO05D001736 1.4e-06 58.2 69 52.2
CDE02G2765 Ceratophyllum demersum HOM05D003787 ORTHO05D001736 1.4e-06 58.2 233 27.5
Ca_14358_v3 Cicer arietinum L. HOM05D006637 ORTHO05D001736 1.4e-06 58.2 351 27.9
Migut.L01187 Erythranthe guttata HOM05D003787 ORTHO05D001736 1.4e-06 58.2 83 45.8
PGR119G1736 Punica granatum HOM05D003787 ORTHO05D001736 1.8e-06 57.8 143 35.0
vmacro16493 Vaccinium macrocarpon HOM05D006637 ORTHO05D001736 1.8e-06 57.8 165 35.8
MD17G1059900 Malus domestica HOM05D003787 ORTHO05D001736 2.4e-06 57.4 72 44.4
Sopen02g033550 Solanum pennellii HOM05D003787 ORTHO05D001736 2.4e-06 57.4 129 35.7
COL.COLO4_06852 Corchorus olitorius HOM05D006637 ORTHO05D001736 3.1e-06 57.0 273 30.4
Gohir.A11G072600 Gossypium hirsutum HOM05D003787 ORTHO05D001736 3.1e-06 57.0 237 29.5
Carub.0007s3672 Capsella rubella HOM05D011849 ORTHO05D001736 4.1e-06 56.6 53 54.7
Haze_11903 Corylus avellana HOM05D003787 ORTHO05D001736 4.1e-06 56.6 150 35.3
MELO3C022033.2 Cucumis melo HOM05D003787 ORTHO05D001736 4.1e-06 56.6 67 50.7
DCAR_025433 Daucus carota HOM05D003787 ORTHO05D001736 4.1e-06 56.6 240 31.7
Dinv22776 Davidia involucrata HOM05D006637 ORTHO05D001736 4.1e-06 56.6 262 30.5
Psat1g068800 Pisum sativum HOM05D003787 ORTHO05D001736 4.1e-06 56.6 126 37.3
SalBow1G3309 Salvia bowleyana HOM05D003787 ORTHO05D001736 4.1e-06 56.6 48 58.3
SalBow1G5677 Salvia bowleyana HOM05D003787 ORTHO05D001736 4.1e-06 56.6 48 58.3
TPR.G12192 Trifolium pratense HOM05D006637 ORTHO05D001736 4.1e-06 56.6 297 27.9
CARHR263210 Cardamine hirsuta HOM05D011849 ORTHO05D001736 5.3e-06 56.2 53 56.6
Thhalv10028226m.g Eutrema salsugineum HOM05D011849 ORTHO05D001736 5.3e-06 56.2 53 56.6
Gorai.007G082600 Gossypium raimondii HOM05D003787 ORTHO05D001736 5.3e-06 56.2 238 29.0
Os07g0298100 Oryza sativa ssp. japonica HOM05D003787 ORTHO05D001736 5.3e-06 56.2 255 31.4
ClCG11G004790 Citrullus lanatus HOM05D003787 ORTHO05D001736 7.0e-06 55.8 68 50.0
A09p24510 Brassica napus HOM05D003787 ORTHO05D001736 9.1e-06 55.5 249 29.3
CANSAT64G2286 Cannabis sativa HOM05D003787 ORTHO05D001736 9.1e-06 55.5 57 56.1
PGSC0003DMG400024635 Solanum tuberosum HOM05D006637 ORTHO05D001736 9.1e-06 55.5 316 28.2


User provided reference genes

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