Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G31310 Arabidopsis lyrata HOM05D007964 ORTHO05D010090 1.7e-72 275.8 132 100.0
AT1G71740 Arabidopsis thaliana HOM05D007964 ORTHO05D010090 4.8e-62 241.1 132 88.6
Carub.0002s1850 Capsella rubella HOM05D007964 ORTHO05D010090 6.7e-56 220.7 132 81.8
CARHR291050 Cardamine hirsuta HOM05D007964 ORTHO05D010090 9.6e-55 216.9 132 77.3
Sp5g26770 Schrenkiella parvula HOM05D007964 ORTHO05D010090 3.1e-53 211.8 139 76.3
Aa31LG4G8900 Aethionema arabicum HOM05D007964 ORTHO05D010090 1.5e-52 209.5 139 72.7
BolC6t39631H Brassica oleracea HOM05D007964 ORTHO05D010090 1.6e-49 199.5 136 73.5
BraA07t31354Z Brassica rapa HOM05D007964 ORTHO05D010090 7.9e-49 197.2 135 72.6
A07p37890 Brassica napus HOM05D007964 ORTHO05D010090 1.3e-48 196.4 136 73.5
Thhalv10019796m.g Eutrema salsugineum HOM05D007964 ORTHO05D010090 1.8e-48 196.1 130 74.6
BcaC08g46600 Brassica carinata HOM05D007964 ORTHO05D010090 2.3e-48 195.7 135 71.1
C06p45790 Brassica napus HOM05D007964 ORTHO05D010090 2.3e-48 195.7 135 71.1
THA.LOC104810508 Tarenaya hassleriana HOM05D007964 ORTHO05D010090 9.3e-34 147.1 131 60.3
Manes.02G184300 Manihot esculenta HOM05D007964 ORTHO05D010090 9.4e-26 120.6 125 51.2
Ciclev10003908m.g Citrus clementina HOM05D007964 ORTHO05D010090 3.3e-23 112.1 133 48.1
Potri.005G198200 Populus trichocarpa HOM05D007964 ORTHO05D010090 3.3e-23 112.1 106 54.7
Ca_04662_v3 Cicer arietinum L. HOM05D007964 ORTHO05D010090 6.3e-22 107.8 127 46.5
Medtr6g039830 Medicago truncatula HOM05D007964 ORTHO05D010090 8.2e-22 107.5 127 48.0
MELO3C019968.2 Cucumis melo HOM05D007964 ORTHO05D010090 1.4e-21 106.7 130 45.4
Sed0027049 Sechium edule HOM05D007964 ORTHO05D010090 1.8e-21 106.3 136 44.9
QL02p037092 Quercus lobata HOM05D007964 ORTHO05D010090 2.4e-21 105.9 125 44.8
Cfa018267 Carpinus fangiana HOM05D007964 ORTHO05D010090 4.1e-21 105.1 128 47.7
Sabra05G0151100 Salix brachista HOM05D007964 ORTHO05D010090 4.1e-21 105.1 106 52.8
Atru.chr13.1988 Acer truncatum HOM05D007964 ORTHO05D010090 5.3e-21 104.8 130 46.9
Glyma.02G078400 Glycine max HOM05D007964 ORTHO05D010090 5.3e-21 104.8 115 50.4
Glyma.16G161400 Glycine max HOM05D007964 ORTHO05D010090 5.3e-21 104.8 115 47.8
CsaV3_6G004920 Cucumis sativus L. HOM05D007964 ORTHO05D010090 6.9e-21 104.4 130 44.6
Psat0s1172g0240 Pisum sativum HOM05D007964 ORTHO05D010090 9.1e-21 104.0 127 46.5
SalBow6G4546 Salvia bowleyana HOM05D007964 ORTHO05D010090 1.2e-20 103.6 135 45.9
