Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G31090 Arabidopsis lyrata HOM05D004771 ORTHO05D005565 3.2e-68 261.9 164 100.0
AT1G71430 Arabidopsis thaliana HOM05D004771 ORTHO05D005565 1.6e-59 233.0 165 92.1
Carub.0002s1828 Capsella rubella HOM05D004771 ORTHO05D005565 1.3e-45 186.8 175 74.9
Thhalv10019781m.g Eutrema salsugineum HOM05D004771 ORTHO05D005565 8.6e-37 157.5 173 64.7
BraA02t06780Z Brassica rapa HOM05D004771 ORTHO05D005565 1.2e-35 153.7 170 64.7
BcaC03g15291 Brassica carinata HOM05D004771 ORTHO05D005565 2.8e-35 152.5 172 64.5
C02p28980 Brassica napus HOM05D004771 ORTHO05D005565 2.8e-35 152.5 172 64.5
A02p17330 Brassica napus HOM05D004771 ORTHO05D005565 3.6e-35 152.1 170 64.1
BolC2t08948H Brassica oleracea HOM05D004771 ORTHO05D005565 1.8e-34 149.8 174 67.2
BcaC02g09527 Brassica carinata HOM05D004771 ORTHO05D005565 8.9e-34 147.5 172 63.4
C04p43760 Brassica napus HOM05D004771 ORTHO05D005565 8.9e-34 147.5 172 63.4
BolC4t25958H Brassica oleracea HOM05D004771 ORTHO05D005565 8.9e-34 147.5 172 63.4
CARHR291250 Cardamine hirsuta HOM05D004771 ORTHO05D005565 1.7e-32 143.3 169 63.3
BraA07t31335Z Brassica rapa HOM05D004771 ORTHO05D005565 1.1e-31 140.6 177 62.7
BcaB05g24668 Brassica carinata HOM05D004771 ORTHO05D005565 2.7e-30 136.0 173 64.7
THA.LOC104816989 Tarenaya hassleriana HOM05D004771 ORTHO05D005565 6.0e-30 134.8 140 61.4
Sp5g26590 Schrenkiella parvula HOM05D004771 ORTHO05D005565 6.6e-29 131.3 175 62.3
Aa31LG2G7800 Aethionema arabicum HOM05D004771 ORTHO05D005565 2.5e-28 129.4 163 62.6
Ciclev10029295m.g Citrus clementina HOM05D004771 ORTHO05D005565 1.6e-27 126.7 133 58.6
Ciclev10029331m.g Citrus clementina HOM05D004771 ORTHO05D005565 1.6e-27 126.7 133 58.6
A07p37720 Brassica napus HOM05D004771 ORTHO05D005565 2.8e-27 125.9 179 62.6
COL.COLO4_17806 Corchorus olitorius HOM05D004771 ORTHO05D005565 4.7e-27 125.2 133 57.9
C06p45590 Brassica napus HOM05D004771 ORTHO05D005565 1.1e-26 124.0 177 62.7
BolC6t39610H Brassica oleracea HOM05D004771 ORTHO05D005565 1.1e-26 124.0 177 62.7
COL.COLO4_26627 Corchorus olitorius HOM05D004771 ORTHO05D005565 1.4e-26 123.6 120 60.0
Migut.M00048 Erythranthe guttata HOM05D004771 ORTHO05D005565 1.4e-26 123.6 185 44.3
QL11p028495 Quercus lobata HOM05D004771 ORTHO05D005565 2.3e-26 122.9 131 55.0
Thecc.02G032500 Theobroma cacao HOM05D004771 ORTHO05D005565 2.3e-26 122.9 132 59.8
CANSAT25G2974 Cannabis sativa HOM05D004771 ORTHO05D005565 6.8e-26 121.3 139 54.0
QL09p037751 Quercus lobata HOM05D004771 ORTHO05D005565 8.9e-26 120.9 140 54.3
arahy.Tifrunner.gnm1.ann1.DYSV1F Arachis hypogaea HOM05D004771 ORTHO05D005565 1.2e-25 120.6 193 44.0
CANSAT25G0049 Cannabis sativa HOM05D004771 ORTHO05D005565 3.4e-25 119.0 139 53.2
Duzib132G0558 Durio zibethinus HOM05D004771 ORTHO05D005565 3.4e-25 119.0 132 56.8
Gohir.D01G171700 Gossypium hirsutum HOM05D004771 ORTHO05D005565 4.4e-25 118.6 133 57.1
AUR62009845 Chenopodium quinoa HOM05D004771 ORTHO05D005565 5.8e-25 118.2 169 47.9
Gohir.A01G180600 Gossypium hirsutum HOM05D004771 ORTHO05D005565 7.5e-25 117.9 123 57.7
AUR62038158 Chenopodium quinoa HOM05D004771 ORTHO05D005565 1.7e-24 116.7 138 53.6
