Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G31350 Arabidopsis lyrata HOM05D005543 ORTHO05D006584 4.9e-108 394.4 194 100.0
AT1G71780 Arabidopsis thaliana HOM05D005543 ORTHO05D006584 4.5e-101 371.3 198 92.4
Thhalv10019179m.g Eutrema salsugineum HOM05D005543 ORTHO05D006584 4.8e-95 351.3 194 87.6
Carub.0002s1854 Capsella rubella HOM05D005543 ORTHO05D006584 6.9e-94 347.4 189 90.5
Sp5g26800 Schrenkiella parvula HOM05D005543 ORTHO05D006584 2.9e-92 342.0 189 87.3
SpUn0095_0030 Schrenkiella parvula HOM05D005543 ORTHO05D006584 2.9e-92 342.0 189 87.3
CARHR291000 Cardamine hirsuta HOM05D005543 ORTHO05D006584 1.8e-89 332.8 195 85.6
A07p30600 Brassica napus HOM05D005543 ORTHO05D006584 3.0e-89 332.0 189 85.7
BraA07t30695Z Brassica rapa HOM05D005543 ORTHO05D006584 3.0e-89 332.0 189 85.7
BolC6t38643H Brassica oleracea HOM05D005543 ORTHO05D006584 2.8e-87 325.5 189 85.2
BcaC08g45757 Brassica carinata HOM05D005543 ORTHO05D006584 6.3e-87 324.3 189 84.7
C06p35380 Brassica napus HOM05D005543 ORTHO05D006584 6.3e-87 324.3 189 84.7
BolC6t39636H Brassica oleracea HOM05D005543 ORTHO05D006584 1.4e-86 323.2 181 85.1
C06p45840 Brassica napus HOM05D005543 ORTHO05D006584 1.8e-86 322.8 181 85.1
Aa31LG4G8860 Aethionema arabicum HOM05D005543 ORTHO05D006584 1.5e-85 319.7 195 78.5
BcaB03g15617 Brassica carinata HOM05D005543 ORTHO05D006584 2.0e-85 319.3 188 83.5
BcaC08g46604 Brassica carinata HOM05D005543 ORTHO05D006584 3.4e-85 318.5 181 84.0
BraA07t31358Z Brassica rapa HOM05D005543 ORTHO05D006584 8.5e-84 313.9 181 82.3
THA.LOC104800097 Tarenaya hassleriana HOM05D005543 ORTHO05D006584 3.2e-83 312.0 180 80.6
A07p37930 Brassica napus HOM05D005543 ORTHO05D006584 6.1e-82 307.8 181 82.3
Haze_17839 Corylus avellana HOM05D005543 ORTHO05D006584 4.0e-65 251.9 184 64.1
TAR625G0687 Trochodendron aralioides HOM05D005543 ORTHO05D006584 4.0e-65 251.9 190 63.7
CANSAT25G2335 Cannabis sativa HOM05D005543 ORTHO05D006584 5.2e-65 251.5 197 59.9
ClCG08G007180 Citrullus lanatus HOM05D005543 ORTHO05D006584 5.2e-65 251.5 193 63.2
MELO3C019959.2 Cucumis melo HOM05D005543 ORTHO05D006584 5.2e-65 251.5 193 63.2
COL.COLO4_13722 Corchorus olitorius HOM05D005543 ORTHO05D006584 2.0e-64 249.6 181 64.1
Gohir.D05G248600 Gossypium hirsutum HOM05D005543 ORTHO05D006584 2.0e-64 249.6 186 63.4
Gorai.009G259700 Gossypium raimondii HOM05D005543 ORTHO05D006584 2.0e-64 249.6 186 63.4
Haze_17833 Corylus avellana HOM05D005543 ORTHO05D006584 7.5e-64 247.7 184 63.0
CiPaw.16G007100 Carya illinoinensis HOM05D005543 ORTHO05D006584 1.3e-63 246.9 195 64.6
Duzib116G0276 Durio zibethinus HOM05D005543 ORTHO05D006584 2.2e-63 246.1 170 66.5
Dinv41020 Davidia involucrata HOM05D005543 ORTHO05D006584 3.7e-63 245.4 174 64.4
Gohir.A05G247100 Gossypium hirsutum HOM05D005543 ORTHO05D006584 4.8e-63 245.0 188 61.7
MD10G1038300 Malus domestica HOM05D005543 ORTHO05D006584 8.3e-63 244.2 190 59.5
