Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G33580 Arabidopsis lyrata HOM05D003094 ORTHO05D003482 2.9e-90 335.5 210 100.0
AT1G73770 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 6.4e-53 211.5 210 61.4
Thhalv10019822m.g Eutrema salsugineum HOM05D003094 ORTHO05D003482 3.9e-50 202.2 133 78.2
Sp5g28960 Schrenkiella parvula HOM05D003094 ORTHO05D003482 9.6e-49 197.6 138 73.2
A02p18880 Brassica napus HOM05D003094 ORTHO05D003482 1.7e-45 186.8 136 73.5
BraA02t06932Z Brassica rapa HOM05D003094 ORTHO05D003482 1.1e-44 184.1 140 71.4
Carub.0002s2052 Capsella rubella HOM05D003094 ORTHO05D003482 1.2e-43 180.6 153 68.0
BcaC03g15460 Brassica carinata HOM05D003094 ORTHO05D003482 1.6e-43 180.3 134 70.1
BolC2t09174H Brassica oleracea HOM05D003094 ORTHO05D003482 1.6e-43 180.3 134 70.1
BcaB05g24812 Brassica carinata HOM05D003094 ORTHO05D003482 3.9e-42 175.6 248 56.5
C02p31410 Brassica napus HOM05D003094 ORTHO05D003482 1.5e-41 173.7 142 69.7
CARHR066840 Cardamine hirsuta HOM05D003094 ORTHO05D003482 1.9e-41 173.3 219 59.8
Aa31LG4G4100 Aethionema arabicum HOM05D003094 ORTHO05D003482 3.3e-33 146.0 125 61.6
THA.LOC104812151 Tarenaya hassleriana HOM05D003094 ORTHO05D003482 5.3e-23 112.1 147 48.3
Atru.chr9.906 Acer truncatum HOM05D003094 ORTHO05D003482 9.1e-15 84.7 136 42.6
Gohir.D13G152004 Gossypium hirsutum HOM05D003094 ORTHO05D003482 2.6e-14 83.2 153 38.6
Gohir.A13G146900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 2.2e-13 80.1 153 37.9
Gohir.D13G151300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 6.5e-13 78.6 153 37.3
Gorai.013G169300 Gossypium raimondii HOM05D003094 ORTHO05D003482 6.5e-13 78.6 152 38.2
Gohir.A13G146300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.4e-12 77.4 153 36.6
Atru.chr9.905 Acer truncatum HOM05D003094 ORTHO05D003482 1.9e-12 77.0 154 37.7
Gorai.013G170500 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.9e-12 77.0 153 36.6
Gorai.001G067600 Gossypium raimondii HOM05D003094 ORTHO05D003482 2.5e-12 76.6 105 47.6
TWI81G0976 Tripterygium wilfordii HOM05D003094 ORTHO05D003482 2.5e-12 76.6 127 41.7
AL3G31470 Arabidopsis lyrata HOM05D003094 ORTHO05D003482 4.2e-12 75.9 153 36.6
Thecc.07G091700 Theobroma cacao HOM05D003094 ORTHO05D003482 4.2e-12 75.9 153 35.9
Gohir.A07G059300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 5.5e-12 75.5 105 46.7
Gorai.002G151500 Gossypium raimondii HOM05D003094 ORTHO05D003482 5.5e-12 75.5 135 37.8
Gohir.D07G064100 Gossypium hirsutum HOM05D003094 ORTHO05D003482 7.2e-12 75.1 105 46.7
Psat7g083520 Pisum sativum HOM05D003094 ORTHO05D003482 7.2e-12 75.1 140 40.7
Dinv07353 Davidia involucrata HOM05D003094 ORTHO05D003482 9.4e-12 74.7 86 48.8
Dinv09627 Davidia involucrata HOM05D003094 ORTHO05D003482 9.4e-12 74.7 86 48.8
Duzib084G0458 Durio zibethinus HOM05D003094 ORTHO05D003482 1.6e-11 73.9 100 48.0
Duzib213G0897 Durio zibethinus HOM05D003094 ORTHO05D003482 2.1e-11 73.6 153 34.0
TWI60G1358 Tripterygium wilfordii HOM05D003094 ORTHO05D003482 2.1e-11 73.6 151 34.4
