Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G31100 Arabidopsis lyrata HOM05D005625 ORTHO05D007564 9.8e-300 1032.7 532 100.0
AT1G71440 Arabidopsis thaliana HOM05D005625 ORTHO05D007564 1.6e-281 972.2 532 94.4
Thhalv10018392m.g Eutrema salsugineum HOM05D005625 ORTHO05D007564 1.0e-272 943.0 532 90.4
Carub.0002s1829 Capsella rubella HOM05D005625 ORTHO05D007564 6.6e-272 940.3 532 90.0
CARHR291240 Cardamine hirsuta HOM05D005625 ORTHO05D007564 3.1e-269 931.4 532 90.4
Sp5g26600 Schrenkiella parvula HOM05D005625 ORTHO05D007564 6.4e-259 897.1 532 86.3
Aa31LG4G9140 Aethionema arabicum HOM05D005625 ORTHO05D007564 5.5e-250 867.5 532 82.9
BraA07t31336Z Brassica rapa HOM05D005625 ORTHO05D007564 2.9e-235 818.5 534 80.7
A07p37730 Brassica napus HOM05D005625 ORTHO05D007564 6.1e-233 810.8 534 80.0
BolC6t39611H Brassica oleracea HOM05D005625 ORTHO05D007564 3.3e-231 805.1 534 79.8
BcaC08g46580 Brassica carinata HOM05D005625 ORTHO05D007564 5.3e-229 797.7 532 78.6
C06p45600 Brassica napus HOM05D005625 ORTHO05D007564 9.1e-221 770.4 534 77.2
THA.LOC104810982 Tarenaya hassleriana HOM05D005625 ORTHO05D007564 1.9e-218 762.7 540 74.1
Gohir.D13G119200 Gossypium hirsutum HOM05D005625 ORTHO05D007564 5.7e-199 698.0 529 67.1
Thecc.08G177300 Theobroma cacao HOM05D005625 ORTHO05D007564 7.5e-199 697.6 534 66.5
Gohir.A13G116000 Gossypium hirsutum HOM05D005625 ORTHO05D007564 9.8e-199 697.2 531 66.9
Gorai.013G133700 Gossypium raimondii HOM05D005625 ORTHO05D007564 1.7e-198 696.4 529 66.9
COL.COLO4_24882 Corchorus olitorius HOM05D005625 ORTHO05D007564 2.2e-198 696.0 531 65.9
Manes.18G118300 Manihot esculenta HOM05D005625 ORTHO05D007564 4.8e-198 694.9 537 67.4
Sc14g0005960 Simmondsia chinensis HOM05D005625 ORTHO05D007564 1.1e-197 693.7 528 65.9
Prupe.1G544200 Prunus persica HOM05D005625 ORTHO05D007564 1.4e-197 693.3 539 65.7
Rhsim02G0173300 Rhododendron simsii HOM05D005625 ORTHO05D007564 5.4e-197 691.4 535 65.8
CSS0007097 Camellia sinensis var. sinensis HOM05D005625 ORTHO05D007564 1.6e-196 689.9 537 65.9
RcHm_v2.0_Chr7g0232101 Rosa chinensis HOM05D005625 ORTHO05D007564 5.9e-196 688.0 538 65.4
Haze_13951 Corylus avellana HOM05D005625 ORTHO05D007564 1.0e-195 687.2 535 65.0
Potri.019G072700 Populus trichocarpa HOM05D005625 ORTHO05D007564 5.5e-194 681.4 540 63.3
GSVIVG01036380001 Vitis vinifera HOM05D005625 ORTHO05D007564 7.2e-194 681.0 535 64.3
Actinidia29383 Actinidia chinensis HOM05D005625 ORTHO05D007564 3.6e-193 678.7 530 66.4
MD15G1395400 Malus domestica HOM05D005625 ORTHO05D007564 3.6e-193 678.7 533 64.4
TWI18G0532 Tripterygium wilfordii HOM05D005625 ORTHO05D007564 4.7e-193 678.3 540 64.6
CANSAT56G1751 Cannabis sativa HOM05D005625 ORTHO05D007564 8.0e-193 677.6 523 64.6
CiPaw.04G063100 Carya illinoinensis HOM05D005625 ORTHO05D007564 1.4e-192 676.8 535 63.9
FvH4_5g33370 Fragaria vesca HOM05D005625 ORTHO05D007564 1.4e-192 676.8 535 64.5
FAN18G2766 Fragaria x ananassa HOM05D005625 ORTHO05D007564 2.3e-192 676.0 535 64.5