TAR381G0628 Trochodendron aralioides HOM05D005543 ORTHO05D006584 1.4e-62 243.4 190 61.6
TWI53G2072 Tripterygium wilfordii HOM05D005543 ORTHO05D006584 1.8e-62 243.0 184 62.0
Thecc.08G164300 Theobroma cacao HOM05D005543 ORTHO05D006584 3.1e-62 242.3 194 60.3
Actinidia17758 Actinidia chinensis HOM05D005543 ORTHO05D006584 4.1e-62 241.9 186 64.0
Nn5g28876 Nelumbo nucifera HOM05D005543 ORTHO05D006584 1.6e-61 240.0 181 62.4
MD05G1036200 Malus domestica HOM05D005543 ORTHO05D006584 2.0e-61 239.6 190 60.0
Eucgr.F04165 Eucalyptus grandis HOM05D005543 ORTHO05D006584 3.5e-61 238.8 195 61.0
Sed0022332 Sechium edule HOM05D005543 ORTHO05D006584 3.5e-61 238.8 189 62.4
Hma1.2p1_0276F.1_g110980 Hydrangea macrophylla HOM05D005543 ORTHO05D006584 5.9e-61 238.0 185 62.2
PGR102G0915 Punica granatum HOM05D005543 ORTHO05D006584 5.9e-61 238.0 180 63.3
arahy.Tifrunner.gnm1.ann1.FFL75L Arachis hypogaea HOM05D005543 ORTHO05D006584 1.0e-60 237.3 197 60.4
RcHm_v2.0_Chr6g0273681 Rosa chinensis HOM05D005543 ORTHO05D006584 1.0e-60 237.3 181 63.5
BcaC08g46607 Brassica carinata HOM05D005543 ORTHO05D006584 1.3e-60 236.9 188 65.4
Lsat_1_v5_gn_9_42581 Lactuca sativa HOM05D005543 ORTHO05D006584 3.8e-60 235.3 179 61.5
Lj2g0006240 Lotus japonicus HOM05D005543 ORTHO05D006584 3.8e-60 235.3 191 59.2
CSS0010673 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 5.0e-60 235.0 163 66.9
Atru.chr13.1972 Acer truncatum HOM05D005543 ORTHO05D006584 6.5e-60 234.6 187 60.4
arahy.Tifrunner.gnm1.ann1.XA0Q13 Arachis hypogaea HOM05D005543 ORTHO05D006584 6.5e-60 234.6 197 60.4
FvH4_2g12791 Fragaria vesca HOM05D005543 ORTHO05D006584 6.5e-60 234.6 186 62.4
Manes.02G185600 Manihot esculenta HOM05D005543 ORTHO05D006584 1.5e-59 233.4 185 61.1
Nitab4.5_0002585g0010 Nicotiana tabacum HOM05D005543 ORTHO05D006584 1.5e-59 233.4 175 61.1
Prupe.8G044500 Prunus persica HOM05D005543 ORTHO05D006584 9.4e-59 230.7 192 56.2
Phvul.004G088200 Phaseolus vulgaris HOM05D005543 ORTHO05D006584 1.2e-58 230.3 182 59.3
Glyma.16G160100 Glycine max HOM05D005543 ORTHO05D006584 1.6e-58 229.9 196 59.2
PSO541G4578 Papaver somniferum HOM05D005543 ORTHO05D006584 1.6e-58 229.9 181 60.8
Ca_04656_v3 Cicer arietinum L. HOM05D005543 ORTHO05D006584 2.1e-58 229.6 180 60.0
Potri.002G062300 Populus trichocarpa HOM05D005543 ORTHO05D006584 2.7e-58 229.2 160 68.1
FAN15G0123 Fragaria x ananassa HOM05D005543 ORTHO05D006584 3.6e-58 228.8 181 61.3
FAN24G1753 Fragaria x ananassa HOM05D005543 ORTHO05D006584 3.6e-58 228.8 180 61.1
Sc20g0003140 Simmondsia chinensis HOM05D005543 ORTHO05D006584 8.0e-58 227.6 185 58.4
Lj7A386T90 Lonicera japonica HOM05D005543 ORTHO05D006584 1.0e-57 227.3 179 59.2
VMungo0464G0571 Vigna mungo HOM05D005543 ORTHO05D006584 1.0e-57 227.3 182 59.3
Peaxi162Scf00226g00217 Petunia axillaris HOM05D005543 ORTHO05D006584 2.3e-57 226.1 177 61.0
SalBow6G1236 Salvia bowleyana HOM05D005543 ORTHO05D006584 3.0e-57 225.7 181 59.1
