Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G33010 Arabidopsis lyrata HOM05D005606 ORTHO05D006446 1.3e-291 1005.7 520 100.0
AT1G73240 Arabidopsis thaliana HOM05D005606 ORTHO05D006446 4.0e-282 974.2 520 96.3
Thhalv10018404m.g Eutrema salsugineum HOM05D005606 ORTHO05D006446 5.9e-273 943.7 520 93.1
Sp5g28210 Schrenkiella parvula HOM05D005606 ORTHO05D006446 1.3e-272 942.6 520 92.9
Carub.0002s2004 Capsella rubella HOM05D005606 ORTHO05D006446 1.1e-266 922.9 520 91.5
CARHR066250 Cardamine hirsuta HOM05D005606 ORTHO05D006446 2.2e-256 888.6 520 87.9
BcaB03g15036 Brassica carinata HOM05D005606 ORTHO05D006446 1.6e-249 865.9 520 85.6
C06p47380 Brassica napus HOM05D005606 ORTHO05D006446 4.7e-246 854.4 521 85.2
BcaC08g46742 Brassica carinata HOM05D005606 ORTHO05D006446 5.2e-245 850.9 521 84.6
A07p39190 Brassica napus HOM05D005606 ORTHO05D006446 8.8e-245 850.1 520 84.2
BolC6t39777H Brassica oleracea HOM05D005606 ORTHO05D006446 8.8e-245 850.1 521 85.2
BraA07t31468Z Brassica rapa HOM05D005606 ORTHO05D006446 2.2e-243 845.5 520 83.8
Aa31LG4G3530 Aethionema arabicum HOM05D005606 ORTHO05D006446 3.7e-235 818.1 520 82.1
THA.LOC104810627 Tarenaya hassleriana HOM05D005606 ORTHO05D006446 2.4e-226 788.9 521 79.3
Ciclev10023713m.g Citrus clementina HOM05D005606 ORTHO05D006446 5.9e-156 555.1 521 57.2
Manes.03G090364 Manihot esculenta HOM05D005606 ORTHO05D006446 2.9e-155 552.7 539 56.8
Manes.15G103000 Manihot esculenta HOM05D005606 ORTHO05D006446 1.4e-152 543.9 537 55.9
CANSAT35G0050 Cannabis sativa HOM05D005606 ORTHO05D006446 6.7e-152 541.6 544 55.9
TWI81G0505 Tripterygium wilfordii HOM05D005606 ORTHO05D006446 8.8e-152 541.2 535 54.8
Prupe.4G086400 Prunus persica HOM05D005606 ORTHO05D006446 9.7e-151 537.7 546 55.1
Dinv09771 Davidia involucrata HOM05D005606 ORTHO05D006446 2.0e-148 530.0 532 54.9
Atru.chr9.366 Acer truncatum HOM05D005606 ORTHO05D006446 1.3e-147 527.3 533 55.3
MD05G1278400 Malus domestica HOM05D005606 ORTHO05D006446 1.7e-147 526.9 550 53.6
Potri.001G013300 Populus trichocarpa HOM05D005606 ORTHO05D006446 5.0e-147 525.4 534 55.1
Cpa.g.sc111.40 Carica papaya HOM05D005606 ORTHO05D006446 6.5e-147 525.0 530 54.5
Eucgr.K02306 Eucalyptus grandis HOM05D005606 ORTHO05D006446 2.5e-146 523.1 543 54.1
CiPaw.09G118900 Carya illinoinensis HOM05D005606 ORTHO05D006446 7.2e-146 521.5 547 53.7
Sabra01G0009700 Salix brachista HOM05D005606 ORTHO05D006446 8.8e-144 514.6 549 52.8
GSVIVG01012914001 Vitis vinifera HOM05D005606 ORTHO05D006446 4.4e-143 512.3 525 55.0
CsaV3_6G052120 Cucumis sativus L. HOM05D005606 ORTHO05D006446 7.4e-143 511.5 546 51.8
Lalb_Chr20g0117701 Lupinus albus HOM05D005606 ORTHO05D006446 1.7e-142 510.4 542 53.5
ClCG01G024960 Citrullus lanatus HOM05D005606 ORTHO05D006446 2.2e-142 510.0 546 52.2
RcHm_v2.0_Chr5g0015011 Rosa chinensis HOM05D005606 ORTHO05D006446 4.8e-142 508.8 532 53.6
MD10G1257000 Malus domestica HOM05D005606 ORTHO05D006446 2.4e-141 506.5 547 52.5
