Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G33760 Arabidopsis lyrata HOM05D005975 ORTHO05D007373 0.0e+00 1258.4 626 100.0
AT1G73930 Arabidopsis thaliana HOM05D005975 ORTHO05D007373 0.0e+00 1223.0 626 97.4
CARHR067040 Cardamine hirsuta HOM05D005975 ORTHO05D007373 0.0e+00 1198.3 626 95.5
Thhalv10018286m.g Eutrema salsugineum HOM05D005975 ORTHO05D007373 0.0e+00 1193.7 626 95.2
Sp5g29130 Schrenkiella parvula HOM05D005975 ORTHO05D007373 0.0e+00 1129.0 624 90.5
A02p18950 Brassica napus HOM05D005975 ORTHO05D007373 0.0e+00 1104.7 631 88.3
BolC2t09180H Brassica oleracea HOM05D005975 ORTHO05D007373 0.0e+00 1099.3 631 88.1
BraA02t06937Z Brassica rapa HOM05D005975 ORTHO05D007373 0.0e+00 1097.4 631 88.1
C02p31490 Brassica napus HOM05D005975 ORTHO05D007373 0.0e+00 1092.8 631 87.3
BcaB05g24819 Brassica carinata HOM05D005975 ORTHO05D007373 0.0e+00 1092.0 630 86.8
BcaC03g15468 Brassica carinata HOM05D005975 ORTHO05D007373 0.0e+00 1087.0 631 87.5
Aa31LG4G4220 Aethionema arabicum HOM05D005975 ORTHO05D007373 0.0e+00 1078.9 626 87.1
THA.LOC104808292 Tarenaya hassleriana HOM05D005975 ORTHO05D007373 5.2e-308 1060.4 622 83.9
Thecc.03G028700 Theobroma cacao HOM05D005975 ORTHO05D007373 3.7e-290 1001.1 652 76.4
Duzib205G1016 Durio zibethinus HOM05D005975 ORTHO05D007373 1.0e-287 993.0 657 75.5
RcHm_v2.0_Chr7g0184651 Rosa chinensis HOM05D005975 ORTHO05D007373 4.3e-286 987.6 657 74.6
Ciclev10019197m.g Citrus clementina HOM05D005975 ORTHO05D007373 1.8e-284 982.2 657 74.0
FvH4_5g12680 Fragaria vesca HOM05D005975 ORTHO05D007373 5.2e-284 980.7 652 74.1
FAN18G3396 Fragaria x ananassa HOM05D005975 ORTHO05D007373 1.5e-283 979.2 652 74.1
Gohir.A11G007000 Gossypium hirsutum HOM05D005975 ORTHO05D007373 1.3e-282 976.1 654 74.2
FAN08G0232 Fragaria x ananassa HOM05D005975 ORTHO05D007373 1.7e-282 975.7 654 74.0
Gohir.D11G006100 Gossypium hirsutum HOM05D005975 ORTHO05D007373 8.3e-282 973.4 654 73.9
Gorai.007G007400 Gossypium raimondii HOM05D005975 ORTHO05D007373 1.1e-281 973.0 654 74.0
MD06G1211600 Malus domestica HOM05D005975 ORTHO05D007373 9.2e-281 969.9 655 73.6
Eucgr.B00701 Eucalyptus grandis HOM05D005975 ORTHO05D007373 1.2e-280 969.5 648 73.6
FAN04G2679 Fragaria x ananassa HOM05D005975 ORTHO05D007373 1.6e-280 969.1 668 72.5
MD14G1222100 Malus domestica HOM05D005975 ORTHO05D007373 4.6e-280 967.6 651 74.0
Manes.05G139300 Manihot esculenta HOM05D005975 ORTHO05D007373 1.3e-279 966.1 659 72.8
FAN13G1844 Fragaria x ananassa HOM05D005975 ORTHO05D007373 1.7e-279 965.7 663 72.5
PGR083G1175 Punica granatum HOM05D005975 ORTHO05D007373 2.5e-278 961.8 651 72.7
Hma1.2p1_0592F.1_g185285 Hydrangea macrophylla HOM05D005975 ORTHO05D007373 2.6e-275 951.8 649 73.0
CiPaw.15G127100 Carya illinoinensis HOM05D005975 ORTHO05D007373 9.8e-275 949.9 672 71.6