Aqoxy5G00836 Aquilegia oxysepala HOM05D005625 ORTHO05D007564 1.2e-191 673.7 541 63.2
Lj7C421T14 Lonicera japonica HOM05D005625 ORTHO05D007564 7.5e-191 671.0 522 64.9
QL09p002063 Quercus lobata HOM05D005625 ORTHO05D007564 9.8e-191 670.6 536 64.4
Ciclev10014850m.g Citrus clementina HOM05D005625 ORTHO05D007564 2.2e-190 669.5 533 64.9
Ah.02g127420 Amaranthus hybridus HOM05D005625 ORTHO05D007564 3.7e-190 668.7 529 63.7
Oeu028924.1 Olea europaea HOM05D005625 ORTHO05D007564 8.3e-190 667.5 531 64.0
TAR381G1540 Trochodendron aralioides HOM05D005625 ORTHO05D007564 3.2e-189 665.6 532 62.8
AUR62024898 Chenopodium quinoa HOM05D005625 ORTHO05D007564 1.2e-188 663.7 527 63.9
Sabra19G0084000 Salix brachista HOM05D005625 ORTHO05D007564 1.2e-188 663.7 558 61.1
Cfa008087 Carpinus fangiana HOM05D005625 ORTHO05D007564 1.0e-187 660.6 524 63.7
AUR62030641 Chenopodium quinoa HOM05D005625 ORTHO05D007564 1.7e-187 659.8 543 62.6
FAN04G0928 Fragaria x ananassa HOM05D005625 ORTHO05D007564 5.0e-187 658.3 561 62.0
DCAR_006209 Daucus carota HOM05D005625 ORTHO05D007564 8.6e-187 657.5 530 63.4
DCAR_017431 Daucus carota HOM05D005625 ORTHO05D007564 1.9e-186 656.4 531 62.9
PGR044G1301 Punica granatum HOM05D005625 ORTHO05D007564 1.2e-185 653.7 532 62.6
Phvul.006G130900 Phaseolus vulgaris HOM05D005625 ORTHO05D007564 3.6e-185 652.1 521 64.7
PSO017G2953 Papaver somniferum HOM05D005625 ORTHO05D007564 8.0e-185 651.0 532 59.6
Cc10_g08740 Coffea canephora HOM05D005625 ORTHO05D007564 6.8e-184 647.9 533 61.4
MELO3C011830.2 Cucumis melo HOM05D005625 ORTHO05D007564 1.2e-183 647.1 530 61.7
Migut.C01373 Erythranthe guttata HOM05D005625 ORTHO05D007564 1.2e-183 647.1 522 63.0
MSTRG.25496 Avicennia marina HOM05D005625 ORTHO05D007564 1.5e-183 646.7 539 60.9
PSO170G6063 Papaver somniferum HOM05D005625 ORTHO05D007564 2.0e-183 646.4 532 59.8
CsaV3_1G044090 Cucumis sativus L. HOM05D005625 ORTHO05D007564 3.4e-183 645.6 530 62.1
Glyma.09G021200 Glycine max HOM05D005625 ORTHO05D007564 7.5e-183 644.4 522 62.5
Lj6g0017830 Lotus japonicus HOM05D005625 ORTHO05D007564 2.2e-182 642.9 528 61.9
ECA232G1187 Erigeron canadensis HOM05D005625 ORTHO05D007564 8.3e-182 641.0 535 60.0
Sopen11g018630 Solanum pennellii HOM05D005625 ORTHO05D007564 9.2e-181 637.5 534 61.0
Medtr2g029250 Medicago truncatula HOM05D005625 ORTHO05D007564 1.2e-180 637.1 532 60.9
MBI03_g28415_MAGBIO Magnolia biondii HOM05D005625 ORTHO05D007564 2.0e-180 636.3 547 61.2
EL10Ac6g14591 Beta vulgaris HOM05D005625 ORTHO05D007564 3.0e-179 632.5 585 57.1
arahy.Tifrunner.gnm1.ann1.U40EKY Arachis hypogaea HOM05D005625 ORTHO05D007564 1.9e-178 629.8 575 57.9
Lalb_Chr15g0088631 Lupinus albus HOM05D005625 ORTHO05D007564 3.3e-178 629.0 529 61.4
HanXRQChr11g0326321 Helianthus annuus HOM05D005625 ORTHO05D007564 7.3e-178 627.9 521 61.0
CAN.G990.6 Capsicum annuum HOM05D005625 ORTHO05D007564 1.1e-176 624.0 537 59.6
Sed0019265 Sechium edule HOM05D005625 ORTHO05D007564 2.3e-176 622.9 531 61.2
TPR.G17519 Trifolium pratense HOM05D005625 ORTHO05D007564 1.5e-175 620.2 532 59.2