Carub.0003s1800 Capsella rubella HOM05D003094 ORTHO05D003482 2.7e-11 73.2 148 34.5
AUR62042498 Chenopodium quinoa HOM05D003094 ORTHO05D003482 2.7e-11 73.2 154 34.4
EL10Ac7g16627 Beta vulgaris HOM05D003094 ORTHO05D003482 6.1e-11 72.0 154 37.0
MELO3C002109.2 Cucumis melo HOM05D003094 ORTHO05D003482 7.9e-11 71.6 80 46.2
CANSAT80G1577 Cannabis sativa HOM05D003094 ORTHO05D003482 1.0e-10 71.2 150 32.7
VMungo0251G1973 Vigna mungo HOM05D003094 ORTHO05D003482 1.0e-10 71.2 134 35.8
EL10Ac4g10181 Beta vulgaris HOM05D003094 ORTHO05D003482 1.8e-10 70.5 154 37.0
CsaV3_1G006930 Cucumis sativus L. HOM05D003094 ORTHO05D003482 1.8e-10 70.5 76 48.7
AT3G18240 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 2.3e-10 70.1 148 35.8
Cpa.g.sc3.463 Carica papaya HOM05D003094 ORTHO05D003482 3.0e-10 69.7 136 36.0
Prupe.5G225000 Prunus persica HOM05D003094 ORTHO05D003482 3.0e-10 69.7 141 35.5
BcaC05g28648 Brassica carinata HOM05D003094 ORTHO05D003482 3.9e-10 69.3 155 36.1
CiPaw.16G089200 Carya illinoinensis HOM05D003094 ORTHO05D003482 3.9e-10 69.3 150 35.3
ClCG06G014600 Citrullus lanatus HOM05D003094 ORTHO05D003482 3.9e-10 69.3 153 37.3
MD06G1220500 Malus domestica HOM05D003094 ORTHO05D003482 5.1e-10 68.9 150 36.0
MD14G1229900 Malus domestica HOM05D003094 ORTHO05D003482 5.1e-10 68.9 150 34.7
Dinv17506 Davidia involucrata HOM05D003094 ORTHO05D003482 6.7e-10 68.6 86 46.5
Cpa.g.sc51.5 Carica papaya HOM05D003094 ORTHO05D003482 8.8e-10 68.2 151 38.4
CDE11G0955 Ceratophyllum demersum HOM05D003094 ORTHO05D003482 8.8e-10 68.2 146 32.9
Sed0020442 Sechium edule HOM05D003094 ORTHO05D003482 8.8e-10 68.2 159 32.1
C05p47760 Brassica napus HOM05D003094 ORTHO05D003482 1.1e-09 67.8 156 35.3
Sed0019035 Sechium edule HOM05D003094 ORTHO05D003482 1.1e-09 67.8 96 42.7
Ca_11586_v3 Cicer arietinum L. HOM05D003094 ORTHO05D003482 1.5e-09 67.4 140 37.1
Glyma.05G139400 Glycine max HOM05D003094 ORTHO05D003482 1.5e-09 67.4 133 36.8
PGR044G0078 Punica granatum HOM05D003094 ORTHO05D003482 1.5e-09 67.4 151 33.8
Ah.11g047710 Amaranthus hybridus HOM05D003094 ORTHO05D003482 2.0e-09 67.0 94 42.6
AT4G21460 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 2.0e-09 67.0 146 34.9
Glyma.08G094700 Glycine max HOM05D003094 ORTHO05D003482 2.0e-09 67.0 133 37.6
vmacro16434 Vaccinium macrocarpon HOM05D003094 ORTHO05D003482 2.0e-09 67.0 88 46.6
BolC5t33491H Brassica oleracea HOM05D003094 ORTHO05D003482 2.6e-09 66.6 152 35.5
CiPaw.16G089100 Carya illinoinensis HOM05D003094 ORTHO05D003482 2.6e-09 66.6 150 34.7
Actinidia19943 Actinidia chinensis HOM05D003094 ORTHO05D003482 4.4e-09 65.9 163 31.9
arahy.Tifrunner.gnm1.ann1.D1K70W Arachis hypogaea HOM05D003094 ORTHO05D003482 4.4e-09 65.9 139 36.0
Ciclev10023622m.g Citrus clementina HOM05D003094 ORTHO05D003482 4.4e-09 65.9 72 51.4
Hund02353 Selenicereus undatus HOM05D003094 ORTHO05D003482 4.4e-09 65.9 84 45.2
THA.LOC104820380 Tarenaya hassleriana HOM05D003094 ORTHO05D003482 4.4e-09 65.9 152 35.5