QL05p054675 Quercus lobata HOM05D005606 ORTHO05D006446 2.6e-140 503.1 681 45.8
Cfa000886 Carpinus fangiana HOM05D005606 ORTHO05D006446 1.3e-139 500.7 548 53.5
FAN16G3646 Fragaria x ananassa HOM05D005606 ORTHO05D006446 1.7e-139 500.4 529 52.0
Lj5A166G73 Lonicera japonica HOM05D005606 ORTHO05D006446 3.8e-139 499.2 539 51.0
arahy.Tifrunner.gnm1.ann1.XD6SW7 Arachis hypogaea HOM05D005606 ORTHO05D006446 8.5e-139 498.0 527 52.9
FAN11G2201 Fragaria x ananassa HOM05D005606 ORTHO05D006446 1.1e-138 497.7 531 52.0
FAN25G1117 Fragaria x ananassa HOM05D005606 ORTHO05D006446 1.1e-138 497.7 535 51.6
Thecc.03G071900 Theobroma cacao HOM05D005606 ORTHO05D006446 3.2e-138 496.1 512 54.5
Nn4g24861 Nelumbo nucifera HOM05D005606 ORTHO05D006446 4.2e-138 495.7 536 51.7
FvH4_3g04970 Fragaria vesca HOM05D005606 ORTHO05D006446 5.5e-138 495.4 531 52.0
FAN21G0753 Fragaria x ananassa HOM05D005606 ORTHO05D006446 7.2e-138 495.0 539 51.6
Sed0002755 Sechium edule HOM05D005606 ORTHO05D006446 9.4e-138 494.6 543 50.8
Rhsim08G0124400 Rhododendron simsii HOM05D005606 ORTHO05D006446 1.4e-136 490.7 541 52.3
Sopen03g029090 Solanum pennellii HOM05D005606 ORTHO05D006446 4.0e-136 489.2 539 53.4
Solyc03g098340.4 Solanum lycopersicum HOM05D005606 ORTHO05D006446 6.7e-136 488.4 539 53.2
Sed0004896 Sechium edule HOM05D005606 ORTHO05D006446 8.8e-136 488.0 544 51.1
Lj6g0007906 Lotus japonicus HOM05D005606 ORTHO05D006446 5.7e-135 485.3 519 53.0
arahy.Tifrunner.gnm1.ann1.KIB2TD Arachis hypogaea HOM05D000001 ORTHO05D006446 7.5e-135 485.0 513 53.4
PGSC0003DMG400025630 Solanum tuberosum HOM05D005606 ORTHO05D006446 2.2e-134 483.4 539 52.3
arahy.Tifrunner.gnm1.ann1.J0D3J2 Arachis hypogaea HOM05D005606 ORTHO05D006446 9.1e-133 478.0 506 53.4
CSS0018749 Camellia sinensis var. sinensis HOM05D005606 ORTHO05D006446 1.2e-132 477.6 545 51.2
Cc04_g08790 Coffea canephora HOM05D005606 ORTHO05D006446 1.2e-132 477.6 537 50.5
SGA_v2.0_scaffold90G27762 Striga asiatica HOM05D005606 ORTHO05D006446 3.5e-132 476.1 538 52.6
SalBow5G2126 Salvia bowleyana HOM05D005606 ORTHO05D006446 1.3e-131 474.2 533 51.6
Gorai.004G048400 Gossypium raimondii HOM05D005606 ORTHO05D006446 1.7e-131 473.8 514 52.7
Gohir.A08G038700 Gossypium hirsutum HOM05D005606 ORTHO05D006446 3.8e-131 472.6 514 52.5
PGR044G1587 Punica granatum HOM05D005606 ORTHO05D006446 3.8e-131 472.6 549 50.3
Gohir.D08G048900 Gossypium hirsutum HOM05D005606 ORTHO05D006446 7.2e-130 468.4 514 52.3
MELO3C007099.2 Cucumis melo HOM05D005606 ORTHO05D006446 2.7e-129 466.5 571 47.5
MSTRG.11550 Avicennia marina HOM05D005606 ORTHO05D006446 5.2e-128 462.2 536 51.7
Medtr2g018830 Medicago truncatula HOM05D005606 ORTHO05D006446 1.5e-127 460.7 520 51.0
Glyma.15G091800 Glycine max HOM05D005606 ORTHO05D006446 4.4e-127 459.1 514 52.5
Duzib211G0450 Durio zibethinus HOM05D005606 ORTHO05D006446 4.8e-126 455.7 514 51.0
Ca_00517_v3 Cicer arietinum L. HOM05D005606 ORTHO05D006446 2.4e-125 453.4 523 49.7