Phvul.009G200500 Phaseolus vulgaris HOM05D005975 ORTHO05D007373 1.7e-274 949.1 629 73.8
GSVIVG01008239001 Vitis vinifera HOM05D005975 ORTHO05D007373 1.7e-274 949.1 632 75.5
Potri.015G049900 Populus trichocarpa HOM05D005975 ORTHO05D007373 4.9e-274 947.6 655 72.7
Rhsim08G0136800 Rhododendron simsii HOM05D005975 ORTHO05D007373 6.4e-274 947.2 634 73.2
Potri.012G060200 Populus trichocarpa HOM05D005975 ORTHO05D007373 1.6e-272 942.6 661 72.5
CSS0000913 Camellia sinensis var. sinensis HOM05D005975 ORTHO05D007373 3.5e-272 941.4 667 71.1
PSO063G1047 Papaver somniferum HOM05D005975 ORTHO05D007373 7.8e-272 940.3 654 71.7
Lj1g0009400 Lotus japonicus HOM05D005975 ORTHO05D007373 3.0e-271 938.3 637 73.2
TAR622G0473 Trochodendron aralioides HOM05D005975 ORTHO05D007373 3.9e-271 937.9 658 70.4
Sabra12G0043300 Salix brachista HOM05D005975 ORTHO05D007373 8.6e-271 936.8 651 72.4
Atru.chr9.776 Acer truncatum HOM05D005975 ORTHO05D007373 3.3e-270 934.9 618 74.8
PSO782G2585 Papaver somniferum HOM05D005975 ORTHO05D007373 4.3e-270 934.5 654 71.4
Ca_23135_v3 Cicer arietinum L. HOM05D005975 ORTHO05D007373 9.5e-270 933.3 630 72.9
Glyma.06G210800 Glycine max HOM05D005975 ORTHO05D007373 1.6e-269 932.6 632 72.9
Glyma.17G121100 Glycine max HOM05D005975 ORTHO05D007373 4.0e-268 927.9 657 70.0
TAR374G1293 Trochodendron aralioides HOM05D005975 ORTHO05D007373 1.5e-267 926.0 657 70.3
Peaxi162Scf00015g00726 Petunia axillaris HOM05D005975 ORTHO05D007373 2.0e-267 925.6 649 70.0
Haze_18619 Corylus avellana HOM05D005975 ORTHO05D007373 2.6e-267 925.2 600 75.3
QL10p022556 Quercus lobata HOM05D005975 ORTHO05D007373 2.6e-267 925.2 606 75.4
Lalb_Chr12g0197601 Lupinus albus HOM05D005975 ORTHO05D007373 4.4e-267 924.5 657 70.6
Glyma.04G152200 Glycine max HOM05D005975 ORTHO05D007373 5.8e-267 924.1 632 72.0
DCAR_015134 Daucus carota HOM05D005975 ORTHO05D007373 1.7e-266 922.5 630 71.7
VMungo1215G0359 Vigna mungo HOM05D005975 ORTHO05D007373 4.9e-266 921.0 647 70.6
ClCG06G015000 Citrullus lanatus HOM05D005975 ORTHO05D007373 5.4e-265 917.5 652 70.7
Cpa.g.sc549.1 Carica papaya HOM05D005975 ORTHO05D007373 7.1e-265 917.1 601 76.0
Hund02524 Selenicereus undatus HOM05D005975 ORTHO05D007373 7.1e-265 917.1 652 70.9
Psat1g024880 Pisum sativum HOM05D005975 ORTHO05D007373 9.2e-265 916.8 629 72.2
Sed0024013 Sechium edule HOM05D005975 ORTHO05D007373 9.2e-265 916.8 650 70.8
CsaV3_1G003650 Cucumis sativus L. HOM05D005975 ORTHO05D007373 1.2e-264 916.4 651 71.0
Actinidia31028 Actinidia chinensis HOM05D005975 ORTHO05D007373 1.6e-264 916.0 643 71.2
Aqoxy3G03906 Aquilegia oxysepala HOM05D005975 ORTHO05D007373 1.6e-264 916.0 650 70.6
MELO3C017289.2 Cucumis melo HOM05D005975 ORTHO05D007373 3.5e-264 914.8 652 70.9
Dinv38586 Davidia involucrata HOM05D005975 ORTHO05D007373 3.5e-264 914.8 600 75.2
ECA232G0421 Erigeron canadensis HOM05D005975 ORTHO05D007373 3.5e-264 914.8 633 71.7
