Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G31250 Arabidopsis lyrata HOM05D005921 ORTHO05D007374 1.6e-296 1021.9 492 100.0
AT1G71696 Arabidopsis thaliana HOM05D005921 ORTHO05D007374 2.2e-282 974.9 492 94.9
Carub.0002s1845 Capsella rubella HOM05D005921 ORTHO05D007374 3.3e-273 944.5 492 90.9
Sp5g26720 Schrenkiella parvula HOM05D005921 ORTHO05D007374 4.1e-268 927.5 492 89.6
BcaB05g24658 Brassica carinata HOM05D005921 ORTHO05D007374 5.6e-265 917.1 493 90.1
Aa31LG4G8950 Aethionema arabicum HOM05D005921 ORTHO05D007374 6.8e-263 910.2 490 87.1
A02p17260 Brassica napus HOM05D005921 ORTHO05D007374 6.4e-261 903.7 493 88.4
BcaC03g15284 Brassica carinata HOM05D005921 ORTHO05D007374 8.3e-261 903.3 493 88.6
C02p28900 Brassica napus HOM05D005921 ORTHO05D007374 2.3e-258 895.2 509 86.1
Thhalv10018610m.g Eutrema salsugineum HOM05D005921 ORTHO05D007374 3.8e-237 824.7 427 92.0
CARHR291100 Cardamine hirsuta HOM05D005921 ORTHO05D007374 3.8e-221 771.5 401 90.8
Thecc.08G159700 Theobroma cacao HOM05D005921 ORTHO05D007374 1.8e-199 699.5 485 66.8
GSVIVG01001409001 Vitis vinifera HOM05D005921 ORTHO05D007374 1.5e-193 679.9 492 65.7
Gorai.009G286300 Gossypium raimondii HOM05D005921 ORTHO05D007374 2.9e-189 665.6 479 66.4
Atru.chr13.2001 Acer truncatum HOM05D005921 ORTHO05D007374 2.5e-188 662.5 473 65.8
Gohir.A05G270866 Gossypium hirsutum HOM05D005921 ORTHO05D007374 7.2e-188 661.0 453 68.4
Eucgr.F04188 Eucalyptus grandis HOM05D005921 ORTHO05D007374 2.1e-187 659.4 492 64.2
Duzib116G0900 Durio zibethinus HOM05D005921 ORTHO05D007374 2.7e-187 659.1 427 70.3
Cfa018279 Carpinus fangiana HOM05D005921 ORTHO05D007374 3.6e-187 658.7 450 69.3
COL.COLO4_13778 Corchorus olitorius HOM05D005921 ORTHO05D007374 4.7e-187 658.3 528 59.7
Potri.005G197000 Populus trichocarpa HOM05D005921 ORTHO05D007374 2.3e-186 656.0 494 65.0
Lj5g0014499 Lotus japonicus HOM05D005921 ORTHO05D007374 2.6e-185 652.5 495 63.0
RcHm_v2.0_Chr6g0274201 Rosa chinensis HOM05D005921 ORTHO05D007374 5.7e-185 651.4 490 65.3
Manes.02G183400 Manihot esculenta HOM05D005921 ORTHO05D007374 4.8e-184 648.3 481 64.0
Hma1.2p1_0358F.1_g134840 Hydrangea macrophylla HOM05D005921 ORTHO05D007374 1.4e-183 646.7 491 63.1
Medtr1g097955 Medicago truncatula HOM05D005921 ORTHO05D007374 3.1e-183 645.6 490 62.4
Rhsim11G0087800 Rhododendron simsii HOM05D005921 ORTHO05D007374 3.1e-183 645.6 478 64.9
Ca_10662_v3 Cicer arietinum L. HOM05D005921 ORTHO05D007374 4.5e-182 641.7 475 63.2
Prupe.8G040700 Prunus persica HOM05D005921 ORTHO05D007374 4.5e-182 641.7 474 64.8
TPR.G17011 Trifolium pratense HOM05D005921 ORTHO05D007374 4.5e-182 641.7 489 62.2
ClCG08G007340 Citrullus lanatus HOM05D005921 ORTHO05D007374 7.7e-182 641.0 474 64.3
TWI32G1095 Tripterygium wilfordii HOM05D005921 ORTHO05D007374 2.2e-181 639.4 510 61.0