BraA05t21983Z Brassica rapa HOM05D003094 ORTHO05D003482 5.7e-09 65.5 150 34.7
AUR62040348 Chenopodium quinoa HOM05D003094 ORTHO05D003482 5.7e-09 65.5 153 32.7
MBI16_g44830_MAGBIO Magnolia biondii HOM05D003094 ORTHO05D003482 5.7e-09 65.5 109 37.6
EL10Ac5g11481 Beta vulgaris HOM05D003094 ORTHO05D003482 7.4e-09 65.1 129 35.7
A05p31440 Brassica napus HOM05D003094 ORTHO05D003482 7.4e-09 65.1 150 34.7
Cfa019732 Carpinus fangiana HOM05D003094 ORTHO05D003482 7.4e-09 65.1 177 31.6
Phvul.002G182800 Phaseolus vulgaris HOM05D003094 ORTHO05D003482 7.4e-09 65.1 141 34.0
TAR374G0733 Trochodendron aralioides HOM05D003094 ORTHO05D003482 7.4e-09 65.1 132 36.4
arahy.Tifrunner.gnm1.ann1.2IG2A1 Arachis hypogaea HOM05D003094 ORTHO05D003482 9.7e-09 64.7 97 42.3
Hund11930 Selenicereus undatus HOM05D003094 ORTHO05D003482 9.7e-09 64.7 138 36.2
GSVIVG01008338001 Vitis vinifera HOM05D003094 ORTHO05D003482 9.7e-09 64.7 70 47.1
TAR374G0309 Trochodendron aralioides HOM05D003094 ORTHO05D003482 1.3e-08 64.3 132 34.1
PSO063G0897 Papaver somniferum HOM05D003094 ORTHO05D003482 1.7e-08 63.9 155 35.5
Peaxi162Scf00683g00159 Petunia axillaris HOM05D003094 ORTHO05D003482 1.7e-08 63.9 158 29.7
ECA238G4750 Erigeron canadensis HOM05D003094 ORTHO05D003482 2.2e-08 63.5 142 31.7
Manes.01G015200 Manihot esculenta HOM05D003094 ORTHO05D003482 2.8e-08 63.2 140 37.1
Manes.05G133000 Manihot esculenta HOM05D003094 ORTHO05D003482 2.8e-08 63.2 144 34.7
MELO3C017325.2 Cucumis melo HOM05D003094 ORTHO05D003482 3.7e-08 62.8 151 35.1
CsaV3_1G004020 Cucumis sativus L. HOM05D003094 ORTHO05D003482 3.7e-08 62.8 156 33.3
MD06G1220600 Malus domestica HOM05D003094 ORTHO05D003482 3.7e-08 62.8 136 35.3
PSO017G6706 Papaver somniferum HOM05D003094 ORTHO05D003482 3.7e-08 62.8 155 34.2
Lj9A424T34 Lonicera japonica HOM05D003094 ORTHO05D003482 4.8e-08 62.4 64 50.0
Actinidia36579 Actinidia chinensis HOM05D003094 ORTHO05D003482 6.3e-08 62.0 70 42.9
COL.COLO4_27184 Corchorus olitorius HOM05D003094 ORTHO05D003482 6.3e-08 62.0 153 33.3
SHI53281 Sapria himalayana HOM05D003094 ORTHO05D003482 6.3e-08 62.0 153 33.3
TPR.G35824 Trifolium pratense HOM05D003094 ORTHO05D003482 6.3e-08 62.0 135 34.8
Sc10g0009380 Simmondsia chinensis HOM05D003094 ORTHO05D003482 8.2e-08 61.6 76 42.1
Aa31LG8G5090 Aethionema arabicum HOM05D003094 ORTHO05D003482 1.1e-07 61.2 153 32.7
FAN14G2495 Fragaria x ananassa HOM05D003094 ORTHO05D003482 1.1e-07 61.2 68 39.7
Rhsim12G0141600 Rhododendron simsii HOM05D003094 ORTHO05D003482 1.1e-07 61.2 66 51.5
Sp3g16360 Schrenkiella parvula HOM05D003094 ORTHO05D003482 1.1e-07 61.2 158 29.7
PGSC0003DMG402005733 Solanum tuberosum HOM05D003094 ORTHO05D003482 1.1e-07 61.2 152 29.6
CSS0029576 Camellia sinensis var. sinensis HOM05D003094 ORTHO05D003482 1.4e-07 60.8 70 45.7
CARHR093590 Cardamine hirsuta HOM05D003094 ORTHO05D003482 1.4e-07 60.8 166 31.3
Ciclev10020325m.g Citrus clementina HOM05D003094 ORTHO05D003482 1.4e-07 60.8 153 32.7