arahy.Tifrunner.gnm1.ann1.8327BB Arachis hypogaea HOM05D004771 ORTHO05D005565 2.2e-24 116.3 192 43.8
Lj8P345T14 Lonicera japonica HOM05D004771 ORTHO05D005565 3.7e-24 115.5 158 43.0
TWI23G0030 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 3.7e-24 115.5 130 53.1
TWI14G0977 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 4.9e-24 115.2 118 55.1
CiPaw.05G182000 Carya illinoinensis HOM05D004771 ORTHO05D005565 6.4e-24 114.8 161 52.8
Gorai.002G213200 Gossypium raimondii HOM05D004771 ORTHO05D005565 1.9e-23 113.2 140 53.6
Psat6g007560 Pisum sativum HOM05D004771 ORTHO05D005565 1.9e-23 113.2 136 54.4
PGR142G3141 Punica granatum HOM05D004771 ORTHO05D005565 1.9e-23 113.2 123 54.5
CSS0030116 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 5.4e-23 111.7 135 53.3
FvH4_2g02960 Fragaria vesca HOM05D004771 ORTHO05D005565 5.4e-23 111.7 131 51.9
Hund20829 Selenicereus undatus HOM05D004771 ORTHO05D005565 9.2e-23 110.9 123 52.8
TAR625G0649 Trochodendron aralioides HOM05D004771 ORTHO05D005565 9.2e-23 110.9 132 51.5
GSVIVG01037017001 Vitis vinifera HOM05D004771 ORTHO05D005565 9.2e-23 110.9 132 53.8
Cfa004725 Carpinus fangiana HOM05D004771 ORTHO05D005565 1.2e-22 110.5 131 53.4
Haze_10334 Corylus avellana HOM05D004771 ORTHO05D005565 1.2e-22 110.5 131 53.4
Phvul.007G048400 Phaseolus vulgaris HOM05D004771 ORTHO05D005565 1.2e-22 110.5 138 54.3
RcHm_v2.0_Chr6g0247751 Rosa chinensis HOM05D004771 ORTHO05D005565 1.2e-22 110.5 130 53.1
TPR.G31901 Trifolium pratense HOM05D004771 ORTHO05D005565 1.2e-22 110.5 129 59.7
FAN24G0749 Fragaria x ananassa HOM05D004771 ORTHO05D005565 1.6e-22 110.2 130 51.5
Glyma.20G137100 Glycine max HOM05D004771 ORTHO05D005565 1.6e-22 110.2 141 52.5
Sed0002941 Sechium edule HOM05D004771 ORTHO05D005565 1.6e-22 110.2 122 56.6
Medtr1g009780 Medicago truncatula HOM05D004771 ORTHO05D005565 2.1e-22 109.8 125 55.2
TAR628G1069 Trochodendron aralioides HOM05D004771 ORTHO05D005565 2.1e-22 109.8 123 53.7
GSVIVG01022390001 Vitis vinifera HOM05D004771 ORTHO05D005565 2.1e-22 109.8 132 53.0
Nn4g25002 Nelumbo nucifera HOM05D004771 ORTHO05D005565 2.7e-22 109.4 137 50.4
Atru.chr4.2044 Acer truncatum HOM05D004771 ORTHO05D005565 4.6e-22 108.6 133 53.4
Lj8C288T1 Lonicera japonica HOM05D004771 ORTHO05D005565 4.6e-22 108.6 135 50.4
CSS0010443 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 6.0e-22 108.2 136 53.7
Actinidia33010 Actinidia chinensis HOM05D004771 ORTHO05D005565 7.8e-22 107.8 134 53.0
CANSAT56G2106 Cannabis sativa HOM05D004771 ORTHO05D005565 7.8e-22 107.8 167 44.3
MSTRG.6635 Avicennia marina HOM05D004771 ORTHO05D005565 1.0e-21 107.5 138 49.3
ECA248G2169 Erigeron canadensis HOM05D004771 ORTHO05D005565 1.0e-21 107.5 90 67.8
Aqoxy5G00826 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 1.7e-21 106.7 138 52.2
Lj5g0002463 Lotus japonicus HOM05D004771 ORTHO05D005565 1.7e-21 106.7 139 51.8
Cpa.g.c27001.4 Carica papaya HOM05D004771 ORTHO05D005565 2.3e-21 106.3 133 53.4
PSO170G1616 Papaver somniferum HOM05D004771 ORTHO05D005565 2.3e-21 106.3 145 49.7
EL10Ac7g16361 Beta vulgaris HOM05D004771 ORTHO05D005565 3.0e-21 105.9 138 49.3