CsaV3_6G004990 Cucumis sativus L. HOM05D005921 ORTHO05D007374 2.9e-181 639.0 482 63.7
MD05G1033700 Malus domestica HOM05D005921 ORTHO05D007374 2.9e-181 639.0 476 65.5
CANSAT25G0895 Cannabis sativa HOM05D005921 ORTHO05D007374 5.0e-181 638.3 478 63.2
PGR044G0568 Punica granatum HOM05D005921 ORTHO05D007374 5.0e-181 638.3 468 63.9
Glyma.10G221400 Glycine max HOM05D005921 ORTHO05D007374 3.2e-180 635.6 491 61.5
Psat0s899g0040 Pisum sativum HOM05D005921 ORTHO05D007374 4.2e-180 635.2 467 63.8
Ciclev10003457m.g Citrus clementina HOM05D005921 ORTHO05D007374 1.2e-179 633.6 430 67.7
CiPaw.15G012300 Carya illinoinensis HOM05D005921 ORTHO05D007374 8.0e-179 630.9 475 64.6
Lalb_Chr06g0161731 Lupinus albus HOM05D005921 ORTHO05D007374 8.8e-178 627.5 438 66.9
Sopen04g027990 Solanum pennellii HOM05D005921 ORTHO05D007374 1.1e-177 627.1 497 62.2
Eucgr.L02800 Eucalyptus grandis HOM05D005921 ORTHO05D007374 2.0e-177 626.3 520 59.6
VMungo0720G0456 Vigna mungo HOM05D005921 ORTHO05D007374 3.3e-177 625.5 441 66.7
Glyma.20G170200 Glycine max HOM05D005921 ORTHO05D007374 4.4e-177 625.2 474 61.6
Solyc04g072010.3 Solanum lycopersicum HOM05D005921 ORTHO05D007374 7.4e-177 624.4 497 61.6
Cc10_g15280 Coffea canephora HOM05D005921 ORTHO05D007374 1.7e-176 623.2 466 63.7
arahy.Tifrunner.gnm1.ann1.9JVG50 Arachis hypogaea HOM05D005921 ORTHO05D007374 2.8e-176 622.5 495 61.2
Lalb_Chr02g0141581 Lupinus albus HOM05D005921 ORTHO05D007374 2.8e-176 622.5 439 65.6
vmacro01494 Vaccinium macrocarpon HOM05D005921 ORTHO05D007374 4.8e-176 621.7 461 63.6
arahy.Tifrunner.gnm1.ann1.TV90AE Arachis hypogaea HOM05D005921 ORTHO05D007374 1.1e-175 620.5 445 65.4
HanXRQChr02g0042431 Helianthus annuus HOM05D005921 ORTHO05D007374 4.1e-175 618.6 484 61.2
EL10Ac1g01606 Beta vulgaris HOM05D005921 ORTHO05D007374 5.3e-175 618.2 486 60.7
Sed0007537 Sechium edule HOM05D005921 ORTHO05D007374 2.0e-174 616.3 485 62.1
CAN.G1252.3 Capsicum annuum HOM05D005921 ORTHO05D007374 5.9e-174 614.8 477 62.3
TAR381G0629 Trochodendron aralioides HOM05D005921 ORTHO05D007374 1.0e-173 614.0 475 61.7
PSO675G2388 Papaver somniferum HOM05D005921 ORTHO05D007374 1.7e-173 613.2 497 60.0
Migut.N02950 Erythranthe guttata HOM05D005921 ORTHO05D007374 2.9e-173 612.5 458 62.9
CSS0006668 Camellia sinensis var. sinensis HOM05D005921 ORTHO05D007374 6.5e-173 611.3 436 65.4
Aqoxy6G00427 Aquilegia oxysepala HOM05D005921 ORTHO05D007374 3.2e-172 609.0 481 61.1
MBI01_g34168_MAGBIO Magnolia biondii HOM05D005921 ORTHO05D007374 3.2e-172 609.0 481 60.5
FAN24G0054 Fragaria x ananassa HOM05D005921 ORTHO05D007374 5.5e-172 608.2 480 62.3
FvH4_2g13020 Fragaria vesca HOM05D005921 ORTHO05D007374 2.7e-171 605.9 480 62.3
Gohir.D05G273101 Gossypium hirsutum HOM05D005921 ORTHO05D007374 1.4e-170 603.6 479 62.0