FvH4_6g26830 Fragaria vesca HOM05D003094 ORTHO05D003482 1.4e-07 60.8 88 36.4
Rhsim10G0183200 Rhododendron simsii HOM05D003094 ORTHO05D003482 1.4e-07 60.8 68 44.1
RcHm_v2.0_Chr2g0128201 Rosa chinensis HOM05D003094 ORTHO05D003482 1.4e-07 60.8 155 31.0
COL.COLO4_38537 Corchorus olitorius HOM05D003094 ORTHO05D003482 1.8e-07 60.5 70 45.7
Actinidia35101 Actinidia chinensis HOM05D003094 ORTHO05D003482 2.4e-07 60.1 69 43.5
Cc04_g06860 Coffea canephora HOM05D003094 ORTHO05D003482 2.4e-07 60.1 72 40.3
Thhalv10020806m.g Eutrema salsugineum HOM05D003094 ORTHO05D003482 3.1e-07 59.7 74 37.8
FAN02G1016 Fragaria x ananassa HOM05D003094 ORTHO05D003482 3.1e-07 59.7 68 38.2
Dinv12225 Davidia involucrata HOM05D003094 ORTHO05D003482 4.1e-07 59.3 150 32.7
FAN05G2182 Fragaria x ananassa HOM05D003094 ORTHO05D003482 4.1e-07 59.3 68 38.2
Gorai.003G056600 Gossypium raimondii HOM05D003094 ORTHO05D003482 4.1e-07 59.3 115 36.5
Solyc03g119170.3 Solanum lycopersicum HOM05D003094 ORTHO05D003482 4.1e-07 59.3 160 29.4
TPR.G5116 Trifolium pratense HOM05D003094 ORTHO05D003482 4.1e-07 59.3 141 34.0
Lsat_1_v5_gn_2_64400 Lactuca sativa HOM05D003094 ORTHO05D003482 5.3e-07 58.9 158 25.9
Nitab4.5_0001986g0070 Nicotiana tabacum HOM05D003094 ORTHO05D003482 5.3e-07 58.9 76 40.8
Nitab4.5_0004955g0040 Nicotiana tabacum HOM05D003094 ORTHO05D003482 5.3e-07 58.9 76 40.8
FAN08G1507 Fragaria x ananassa HOM05D003094 ORTHO05D003482 7.0e-07 58.5 91 38.5
QL10p026547 Quercus lobata HOM05D003094 ORTHO05D003482 7.0e-07 58.5 151 31.1
Sopen03g038060 Solanum pennellii HOM05D003094 ORTHO05D003482 7.0e-07 58.5 74 40.5
Lj4g0013095 Lotus japonicus HOM05D003094 ORTHO05D003482 9.1e-07 58.2 79 41.8
Haze_18734 Corylus avellana HOM05D003094 ORTHO05D003482 1.2e-06 57.8 65 46.2
Haze_18735 Corylus avellana HOM05D003094 ORTHO05D003482 1.2e-06 57.8 152 34.2
FvH4_5g16690 Fragaria vesca HOM05D003094 ORTHO05D003482 1.2e-06 57.8 114 35.1
Potri.015G044100 Populus trichocarpa HOM05D003094 ORTHO05D003482 1.2e-06 57.8 148 31.8
ATR0757G079 Amborella trichopoda HOM05D003094 ORTHO05D003482 1.5e-06 57.4 70 42.9
Cfa019731 Carpinus fangiana HOM05D003094 ORTHO05D003482 1.5e-06 57.4 152 34.9
ClCG04G010900 Citrullus lanatus HOM05D003094 ORTHO05D003482 1.5e-06 57.4 85 42.4
FAN18G0043 Fragaria x ananassa HOM05D003094 ORTHO05D003482 1.5e-06 57.4 114 35.1
Eucgr.K02236 Eucalyptus grandis HOM05D003094 ORTHO05D003482 2.6e-06 56.6 68 44.1
ECA233G5083 Erigeron canadensis HOM05D003094 ORTHO05D003482 3.5e-06 56.2 74 50.0
AUR62029914 Chenopodium quinoa HOM05D003094 ORTHO05D003482 4.5e-06 55.8 67 47.8
FAN13G1164 Fragaria x ananassa HOM05D003094 ORTHO05D003482 4.5e-06 55.8 114 34.2
Sc04g0003380 Simmondsia chinensis HOM05D003094 ORTHO05D003482 4.5e-06 55.8 72 41.7
Cc04_g06850 Coffea canephora HOM05D003094 ORTHO05D003482 5.9e-06 55.5 94 39.4
Nitab4.5_0001986g0080 Nicotiana tabacum HOM05D003094 ORTHO05D003482 5.9e-06 55.5 134 32.8


User provided reference genes

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