Thecc.08G162400 Theobroma cacao HOM05D007964 ORTHO05D010090 1.2e-20 103.6 139 41.7
Phvul.004G087600 Phaseolus vulgaris HOM05D007964 ORTHO05D010090 2.0e-20 102.8 115 47.0
QL02p036563 Quercus lobata HOM05D007964 ORTHO05D010090 2.0e-20 102.8 125 44.0
Haze_17821 Corylus avellana HOM05D007964 ORTHO05D010090 3.4e-20 102.1 127 44.9
Sed0009872 Sechium edule HOM05D007964 ORTHO05D010090 3.4e-20 102.1 130 43.1
EL10Ac1g01623 Beta vulgaris HOM05D007964 ORTHO05D010090 5.9e-20 101.3 113 49.6
ClCG08G007250 Citrullus lanatus HOM05D007964 ORTHO05D010090 7.7e-20 100.9 136 42.6
COL.COLO4_29112 Corchorus olitorius HOM05D007964 ORTHO05D010090 8.5e-19 97.4 114 48.2
AUR62026621 Chenopodium quinoa HOM05D007964 ORTHO05D010090 1.1e-18 97.1 102 50.0
AUR62034908 Chenopodium quinoa HOM05D007964 ORTHO05D010090 1.1e-18 97.1 102 50.0
Gohir.A06G112000 Gossypium hirsutum HOM05D007964 ORTHO05D010090 1.1e-18 97.1 137 44.5
CiPaw.15G011700 Carya illinoinensis HOM05D007964 ORTHO05D010090 2.5e-18 95.9 123 45.5
Lalb_Chr19g0130001 Lupinus albus HOM05D007964 ORTHO05D010090 7.2e-18 94.4 123 44.7
Migut.O00757 Erythranthe guttata HOM05D007964 ORTHO05D010090 1.6e-17 93.2 110 50.0
PGR042G2516 Punica granatum HOM05D007964 ORTHO05D010090 1.6e-17 93.2 123 46.3
Migut.N02947 Erythranthe guttata HOM05D007964 ORTHO05D010090 2.1e-17 92.8 110 50.0
FAN20G1166 Fragaria x ananassa HOM05D007964 ORTHO05D010090 4.7e-17 91.7 126 46.0
FvH4_2g12880 Fragaria vesca HOM05D007964 ORTHO05D010090 6.1e-17 91.3 126 46.0
FAN24G2710 Fragaria x ananassa HOM05D007964 ORTHO05D010090 6.1e-17 91.3 126 46.0
Gorai.010G134000 Gossypium raimondii HOM05D007964 ORTHO05D010090 8.0e-17 90.9 137 42.3
Ah.05g167820 Amaranthus hybridus HOM05D007964 ORTHO05D010090 1.0e-16 90.5 106 50.0
Oeu046067.1 Olea europaea HOM05D007964 ORTHO05D010090 1.0e-16 90.5 106 49.1
SGA_v2.0_scaffold54G19690 Striga asiatica HOM05D007964 ORTHO05D010090 1.0e-16 90.5 106 48.1
Lsat_1_v5_gn_6_100061 Lactuca sativa HOM05D007964 ORTHO05D010090 2.3e-16 89.4 106 50.0
RcHm_v2.0_Chr6g0273981 Rosa chinensis HOM05D007964 ORTHO05D010090 2.3e-16 89.4 131 44.3
Gohir.D06G116200 Gossypium hirsutum HOM05D007964 ORTHO05D010090 5.2e-16 88.2 137 41.6
Prupe.8G043200 Prunus persica HOM05D007964 ORTHO05D010090 6.7e-16 87.8 117 44.4
Potri.002G062950 Populus trichocarpa HOM05D007964 ORTHO05D010090 8.8e-16 87.4 126 42.9
CSS0006430 Camellia sinensis var. sinensis HOM05D007964 ORTHO05D010090 2.0e-15 86.3 127 40.2