Solyc04g072120.2 Solanum lycopersicum HOM05D005543 ORTHO05D006584 4.0e-57 225.3 177 59.9
Cc10_g06390 Coffea canephora HOM05D005543 ORTHO05D006584 5.2e-57 224.9 191 57.6
HanXRQChr11g0320551 Helianthus annuus HOM05D005543 ORTHO05D006584 5.2e-57 224.9 189 58.2
Medtr6g034680 Medicago truncatula HOM05D005543 ORTHO05D006584 5.2e-57 224.9 185 60.5
Psat0s2687g0120 Pisum sativum HOM05D005543 ORTHO05D006584 6.8e-57 224.6 157 66.2
Sabra02G0050300 Salix brachista HOM05D005543 ORTHO05D006584 6.8e-57 224.6 158 66.5
Sopen04g028290 Solanum pennellii HOM05D005543 ORTHO05D006584 6.8e-57 224.6 177 59.3
SGA_v2.0_scaffold166G38393 Striga asiatica HOM05D005543 ORTHO05D006584 1.2e-56 223.8 180 59.4
ECA232G2646 Erigeron canadensis HOM05D005543 ORTHO05D006584 1.5e-56 223.4 183 60.7
PSO675G1818 Papaver somniferum HOM05D005543 ORTHO05D006584 1.5e-56 223.4 181 59.7
PGSC0003DMG400031139 Solanum tuberosum HOM05D005543 ORTHO05D006584 7.5e-56 221.1 177 58.8
Ciclev10002600m.g Citrus clementina HOM05D005543 ORTHO05D006584 9.8e-56 220.7 178 59.6
Lalb_Chr06g0161821 Lupinus albus HOM05D005543 ORTHO05D006584 1.3e-55 220.3 181 59.1
MSTRG.22116 Avicennia marina HOM05D005543 ORTHO05D006584 1.7e-55 219.9 190 56.3
Sopen12g029440 Solanum pennellii HOM05D005543 ORTHO05D006584 2.8e-55 219.2 178 58.4
Nitab4.5_0001000g0150 Nicotiana tabacum HOM05D005543 ORTHO05D006584 3.7e-55 218.8 179 56.4
Ah.05g168360 Amaranthus hybridus HOM05D005543 ORTHO05D006584 4.9e-55 218.4 183 54.6
Nitab4.5_0000433g0010 Nicotiana tabacum HOM05D005543 ORTHO05D006584 6.3e-55 218.0 179 56.4
Nitab4.5_0004541g0020 Nicotiana tabacum HOM05D005543 ORTHO05D006584 6.3e-55 218.0 175 59.4
DCAR_019968 Daucus carota HOM05D005543 ORTHO05D006584 8.3e-55 217.6 192 56.8
Solyc12g056760.2 Solanum lycopersicum HOM05D005543 ORTHO05D006584 8.3e-55 217.6 178 57.9
Sabra05G0151400 Salix brachista HOM05D005543 ORTHO05D006584 1.1e-54 217.2 183 59.6
Migut.N02941 Erythranthe guttata HOM05D005543 ORTHO05D006584 1.2e-53 213.8 182 56.6
GSVIVG01013678001 Vitis vinifera HOM05D005543 ORTHO05D006584 1.6e-53 213.4 181 58.6
PGSC0003DMG400016956 Solanum tuberosum HOM05D005543 ORTHO05D006584 2.7e-53 212.6 181 56.4
HPP92_007671 Vanilla planifolia HOM05D005543 ORTHO05D006584 2.7e-53 212.6 189 52.9
Peaxi162Scf00160g01739 Petunia axillaris HOM05D005543 ORTHO05D006584 4.5e-53 211.8 152 62.5
vmacro21199 Vaccinium macrocarpon HOM05D005543 ORTHO05D006584 1.0e-52 210.7 211 51.7
Lj5g0027482 Lotus japonicus HOM05D005543 ORTHO05D006584 1.3e-52 210.3 165 60.6
EL10Ac1g01633 Beta vulgaris HOM05D005543 ORTHO05D006584 3.8e-52 208.8 200 53.5
Hund17502 Selenicereus undatus HOM05D005543 ORTHO05D006584 2.5e-51 206.1 211 54.0
CDE05G2658 Ceratophyllum demersum HOM05D005543 ORTHO05D006584 4.3e-51 205.3 177 55.9
AUR62034923 Chenopodium quinoa HOM05D005543 ORTHO05D006584 4.3e-51 205.3 194 51.0
Aqoxy6G00453 Aquilegia oxysepala HOM05D005543 ORTHO05D006584 5.6e-51 204.9 149 60.4