Hund06728 Selenicereus undatus HOM05D005606 ORTHO05D006446 2.4e-125 453.4 534 51.3
arahy.Tifrunner.gnm1.ann1.P0FE7Q Arachis hypogaea HOM05D005606 ORTHO05D006446 2.7e-124 449.9 458 53.3
Glyma.13G220600 Glycine max HOM05D005606 ORTHO05D006446 2.7e-124 449.9 515 52.0
Aqoxy3G04204 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 4.5e-124 449.1 536 49.4
Actinidia37370 Actinidia chinensis HOM05D005606 ORTHO05D006446 3.8e-123 446.0 502 52.6
Migut.O00253 Erythranthe guttata HOM05D005606 ORTHO05D006446 2.5e-122 443.4 538 48.0
PSO063G0483 Papaver somniferum HOM05D005606 ORTHO05D006446 2.5e-122 443.4 539 48.8
Oeu023545.1 Olea europaea HOM05D005606 ORTHO05D006446 4.2e-122 442.6 540 49.4
PSO782G3878 Papaver somniferum HOM05D005606 ORTHO05D006446 9.4e-122 441.4 539 48.4
Sc04g0004710 Simmondsia chinensis HOM05D005606 ORTHO05D006446 9.4e-122 441.4 531 50.5
AUR62041591 Chenopodium quinoa HOM05D005606 ORTHO05D006446 1.6e-121 440.7 475 52.6
DCAR_010217 Daucus carota HOM05D005606 ORTHO05D006446 4.7e-121 439.1 531 49.0
Lsat_1_v5_gn_8_221 Lactuca sativa HOM05D005606 ORTHO05D006446 4.7e-121 439.1 530 48.9
CAN.G1631.5 Capsicum annuum HOM05D005606 ORTHO05D006446 3.0e-120 436.4 437 55.1
EL10Ac8g19487 Beta vulgaris HOM05D005606 ORTHO05D006446 1.2e-119 434.5 537 48.8
Oeu038484.2 Olea europaea HOM05D005606 ORTHO05D006446 1.3e-118 431.0 575 44.9
Phvul.006G167500 Phaseolus vulgaris HOM05D005606 ORTHO05D006446 2.3e-115 420.2 388 57.7
VMungo0540G1265 Vigna mungo HOM05D005606 ORTHO05D006446 3.8e-115 419.5 497 51.5
CDE04G0503 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 8.6e-115 418.3 438 50.5
Nitab4.5_0004612g0090 Nicotiana tabacum HOM05D005606 ORTHO05D006446 1.7e-110 404.1 538 47.6
Peaxi162Scf00171g00427 Petunia axillaris HOM05D005606 ORTHO05D006446 1.5e-106 391.0 538 45.4
HanXRQChr05g0141141 Helianthus annuus HOM05D005606 ORTHO05D006446 4.0e-104 382.9 525 44.0
CDE02G0130 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 2.0e-100 370.5 431 46.6
Medtr8g007580 Medicago truncatula HOM05D005606 ORTHO05D006446 5.0e-99 365.9 525 46.1
Psat1g191760 Pisum sativum HOM05D005606 ORTHO05D006446 6.2e-97 359.0 349 54.7
Ah.14g085920 Amaranthus hybridus HOM05D005606 ORTHO05D001302 1.4e-96 357.8 557 43.6
SEGI_11499 Sequoiadendron giganteum HOM05D005606 ORTHO05D006446 9.8e-95 351.7 539 41.7
TAR629G2351 Trochodendron aralioides HOM05D005606 ORTHO05D006446 3.1e-88 330.1 378 51.9
Medtr8g008810 Medicago truncatula HOM05D005606 ORTHO05D006446 5.4e-85 319.3 312 56.4
vmacro17739 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 4.3e-82 309.7 337 52.2
Nitab4.5_0001180g0240 Nicotiana tabacum HOM05D005606 ORTHO05D006446 2.4e-77 293.9 547 37.3
MBI06_g43804_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 3.2e-77 293.5 365 47.9
Zm00001eb250810 Zea mays HOM05D005606 ORTHO05D006446 2.7e-76 290.4 468 42.1
AagrBONN_evm.TU.Sc2ySwM_228.2052 Anthoceros agrestis HOM05D005606 ORTHO05D006446 1.0e-75 288.5 529 38.0