Lsat_1_v5_gn_1_5181 Lactuca sativa HOM05D005921 ORTHO05D007374 6.7e-170 601.3 478 59.6
CDE04G2034 Ceratophyllum demersum HOM05D005921 ORTHO05D007374 5.7e-169 598.2 478 57.9
Sc02g0003820 Simmondsia chinensis HOM05D005921 ORTHO05D007374 1.3e-168 597.0 378 72.2
Peaxi162Scf00360g00056 Petunia axillaris HOM05D005921 ORTHO05D007374 1.8e-167 593.2 476 61.1
FAN27G2380 Fragaria x ananassa HOM05D005921 ORTHO05D007374 2.5e-164 582.8 510 56.9
Ah.05g168190 Amaranthus hybridus HOM05D005921 ORTHO05D007374 3.2e-164 582.4 405 67.4
Phvul.007G083600 Phaseolus vulgaris HOM05D005921 ORTHO05D007374 7.2e-164 581.3 405 66.2
Hund26678 Selenicereus undatus HOM05D005921 ORTHO05D007374 3.6e-163 578.9 496 56.9
MSTRG.24492 Avicennia marina HOM05D005921 ORTHO05D007374 6.1e-163 578.2 478 59.0
SalBow6G1744 Salvia bowleyana HOM05D005921 ORTHO05D007374 1.8e-162 576.6 479 57.6
unitig_578.g16229 Utricularia gibba HOM05D005921 ORTHO05D007374 6.8e-162 574.7 419 64.2
ECA247G3881 Erigeron canadensis HOM05D005921 ORTHO05D007374 2.0e-161 573.2 395 67.1
MSTRG.22109 Avicennia marina HOM05D005921 ORTHO05D007374 1.3e-160 570.5 480 57.9
MELO3C019977.2 Cucumis melo HOM05D005921 ORTHO05D007374 1.3e-160 570.5 381 69.8
Lj7A383T42 Lonicera japonica HOM05D005921 ORTHO05D007374 7.2e-156 554.7 439 61.5
Lj4A704G63 Lonicera japonica HOM05D005921 ORTHO05D007374 8.0e-155 551.2 399 64.7
FAN15G3525 Fragaria x ananassa HOM05D005921 ORTHO05D007374 2.3e-154 549.7 504 56.3
AUR62034891 Chenopodium quinoa HOM05D005921 ORTHO05D007374 2.0e-153 546.6 389 65.3
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 4.4e-153 545.4 401 62.8
Zm00001eb377250 Zea mays HOM05D005921 ORTHO05D007374 1.4e-151 540.4 466 55.6
Nn5g28835 Nelumbo nucifera HOM05D005921 ORTHO05D007374 1.8e-151 540.0 472 55.9
Sabra05G0149900 Salix brachista HOM05D005921 ORTHO05D007374 4.7e-147 525.4 479 55.9
Hma1.2p1_0358F.1_g134830 Hydrangea macrophylla HOM05D005921 ORTHO05D007374 1.3e-141 507.3 357 66.4
FAN20G2564 Fragaria x ananassa HOM05D005921 ORTHO05D007374 2.5e-140 503.1 504 53.8
SGA_v2.0_scaffold54G19682 Striga asiatica HOM05D005921 ORTHO05D007374 2.1e-139 500.0 519 51.3
AUR62026635 Chenopodium quinoa HOM05D005921 ORTHO05D007374 1.5e-137 493.8 394 60.9
DCAR_001188 Daucus carota HOM05D005921 ORTHO05D007374 8.3e-136 488.0 309 69.6
Nitab4.5_0013157g0020 Nicotiana tabacum HOM05D005921 ORTHO05D007374 1.2e-131 474.2 360 62.5
Nitab4.5_0000099g0240 Nicotiana tabacum HOM05D005921 ORTHO05D007374 2.8e-131 473.0 542 48.7
SMO116G0063 Selaginella moellendorffii HOM05D005921 ORTHO05D007374 4.7e-131 472.2 423 54.4
Mapoly0096s0032 Marchantia polymorpha HOM05D005921 ORTHO05D007374 8.1e-131 471.5 365 58.4
Cpa.g.sc26.80 Carica papaya HOM05D005921 ORTHO05D007374 1.5e-129 467.2 327 66.4
BolC2t08937H Brassica oleracea HOM05D005921 ORTHO05D007374 8.3e-128 461.5 243 89.7
