Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G32370 Arabidopsis lyrata HOM05D003238 ORTHO05D003571 3.8e-31 137.9 88 100.0
AT1G72690 Arabidopsis thaliana HOM05D003238 ORTHO05D003571 2.8e-26 121.7 88 90.9
Carub.0002s1954 Capsella rubella HOM05D003238 ORTHO05D003571 2.5e-19 98.6 91 65.9
Sp5g27750 Schrenkiella parvula HOM05D003238 ORTHO05D003571 8.2e-18 93.6 92 79.3
Thhalv10019375m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 2.0e-16 89.0 96 59.4
CARHR065610 Cardamine hirsuta HOM05D003238 ORTHO05D003571 2.6e-16 88.6 91 72.5
A09p28910 Brassica napus HOM05D003238 ORTHO05D003571 4.5e-16 87.8 92 66.3
BraA09t38454Z Brassica rapa HOM05D003238 ORTHO05D003571 4.5e-16 87.8 92 66.3
C06p34720 Brassica napus HOM05D003238 ORTHO05D003571 7.7e-16 87.0 92 71.7
Aa31LG4G3050 Aethionema arabicum HOM05D003238 ORTHO05D003571 1.1e-11 73.2 81 65.4
THA.LOC109116473 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 7.4e-11 70.5 79 69.6
AUR62009849 Chenopodium quinoa HOM05D003238 ORTHO05D003571 6.3e-10 67.4 79 59.5
Glyma.08G191200 Glycine max HOM05D003238 ORTHO05D003571 6.3e-10 67.4 78 66.7
Gohir.A10G058000 Gossypium hirsutum HOM05D003238 ORTHO05D003571 1.4e-09 66.2 78 65.4
Nn6g35523 Nelumbo nucifera HOM05D003238 ORTHO05D003571 1.4e-09 66.2 79 67.1
QL05p009982 Quercus lobata HOM05D003238 ORTHO05D003571 1.8e-09 65.9 78 65.4
Glyma.07G008200 Glycine max HOM05D003238 ORTHO05D003571 4.1e-09 64.7 78 65.4
Ca_26161_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 5.3e-09 64.3 77 46.8
Gohir.D10G059800 Gossypium hirsutum HOM05D003238 ORTHO05D003571 5.3e-09 64.3 78 64.1
Gorai.011G063800 Gossypium raimondii HOM05D003238 ORTHO05D003571 5.3e-09 64.3 78 64.1
CSS0012761 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 6.9e-09 63.9 79 64.6
CSS0032672 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 6.9e-09 63.9 79 64.6
MELO3C024380.2 Cucumis melo HOM05D003238 ORTHO05D003571 6.9e-09 63.9 79 65.8
TAR624G1148 Trochodendron aralioides HOM05D003238 ORTHO05D003571 6.9e-09 63.9 77 66.2
Lj3g0007714 Lotus japonicus HOM05D003238 ORTHO05D003571 9.1e-09 63.5 77 63.6
Actinidia25242 Actinidia chinensis HOM05D003238 ORTHO05D003571 1.5e-08 62.8 79 63.3
Nitab4.5_0002824g0070 Nicotiana tabacum HOM05D003238 ORTHO05D003571 1.5e-08 62.8 51 66.7
Phvul.010G137200 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 1.5e-08 62.8 75 65.3
PGR102G1556 Punica granatum HOM05D003238 ORTHO05D003571 1.5e-08 62.8 78 62.8
vmacro17137 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 1.5e-08 62.8 79 63.3
CANSAT56G1439 Cannabis sativa HOM05D003238 ORTHO05D003571 2.0e-08 62.4 80 61.2
Haze_25933 Corylus avellana HOM05D003238 ORTHO05D003571 2.0e-08 62.4 77 63.6
DCAR_026391 Daucus carota HOM05D003238 ORTHO05D003571 2.0e-08 62.4 52 61.5
Dinv37898 Davidia involucrata HOM05D003238 ORTHO05D003571 2.0e-08 62.4 53 64.2
CiPaw.01G223100 Carya illinoinensis HOM05D003238 ORTHO05D003571 2.6e-08 62.0 79 64.6
Cfa003563 Carpinus fangiana HOM05D003238 ORTHO05D003571 3.4e-08 61.6 79 63.3
Dinv36782 Davidia involucrata HOM05D003238 ORTHO05D003571 5.9e-08 60.8 53 64.2
Phvul.009G231100 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 7.7e-08 60.5 74 45.9
Actinidia39103 Actinidia chinensis HOM05D003238 ORTHO05D003571 1.0e-07 60.1 53 62.3
Haze_15983 Corylus avellana HOM05D003238 ORTHO05D003571 1.0e-07 60.1 79 63.3
Nitab4.5_0005918g0030 Nicotiana tabacum HOM05D003238 ORTHO05D003571 1.0e-07 60.1 56 58.9
Lj4C292G2 Lonicera japonica HOM05D003238 ORTHO05D003571 1.3e-07 59.7 83 60.2