HanXRQChr09g0269781 Helianthus annuus HOM05D005975 ORTHO05D007373 5.1e-263 911.0 636 70.6
Cc04_g07500 Coffea canephora HOM05D005975 ORTHO05D007373 6.6e-263 910.6 650 69.4
TPR.G10356 Trifolium pratense HOM05D005975 ORTHO05D007373 1.5e-262 909.4 639 71.2
Nitab4.5_0001599g0180 Nicotiana tabacum HOM05D005975 ORTHO05D007373 5.6e-262 907.5 650 69.4
SGA_v2.0_scaffold25G10981 Striga asiatica HOM05D005975 ORTHO05D007373 7.3e-262 907.1 633 70.0
VMungo1309G0041 Vigna mungo HOM05D005975 ORTHO05D007373 2.1e-261 905.6 579 74.4
Ah.11g047090 Amaranthus hybridus HOM05D005975 ORTHO05D007373 3.6e-261 904.8 630 70.8
AUR62036958 Chenopodium quinoa HOM05D005975 ORTHO05D007373 6.2e-261 904.0 653 69.8
Oeu024324.1 Olea europaea HOM05D005975 ORTHO05D007373 4.0e-260 901.4 630 71.0
PGSC0003DMG400005625 Solanum tuberosum HOM05D005975 ORTHO05D007373 4.0e-260 901.4 653 68.6
Sopen03g038600 Solanum pennellii HOM05D005975 ORTHO05D007373 5.2e-260 901.0 653 68.5
AUR62032193 Chenopodium quinoa HOM05D005975 ORTHO05D007373 1.2e-259 899.8 650 69.5
Solyc03g119750.4 Solanum lycopersicum HOM05D005975 ORTHO05D007373 5.8e-259 897.5 653 68.3
arahy.Tifrunner.gnm1.ann1.1K5T8S Arachis hypogaea HOM05D005975 ORTHO05D007373 2.4e-257 892.1 602 72.9
Nitab4.5_0000410g0070 Nicotiana tabacum HOM05D005975 ORTHO05D007373 9.3e-257 890.2 650 68.6
Lsat_1_v5_gn_3_10441 Lactuca sativa HOM05D005975 ORTHO05D007373 1.6e-256 889.4 626 70.3
Sc10g0009550 Simmondsia chinensis HOM05D005975 ORTHO05D007373 1.6e-256 889.4 649 67.6
MBI19_g38388_MAGBIO Magnolia biondii HOM05D005975 ORTHO05D007373 2.7e-256 888.6 644 69.1
vmacro17674 Vaccinium macrocarpon HOM05D005975 ORTHO05D007373 2.3e-255 885.6 585 73.5
Carub.0002s2070 Capsella rubella HOM05D005975 ORTHO05D007373 1.6e-253 879.4 461 96.3
Hund10002 Selenicereus undatus HOM05D005975 ORTHO05D007373 1.6e-253 879.4 651 67.4
EL10Ac5g11254 Beta vulgaris HOM05D005975 ORTHO05D007373 3.0e-247 858.6 603 69.8
Migut.I00389 Erythranthe guttata HOM05D005975 ORTHO05D007373 3.0e-247 858.6 660 66.4
CAN.G438.116 Capsicum annuum HOM05D005975 ORTHO05D007373 9.6e-246 853.6 604 68.9
Lj9A429T54 Lonicera japonica HOM05D005975 ORTHO05D007373 1.3e-245 853.2 601 70.5
Prupe.5G217600 Prunus persica HOM05D005975 ORTHO05D007373 2.4e-244 849.0 522 80.1
MSTRG.22940 Avicennia marina HOM05D005975 ORTHO05D007373 1.5e-238 829.7 605 67.4
ATR0753G136 Amborella trichopoda HOM05D005975 ORTHO05D007373 2.5e-233 812.4 718 58.4
Phvul.003G176900 Phaseolus vulgaris HOM05D005975 ORTHO05D007373 1.8e-231 806.2 518 75.7
Os03g0259700 Oryza sativa ssp. japonica HOM05D005975 ORTHO05D007373 1.9e-222 776.2 636 62.3
SalBow5G4970 Salvia bowleyana HOM05D005975 ORTHO05D007373 1.3e-221 773.5 648 63.0
unitig_22.g6248 Utricularia gibba HOM05D005975 ORTHO05D007373 1.4e-220 770.0 639 61.5