Pp3c23_16320 Physcomitrium patens HOM05D005606 ORTHO05D006446 5.3e-72 276.2 557 35.9
Mapoly0061s0120 Marchantia polymorpha HOM05D005606 ORTHO05D006446 1.2e-71 275.0 569 37.4
Potri.003G213050 Populus trichocarpa HOM05D005606 ORTHO05D006446 1.5e-71 274.6 283 55.1
AUR62042457 Chenopodium quinoa HOM05D005606 ORTHO05D006446 1.0e-67 261.9 319 49.2
SMO358G0536 Selaginella moellendorffii HOM05D005606 ORTHO05D006446 1.3e-67 261.5 473 38.1
Zm00001eb187400 Zea mays HOM05D005606 ORTHO05D006446 6.2e-57 226.1 436 34.9
ATR0824G067 Amborella trichopoda HOM05D005606 ORTHO05D006446 9.0e-56 222.2 379 38.3
TPR.G7652 Trifolium pratense HOM05D005606 ORTHO05D006446 9.0e-56 222.2 215 54.9
MBI06_g39886_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 1.0e-54 218.8 277 46.2
Os02g0684300 Oryza sativa ssp. japonica HOM05D005606 ORTHO05D006446 1.2e-52 211.8 260 47.3
Lj9C350G3 Lonicera japonica HOM05D005606 ORTHO05D006446 4.6e-52 209.9 276 45.7
Hma1.2p1_0403F.1_g145180 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 2.3e-51 207.6 165 62.4
CBR_g11193 Chara braunii HOM05D005606 ORTHO05D006446 3.4e-47 193.7 409 34.7
Haze_05701 Corylus avellana HOM05D005606 ORTHO05D006446 1.1e-45 188.7 260 45.4
unitig_750.g28452 Utricularia gibba HOM05D005606 ORTHO05D006446 3.9e-43 180.3 336 38.7
MBI06_g21907_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 4.3e-42 176.8 262 44.3
Hma1.2p1_0403F.1_g145190 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 7.4e-42 176.0 158 58.2
ATR0879G001 Amborella trichopoda HOM05D005606 ORTHO05D006446 8.5e-38 162.5 196 45.9
ATR0824G212 Amborella trichopoda HOM05D005606 ORTHO05D006446 1.1e-34 152.1 158 50.6
BcaC01g04920 Brassica carinata HOM05D005606 ORTHO05D006446 2.6e-34 151.0 140 65.7
unitig_750.g28451 Utricularia gibba HOM05D006848 ORTHO05D008445 9.1e-32 142.5 155 49.7
vmacro17738 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 5.0e-30 136.7 123 58.5
ECA233G5513 Erigeron canadensis HOM05D005606 ORTHO05D006446 1.1e-29 135.6 185 45.4
TPR.G20455 Trifolium pratense HOM05D005606 ORTHO05D006446 4.2e-29 133.7 117 59.0
Medtr8g008813 Medicago truncatula HOM05D005606 ORTHO05D006446 6.1e-28 129.8 143 51.0
Aqoxy3G04211 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 5.2e-27 126.7 244 39.3
Hma1.2p1_0403F.1_g145170 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 1.2e-18 99.0 191 40.3
Hma1.2p1_2967F.1_g331010 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 4.4e-18 97.1 234 38.0
Medtr0199s0020 Medicago truncatula HOM05D005606 ORTHO05D006446 4.4e-18 97.1 137 45.3
TPR.G26262 Trifolium pratense HOM05D005606 ORTHO05D006446 2.2e-17 94.7 163 40.5
Ah.15g099030 Amaranthus hybridus HOM05D002838 ORTHO05D002114 6.5e-14 83.2 109 49.5
Sabra03G0155900 Salix brachista HOM05D005606 ORTHO05D006446 3.1e-08 64.3 91 40.7
Sabra03G0159100 Salix brachista HOM05D005606 ORTHO05D006446 3.1e-08 64.3 91 40.7


User provided reference genes

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