Eucgr.K01840 Eucalyptus grandis HOM05D005625 ORTHO05D007564 5.4e-173 611.7 538 58.4
Lsat_1_v5_gn_2_82040 Lactuca sativa HOM05D005625 ORTHO05D007564 1.3e-171 607.1 529 59.0
Duzib177G0227 Durio zibethinus HOM05D005625 ORTHO05D007564 2.3e-171 606.3 533 60.4
Dinv16108 Davidia involucrata HOM05D005625 ORTHO05D007564 2.8e-169 599.4 450 67.3
VMungo0540G1936 Vigna mungo HOM05D005625 ORTHO05D007564 4.7e-169 598.6 554 57.6
Psat1g169440 Pisum sativum HOM05D005625 ORTHO05D007564 3.4e-167 592.4 531 56.5
arahy.Tifrunner.gnm1.ann1.I4CKLR Arachis hypogaea HOM05D005625 ORTHO05D007564 8.3e-166 587.8 543 57.5
arahy.Tifrunner.gnm1.ann1.23CDJN Arachis hypogaea HOM05D005625 ORTHO05D007564 1.9e-165 586.6 496 61.3
Cpa.g.sc21.80 Carica papaya HOM05D005625 ORTHO05D007564 4.6e-164 582.0 441 67.8
arahy.Tifrunner.gnm1.ann1.0NEN23 Arachis hypogaea HOM05D005625 ORTHO05D007564 3.0e-163 579.3 582 54.8
SGA_v2.0_scaffold118G32606 Striga asiatica HOM05D005625 ORTHO05D007564 2.5e-162 576.2 545 57.2
Zm00001eb233200 Zea mays HOM05D005625 ORTHO05D007564 4.3e-162 575.5 531 54.4
ATR1089G039 Amborella trichopoda HOM05D005625 ORTHO05D007564 8.9e-160 567.8 499 58.3
unitig_578.g16118 Utricularia gibba HOM05D005625 ORTHO05D007564 8.9e-160 567.8 538 57.1
HPP92_015711 Vanilla planifolia HOM05D005625 ORTHO05D007564 4.6e-156 555.4 528 54.2
HPP92_026650 Vanilla planifolia HOM05D005625 ORTHO05D007564 5.3e-152 542.0 528 53.2
Ca_07151_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 3.0e-147 526.2 532 52.6
Nn5g27281 Nelumbo nucifera HOM05D005625 ORTHO05D007564 3.3e-146 522.7 437 60.6
Ca_00793_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 7.1e-141 505.0 531 51.2
Solyc11g042470.1 Solanum lycopersicum HOM05D005625 ORTHO05D007564 2.3e-131 473.4 413 59.3
vmacro11035 Vaccinium macrocarpon HOM05D005625 ORTHO05D007564 7.4e-130 468.4 572 48.3
Peaxi162Scf00078g00533 Petunia axillaris HOM05D005625 ORTHO05D007564 1.0e-126 458.0 397 58.7
Nitab4.5_0001155g0010 Nicotiana tabacum HOM05D005625 ORTHO05D007564 1.2e-124 451.1 401 59.9
Mapoly0057s0080 Marchantia polymorpha HOM05D005625 ORTHO05D007564 1.8e-123 447.2 548 47.1
Pp3c13_4420 Physcomitrium patens HOM05D005625 ORTHO05D007564 9.7e-122 441.4 544 44.7
SMO145G0237 Selaginella moellendorffii HOM05D005625 ORTHO05D007564 4.8e-121 439.1 530 45.7
Sabra15G0066200 Salix brachista HOM05D005625 ORTHO05D007564 3.9e-107 392.9 355 56.6
Sabra15G0066000 Salix brachista HOM05D005625 ORTHO05D007564 1.5e-106 391.0 355 56.3
SHI16719 Sapria himalayana HOM05D005625 ORTHO05D007564 1.8e-104 384.0 502 45.2
Pp3c9_6720 Physcomitrium patens HOM05D005625 ORTHO05D007564 5.0e-102 375.9 556 39.4
Atru.chr11.652 Acer truncatum HOM05D005625 ORTHO05D007564 1.8e-99 367.5 283 65.7
CBR_g2823 Chara braunii HOM05D005625 ORTHO05D007564 1.6e-95 354.4 548 39.4
ClCG03G011780 Citrullus lanatus HOM05D005625 ORTHO05D007564 5.2e-91 339.3 287 60.6
AagrBONN_evm.TU.Sc2ySwM_344.4267 Anthoceros agrestis HOM05D005625 ORTHO05D007564 4.4e-90 336.3 467 41.8