BraA02t06774Z Brassica rapa HOM05D005921 ORTHO05D007374 4.1e-127 459.1 243 88.9
AagrBONN_evm.TU.Sc2ySwM_344.3190 Anthoceros agrestis HOM05D005921 ORTHO05D007374 2.4e-122 443.4 398 51.5
Pp3c16_14030 Physcomitrium patens HOM05D005921 ORTHO05D007374 4.4e-121 439.1 334 59.0
HPP92_000681 Vanilla planifolia HOM05D005921 ORTHO05D007374 1.4e-119 434.1 374 57.0
Ciclev10003529m.g Citrus clementina HOM05D005921 ORTHO05D007374 8.7e-117 424.9 382 56.8
Haze_17806 Corylus avellana HOM05D005921 ORTHO05D007374 6.6e-109 398.7 268 70.5
BolC2t08936H Brassica oleracea HOM05D005921 ORTHO05D007374 2.0e-105 387.1 241 82.2
BraA02t06773Z Brassica rapa HOM05D005921 ORTHO05D007374 3.4e-105 386.3 234 83.8
QL02p037958 Quercus lobata HOM05D005921 ORTHO05D007374 3.3e-92 343.2 239 68.6
Pp3c6_12100 Physcomitrium patens HOM05D005921 ORTHO05D007374 1.6e-91 340.9 370 46.8
QL02p037460 Quercus lobata HOM05D005921 ORTHO05D007374 1.6e-91 340.9 239 68.2
CBR_g30849 Chara braunii HOM05D005921 ORTHO05D007374 2.8e-91 340.1 373 45.0
HPP92_000638 Vanilla planifolia HOM05D005921 ORTHO05D007374 3.8e-88 329.7 320 51.6
QL02p037446 Quercus lobata HOM05D005921 ORTHO05D007374 1.1e-87 328.2 240 64.2
QL02p037946 Quercus lobata HOM05D005921 ORTHO05D007374 1.1e-87 328.2 240 64.2
SHI09099 Sapria himalayana HOM05D005921 ORTHO05D007374 1.8e-85 320.9 299 52.2
Oeu017621.1 Olea europaea HOM05D005921 ORTHO05D007374 4.1e-82 309.7 173 78.0
MCO15G195 Micromonas commoda HOM05D005921 ORTHO05D007374 2.7e-70 270.4 386 37.8
PRCOL_00005633 Prasinoderma coloniale HOM05D005921 ORTHO05D007374 2.7e-62 243.8 328 40.2
Os06g0144600 Oryza sativa ssp. japonica HOM05D005921 ORTHO05D007374 2.2e-56 224.2 188 58.5
Zm00001eb035610 Zea mays HOM05D005921 ORTHO05D007374 2.3e-53 214.2 168 60.1
SEGI_33860 Sequoiadendron giganteum HOM05D005921 ORTHO05D007374 1.2e-52 211.8 231 49.8
Zm00001eb246880 Zea mays HOM05D005921 ORTHO05D007374 1.5e-39 168.3 108 66.7
Cre07.g335900 Chlamydomonas reinhardtii HOM05D005921 ORTHO05D007374 1.9e-39 167.9 371 32.1
SEGI_16149 Sequoiadendron giganteum HOM05D005921 ORTHO05D007374 1.4e-37 161.8 104 66.3
Cre06.g309450 Chlamydomonas reinhardtii HOM05D005921 ORTHO05D007374 4.3e-31 140.2 339 31.6
SHI09097 Sapria himalayana HOM05D005921 ORTHO05D007374 3.6e-30 137.1 74 77.0
Duzib093G1718 Durio zibethinus HOM05D005921 ORTHO05D007374 2.2e-27 127.9 73 74.0
Pp3c27_7150 Physcomitrium patens HOM05D005921 ORTHO05D007374 1.5e-23 115.2 380 27.1
MD10G1034600 Malus domestica HOM05D005921 ORTHO05D007374 3.6e-22 110.5 129 45.7
Zm00001eb035620 Zea mays HOM05D005921 ORTHO05D007374 1.1e-21 109.0 55 81.8
Sabra02G0051300 Salix brachista HOM05D005921 ORTHO05D007374 2.1e-14 84.7 112 45.5
CBR_g24397 Chara braunii HOM05D005921 ORTHO05D132278 3.6e-06 57.4 81 32.1


User provided reference genes

Program Settings