CSS0037867 Camellia sinensis var. sinensis HOM05D007964 ORTHO05D010090 2.0e-15 86.3 127 40.2
Hma1.2p1_0678F.1_g202130 Hydrangea macrophylla HOM05D007964 ORTHO05D010090 3.3e-15 85.5 115 41.7
DCAR_001195 Daucus carota HOM05D007964 ORTHO05D010090 4.4e-15 85.1 107 45.8
FAN27G1192 Fragaria x ananassa HOM05D007964 ORTHO05D010090 9.7e-15 84.0 126 44.4
Nitab4.5_0003178g0050 Nicotiana tabacum HOM05D007964 ORTHO05D010090 4.8e-14 81.6 106 46.2
Nn5g28859 Nelumbo nucifera HOM05D007964 ORTHO05D010090 6.3e-14 81.3 127 40.9
CANSAT25G1394 Cannabis sativa HOM05D007964 ORTHO05D010090 1.1e-13 80.5 122 41.0
Peaxi162Scf00360g00092 Petunia axillaris HOM05D007964 ORTHO05D010090 1.1e-13 80.5 139 39.6
CAN.G1183.20 Capsicum annuum HOM05D007964 ORTHO05D010090 4.1e-13 78.6 121 41.3
Nitab4.5_0003443g0080 Nicotiana tabacum HOM05D007964 ORTHO05D010090 4.1e-13 78.6 104 45.2
PGSC0003DMG400025075 Solanum tuberosum HOM05D007964 ORTHO05D010090 4.1e-13 78.6 131 39.7
Rhsim06G0092800 Rhododendron simsii HOM05D007964 ORTHO05D010090 7.0e-13 77.8 122 42.6
Aqoxy6G00437 Aquilegia oxysepala HOM05D007964 ORTHO05D010090 2.0e-12 76.3 103 38.8
CSS0037942 Camellia sinensis var. sinensis HOM05D007964 ORTHO05D010090 8.5e-11 70.9 60 56.7
Sopen04g028110 Solanum pennellii HOM05D007964 ORTHO05D010090 8.5e-11 70.9 102 43.1
Os02g0210900 Oryza sativa ssp. japonica HOM05D007964 ORTHO05D010090 1.4e-08 63.5 106 42.5
Nn3g17698 Nelumbo nucifera HOM05D002803 ORTHO05D003089 5.7e-07 58.2 41 63.4
Zm00001eb205370 Zea mays HOM05D007964 ORTHO05D010090 5.7e-07 58.2 34 70.6
HanXRQChr16g0528841 Helianthus annuus HOM05D002803 ORTHO05D003089 2.2e-06 56.2 43 62.8
ATR1120G014 Amborella trichopoda HOM05D007964 ORTHO05D010090 2.8e-06 55.8 32 71.9
TAR629G1495 Trochodendron aralioides HOM05D002803 ORTHO05D003089 2.8e-06 55.8 30 76.7
MSTRG.813 Avicennia marina HOM05D002803 ORTHO05D003089 3.7e-06 55.5 83 37.3
PSO724G0959 Papaver somniferum HOM05D002803 ORTHO05D003089 3.7e-06 55.5 30 73.3
ECA234G0469 Erigeron canadensis HOM05D002803 ORTHO05D003089 4.8e-06 55.1 34 70.6
Nn4g23707 Nelumbo nucifera HOM05D002803 ORTHO05D003089 6.3e-06 54.7 42 59.5
Nn4g23709 Nelumbo nucifera HOM05D002803 ORTHO05D003089 6.3e-06 54.7 42 59.5
Potri.010G130600 Populus trichocarpa HOM05D002803 ORTHO05D003089 6.3e-06 54.7 56 44.6
Oeu033581.1 Olea europaea HOM05D002803 ORTHO05D003089 8.2e-06 54.3 57 45.6
Zm00001eb314570 Zea mays HOM05D007501 ORTHO05D009528 8.2e-06 54.3 39 59.0


User provided reference genes

Program Settings