SEGI_17074 Sequoiadendron giganteum HOM05D005625 ORTHO05D007564 1.4e-80 304.7 283 56.9
AagrBONN_evm.TU.Sc2ySwM_344.5166 Anthoceros agrestis HOM05D005625 ORTHO05D007564 2.7e-71 273.9 386 42.2
FAN08G2869 Fragaria x ananassa HOM05D005625 ORTHO05D007564 2.5e-69 267.3 204 67.6
PRCOL_00002543 Prasinoderma coloniale HOM05D005625 ORTHO05D007564 3.3e-69 266.9 560 32.7
MCO15G211 Micromonas commoda HOM05D005625 ORTHO05D007564 1.5e-66 258.1 574 32.9
Nitab4.5_0000213g0250 Nicotiana tabacum HOM05D005625 ORTHO05D007564 4.6e-55 219.9 212 55.7
Cre02.g095113 Chlamydomonas reinhardtii HOM05D005625 ORTHO05D007564 6.0e-55 219.5 549 30.4
ClCG03G011750 Citrullus lanatus HOM05D005625 ORTHO05D007564 6.8e-51 206.1 151 67.5
PGSC0003DMG400019987 Solanum tuberosum HOM05D005625 ORTHO05D007564 4.1e-48 196.8 156 64.7
Os05g0105300 Oryza sativa ssp. japonica HOM05D005625 ORTHO05D007564 8.1e-44 182.6 169 50.9
Peaxi162Scf00078g00534 Petunia axillaris HOM05D005625 ORTHO05D007564 1.1e-43 182.2 135 66.7
Nitab4.5_0000213g0260 Nicotiana tabacum HOM05D005625 ORTHO05D007564 5.8e-42 176.4 130 65.4
BcaB04g17633 Brassica carinata HOM05D005625 ORTHO05D007564 3.2e-40 170.6 108 84.3
Glyma.15G127567 Glycine max HOM05D005625 ORTHO05D007564 9.3e-40 169.1 135 64.4
Glyma.15G127633 Glycine max HOM05D005625 ORTHO05D007564 8.1e-36 156.0 123 60.2
Nitab4.5_0001155g0020 Nicotiana tabacum HOM05D005625 ORTHO05D007564 1.5e-29 135.2 113 59.3
Solyc11g042500.3 Solanum lycopersicum HOM05D005625 ORTHO05D007564 4.0e-27 127.1 99 64.6
Hund08558 Selenicereus undatus HOM05D005625 ORTHO05D007564 2.4e-24 117.9 85 68.2
Cfa026593 Carpinus fangiana HOM05D005625 ORTHO05D007564 5.5e-24 116.7 433 27.5
C02p28970 Brassica napus HOM05D005625 ORTHO05D022022 1.3e-22 112.1 100 64.0
BolC2t08946H Brassica oleracea HOM05D005625 ORTHO05D022022 8.7e-22 109.4 71 80.3
A02p17310 Brassica napus HOM05D005625 ORTHO05D022022 5.6e-21 106.7 364 29.9
BraA02t06779Z Brassica rapa HOM05D005625 ORTHO05D022022 5.6e-21 106.7 364 29.9
TPR.G26547 Trifolium pratense HOM05D005625 ORTHO05D022022 1.4e-16 92.0 99 47.5
BolC2t08947H Brassica oleracea HOM05D005625 ORTHO05D022022 1.0e-14 85.9 87 60.9
ClCG03G011760 Citrullus lanatus HOM05D000004 ORTHO05D000002 5.1e-14 83.6 125 40.0
arahy.Tifrunner.gnm1.ann1.6SNM9F Arachis hypogaea HOM05D005625 ORTHO05D007564 6.3e-12 76.6 114 46.5
arahy.Tifrunner.gnm1.ann1.GWKT0Q Arachis hypogaea HOM05D005625 ORTHO05D007564 3.4e-10 70.9 114 40.4
PSO478G1928 Papaver somniferum HOM05D005625 ORTHO05D002418 1.7e-09 68.6 73 46.6
Cpa.g.c47759 Carica papaya HOM05D005625 ORTHO05D007564 3.8e-09 67.4 49 61.2
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 1.1e-08 65.9 298 27.2
TWI34G1250 Tripterygium wilfordii HOM05D000311 ORTHO05D000183 1.0e-06 59.3 212 34.0
Eucgr.C04416 Eucalyptus grandis HOM05D000311 ORTHO05D000183 1.8e-06 58.5 251 27.1
SMO009G0022 Selaginella moellendorffii HOM05D016773 ORTHO05D019668 8.7e-06 56.2 329 26.4


User provided reference genes

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