Sabra15G0077800 Salix brachista HOM05D005975 ORTHO05D007373 6.9e-220 767.7 651 62.2
Glyma.05G013100 Glycine max HOM05D005975 ORTHO05D007373 1.5e-211 740.0 625 61.9
SEGI_09157 Sequoiadendron giganteum HOM05D005975 ORTHO05D007373 5.9e-211 738.0 786 50.6
Zm00001eb011310 Zea mays HOM05D005975 ORTHO05D007373 3.8e-202 708.8 561 62.9
COL.COLO4_22722 Corchorus olitorius HOM05D005975 ORTHO05D007373 1.2e-200 703.7 447 78.1
AagrBONN_evm.TU.Sc2ySwM_228.4839 Anthoceros agrestis HOM05D005975 ORTHO05D007373 1.6e-200 703.4 818 46.5
Pp3c4_11450 Physcomitrium patens HOM05D005975 ORTHO05D007373 2.7e-200 702.6 731 49.7
Pp3c12_18170 Physcomitrium patens HOM05D005975 ORTHO05D007373 1.5e-198 696.8 733 49.7
Mapoly0016s0160 Marchantia polymorpha HOM05D005975 ORTHO05D007373 2.2e-197 693.0 839 45.4
SMO367G0788 Selaginella moellendorffii HOM05D005975 ORTHO05D007373 5.5e-193 678.3 627 56.1
Nn3g17719 Nelumbo nucifera HOM05D005975 ORTHO05D007373 2.0e-174 616.7 423 72.3
CDE05G1454 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 9.5e-169 597.8 520 59.6
CBR_g30105 Chara braunii HOM05D005975 ORTHO05D007373 4.4e-158 562.4 546 54.2
TAR622G1340 Trochodendron aralioides HOM05D005975 ORTHO05D007373 5.4e-140 502.3 417 62.4
PSO074G0001 Papaver somniferum HOM05D005975 ORTHO05D007373 4.6e-123 446.0 306 70.3
CDE05G3359 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 3.9e-122 443.0 377 61.3
HPP92_016579 Vanilla planifolia HOM05D005975 ORTHO05D007373 2.8e-112 410.2 313 63.9
arahy.Tifrunner.gnm1.ann1.CEL6SJ Arachis hypogaea HOM05D005975 ORTHO05D007373 1.7e-109 401.0 261 75.1
BcaB05g24817 Brassica carinata HOM05D005975 ORTHO05D007373 7.4e-105 385.6 215 89.3
HPP92_016580 Vanilla planifolia HOM05D005975 ORTHO05D007373 3.0e-90 337.0 239 69.5
SMO146G0145 Selaginella moellendorffii HOM05D005975 ORTHO05D007373 2.0e-81 307.8 336 50.6
Zm00001eb237870 Zea mays HOM05D005975 ORTHO05D007373 1.1e-79 302.0 516 39.3
Zm00001eb078910 Zea mays HOM05D005975 ORTHO05D007373 3.3e-60 237.3 151 72.2
Cre14.g633500 Chlamydomonas reinhardtii HOM05D005975 ORTHO05D007373 5.4e-39 166.8 432 29.9
CDE05G0573 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 8.9e-34 149.4 122 64.8
Nn3g18207 Nelumbo nucifera HOM05D005975 ORTHO05D007373 1.5e-33 148.7 139 55.4
Nn4g23789 Nelumbo nucifera HOM05D005975 ORTHO05D007373 3.3e-12 77.8 139 36.0
Nn1g03516 Nelumbo nucifera HOM05D005975 ORTHO05D007373 4.8e-11 73.9 49 77.6
Cfa019814 Carpinus fangiana HOM05D005975 ORTHO05D007373 1.3e-08 65.9 52 69.2
Dinv38585 Davidia involucrata HOM05D005975 ORTHO05D007373 2.2e-08 65.1 43 74.4
Potri.001G289250 Populus trichocarpa HOM05D005975 ORTHO05D007373 3.2e-07 61.2 48 60.4
Lj9A429T53 Lonicera japonica HOM05D005975 ORTHO05D007373 6.0e-06 57.0 43 67.4


User provided reference genes

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