Nitab4.5_0000255g0290 Nicotiana tabacum HOM05D003238 ORTHO05D003571 1.3e-07 59.7 50 62.0
MD15G1209800 Malus domestica HOM05D003238 ORTHO05D003571 1.7e-07 59.3 77 62.3
Rhsim08G0235200 Rhododendron simsii HOM05D003238 ORTHO05D003571 1.7e-07 59.3 79 62.0
Hma1.2p1_0169F.1_g074900 Hydrangea macrophylla HOM05D003238 ORTHO05D003571 2.2e-07 58.9 78 62.8
Actinidia39710 Actinidia chinensis HOM05D003238 ORTHO05D003571 2.9e-07 58.5 55 60.0
Cfa003064 Carpinus fangiana HOM05D003238 ORTHO05D003571 2.9e-07 58.5 49 61.2
Cc04_g01740 Coffea canephora HOM05D003238 ORTHO05D003571 2.9e-07 58.5 76 65.8
COL.COLO4_30681 Corchorus olitorius HOM05D003238 ORTHO05D003571 3.8e-07 58.2 78 60.3
CsaV3_7G034700 Cucumis sativus L. HOM05D003238 ORTHO05D003571 3.8e-07 58.2 79 62.0
MBI04_g36912_MAGBIO Magnolia biondii HOM05D003238 ORTHO05D003571 5.0e-07 57.8 78 61.5
Medtr2g039890 Medicago truncatula HOM05D003238 ORTHO05D003571 5.0e-07 57.8 77 41.6
Solyc12g008950.2 Solanum lycopersicum HOM05D003238 ORTHO05D003571 5.0e-07 57.8 48 64.6
Peaxi162Scf00498g00436 Petunia axillaris HOM05D003238 ORTHO05D003571 6.5e-07 57.4 47 68.1
Rhsim05G0017200 Rhododendron simsii HOM05D003238 ORTHO05D003571 6.5e-07 57.4 48 62.5
Ciclev10026836m.g Citrus clementina HOM05D003238 ORTHO05D003571 8.5e-07 57.0 49 63.3
Nitab4.5_0009992g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 8.5e-07 57.0 50 62.0
PGSC0003DMG400000275 Solanum tuberosum HOM05D003238 ORTHO05D003571 8.5e-07 57.0 77 62.3
ClCG09G000780 Citrullus lanatus HOM05D003238 ORTHO05D003571 1.4e-06 56.2 79 60.8
Duzib160G0096 Durio zibethinus HOM05D003238 ORTHO05D003571 1.4e-06 56.2 78 60.3
RcHm_v2.0_Chr2g0093691 Rosa chinensis HOM05D003238 ORTHO05D003571 1.4e-06 56.2 79 57.0
Sc15g0000270 Simmondsia chinensis HOM05D003238 ORTHO05D003571 1.4e-06 56.2 84 61.9
Sopen06g022220 Solanum pennellii HOM05D003238 ORTHO05D003571 1.4e-06 56.2 82 58.5
SGA_v2.0_scaffold10G05235 Striga asiatica HOM05D002348 ORTHO05D002512 1.9e-06 55.8 77 41.6
VMungo0720G2789 Vigna mungo HOM05D003238 ORTHO05D003571 1.9e-06 55.8 51 60.8
Ca_23334_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 2.5e-06 55.5 77 58.4
Eucgr.C00871 Eucalyptus grandis HOM05D003238 ORTHO05D003571 2.5e-06 55.5 84 57.1
FAN26G1453 Fragaria x ananassa HOM05D003238 ORTHO05D003571 2.5e-06 55.5 79 55.7
Nitab4.5_0006462g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 2.5e-06 55.5 56 53.6
Sopen12g003880 Solanum pennellii HOM05D003238 ORTHO05D003571 2.5e-06 55.5 50 62.0
Thecc.06G114200 Theobroma cacao HOM05D003238 ORTHO05D003571 2.5e-06 55.5 78 59.0
HPP92_007657 Vanilla planifolia HOM05D003238 ORTHO05D003571 2.5e-06 55.5 50 62.0
Cpa.g.sc25.72 Carica papaya HOM05D003238 ORTHO05D003571 3.2e-06 55.1 51 58.8
FAN26G0800 Fragaria x ananassa HOM05D003238 ORTHO05D003571 3.2e-06 55.1 79 57.0
Atru.chr1.3787 Acer truncatum HOM05D003238 ORTHO05D003571 4.2e-06 54.7 80 58.8
MD02G1082200 Malus domestica HOM05D003238 ORTHO05D003571 4.2e-06 54.7 77 58.4
Oeu017609.1 Olea europaea HOM05D003238 ORTHO05D003571 4.2e-06 54.7 86 52.3
arahy.Tifrunner.gnm1.ann1.57GLQM Arachis hypogaea HOM05D003238 ORTHO05D003571 5.5e-06 54.3 83 39.8
MSTRG.6003 Avicennia marina HOM05D003238 ORTHO05D003571 5.5e-06 54.3 77 58.4
Lalb_Chr04g0263271 Lupinus albus HOM05D003238 ORTHO05D003571 5.5e-06 54.3 77 61.0
Potri.017G119600 Populus trichocarpa HOM05D003238 ORTHO05D003571 9.4e-06 53.5 51 62.7
HPP92_005498 Vanilla planifolia HOM05D003238 ORTHO05D003571 9.4e-06 53.5 56 55.4
GSVIVG01016802001 Vitis vinifera HOM05D003238 ORTHO05D003571 9.4e-06 53.5 79 60.8


User provided reference genes

Program Settings