AUR62026611 Chenopodium quinoa HOM05D005543 ORTHO05D006584 2.8e-50 202.6 206 49.5
DCAR_009611 Daucus carota HOM05D005543 ORTHO05D006584 6.1e-50 201.4 197 54.8
unitig_578.g16221 Utricularia gibba HOM05D005543 ORTHO05D006584 1.4e-49 200.3 155 61.9
Nn1g05159 Nelumbo nucifera HOM05D005543 ORTHO05D006584 6.8e-49 198.0 182 52.2
Psat6g189440 Pisum sativum HOM05D005543 ORTHO05D006584 1.1e-46 190.7 159 56.6
Os01g0715800 Oryza sativa ssp. japonica HOM05D005543 ORTHO05D006584 1.6e-45 186.8 161 55.3
TPR.G17022 Trifolium pratense HOM05D005543 ORTHO05D006584 2.7e-45 186.0 181 50.8
Medtr1g097400 Medicago truncatula HOM05D005543 ORTHO05D006584 4.7e-42 175.3 181 50.8
Ca_10645_v3 Cicer arietinum L. HOM05D005543 ORTHO05D006584 3.1e-41 172.6 183 47.5
Lj4A705G47 Lonicera japonica HOM05D005543 ORTHO05D006584 3.7e-39 165.6 145 55.9
SEGI_03773 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 8.1e-34 147.9 155 44.5
SEGI_04047 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 8.1e-34 147.9 155 44.5
CsaV3_6G004850 Cucumis sativus L. HOM05D005543 ORTHO05D006584 1.4e-33 147.1 123 59.3
CSS0045165 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 3.1e-33 146.0 112 60.7
Rhsim06G0093300 Rhododendron simsii HOM05D005543 ORTHO05D006584 4.0e-33 145.6 109 66.1
Cpa.g.sc26.124 Carica papaya HOM05D005543 ORTHO05D006584 5.2e-33 145.2 120 61.7
Oeu022062.1 Olea europaea HOM05D005543 ORTHO05D006584 5.2e-33 145.2 111 58.6
SEGI_37275 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 6.8e-33 144.8 150 44.0
FAN27G1145 Fragaria x ananassa HOM05D005543 ORTHO05D006584 2.9e-31 139.4 123 57.7
Zm00001eb121890 Zea mays HOM05D005543 ORTHO05D006584 2.1e-29 133.3 156 41.0
QL02p036789 Quercus lobata HOM05D005543 ORTHO05D006584 1.9e-27 126.7 128 54.7
QL02p036792 Quercus lobata HOM05D005543 ORTHO05D006584 5.1e-20 102.1 70 61.4
Mapoly0005s0207 Marchantia polymorpha HOM05D005543 ORTHO05D006584 3.3e-19 99.4 159 34.0
Oeu022061.1 Olea europaea HOM05D005543 ORTHO05D006584 9.6e-19 97.8 74 59.5
TPR.G22092 Trifolium pratense HOM05D005543 ORTHO05D006584 1.4e-17 94.0 71 60.6
SGA_v2.0_scaffold43G16323 Striga asiatica HOM05D005543 ORTHO05D006584 7.6e-16 88.2 69 55.1
CSS0016395 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 9.9e-16 87.8 67 58.2
SEGI_08036 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 9.9e-16 87.8 107 41.1
Sopen04g028180 Solanum pennellii HOM05D000002 ORTHO05D000047 6.4e-15 85.1 67 56.7
Pp3c1_40160 Physcomitrium patens HOM05D005543 ORTHO05D006584 2.1e-13 80.1 144 28.5
VMungo1127G1001 Vigna mungo HOM05D005543 ORTHO05D006584 6.0e-13 78.6 73 56.2
SGA_v2.0_scaffold130G34341 Striga asiatica HOM05D005543 ORTHO05D006584 3.3e-11 72.8 45 68.9
Cfa018258 Carpinus fangiana HOM05D005543 ORTHO05D006584 1.6e-10 70.5 71 56.3
Pp3c17_20130 Physcomitrium patens HOM05D005543 ORTHO05D006584 8.1e-10 68.2 143 23.1


User provided reference genes

Program Settings