Manes.10G087700 Manihot esculenta HOM05D004771 ORTHO05D005565 3.0e-21 105.9 118 50.8
Nitab4.5_0000575g0030 Nicotiana tabacum HOM05D004771 ORTHO05D005565 3.0e-21 105.9 152 47.4
PSO528G0234 Papaver somniferum HOM05D004771 ORTHO05D005565 3.0e-21 105.9 133 51.1
Lj6g0021608 Lotus japonicus HOM05D004771 ORTHO05D005565 3.9e-21 105.5 141 51.8
PSO017G4159 Papaver somniferum HOM05D004771 ORTHO05D005565 3.9e-21 105.5 120 55.0
Eucgr.I02508 Eucalyptus grandis HOM05D004771 ORTHO05D005565 5.1e-21 105.1 137 48.9
Nn2g15843 Nelumbo nucifera HOM05D004771 ORTHO05D005565 5.1e-21 105.1 139 49.6
TPR.G12006 Trifolium pratense HOM05D004771 ORTHO05D005565 5.1e-21 105.1 157 45.9
PSO170G1452 Papaver somniferum HOM05D004771 ORTHO05D005565 6.6e-21 104.8 120 55.0
Potri.015G035700 Populus trichocarpa HOM05D004771 ORTHO05D005565 6.6e-21 104.8 132 49.2
ClCG10G002170 Citrullus lanatus HOM05D004771 ORTHO05D005565 8.6e-21 104.4 132 52.3
Nitab4.5_0002078g0010 Nicotiana tabacum HOM05D004771 ORTHO05D005565 1.5e-20 103.6 139 49.6
Prupe.8G152600 Prunus persica HOM05D004771 ORTHO05D005565 1.5e-20 103.6 131 51.9
CsaV3_3G002260 Cucumis sativus L. HOM05D004771 ORTHO05D005565 1.9e-20 103.2 135 51.9
Dinv44219 Davidia involucrata HOM05D000703 ORTHO05D000633 1.9e-20 103.2 125 55.2
Sopen04g019850 Solanum pennellii HOM05D004771 ORTHO05D005565 1.9e-20 103.2 136 50.7
Aqoxy3G02687 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 3.3e-20 102.4 159 49.1
Aqoxy3G04244 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 3.3e-20 102.4 137 51.8
MELO3C013897.2 Cucumis melo HOM05D004771 ORTHO05D005565 3.3e-20 102.4 132 50.8
Eucgr.C02425 Eucalyptus grandis HOM05D004771 ORTHO05D005565 3.3e-20 102.4 137 48.9
VMungo0720G1115 Vigna mungo HOM05D004771 ORTHO05D005565 3.3e-20 102.4 116 56.9
MD10G1112800 Malus domestica HOM05D004771 ORTHO05D005565 4.3e-20 102.1 139 49.6
Sc12g0010390 Simmondsia chinensis HOM05D004771 ORTHO05D005565 4.3e-20 102.1 107 56.1
Solyc04g049660.3 Solanum lycopersicum HOM05D004771 ORTHO05D005565 4.3e-20 102.1 136 50.0
PGSC0003DMG400005017 Solanum tuberosum HOM05D004771 ORTHO05D005565 4.3e-20 102.1 129 52.7
Aqoxy3G02689_Aqoxy3G02690 Aquilegia oxysepala HOM05D001377 ORTHO05D005565 9.5e-20 100.9 138 50.7
PGSC0003DMG400028994 Solanum tuberosum HOM05D004771 ORTHO05D005565 9.5e-20 100.9 197 43.7
Ca_12871_v3 Cicer arietinum L. HOM05D004771 ORTHO05D005565 1.6e-19 100.1 107 56.1
Lsat_1_v5_gn_1_71561 Lactuca sativa HOM05D007128 ORTHO05D009059 1.6e-19 100.1 93 63.4
Peaxi162Scf00170g00041 Petunia axillaris HOM05D004771 ORTHO05D005565 1.6e-19 100.1 139 50.4
SGA_v2.0_scaffold181G39690 Striga asiatica HOM05D004771 ORTHO05D005565 1.6e-19 100.1 115 53.0
Haze_04594 Corylus avellana HOM05D000399 ORTHO05D000304 2.1e-19 99.8 158 45.6
Lalb_Chr02g0144821 Lupinus albus HOM05D004771 ORTHO05D005565 2.1e-19 99.8 144 50.7
CAN.G490.38 Capsicum annuum HOM05D004771 ORTHO05D005565 3.6e-19 99.0 161 43.5
Cc00_g19310 Coffea canephora HOM05D004771 ORTHO05D005565 6.2e-19 98.2 190 40.5
unitig_899.g15063 Utricularia gibba HOM05D004771 ORTHO05D005565 6.2e-19 98.2 134 49.3
DCAR_007735 Daucus carota HOM05D004771 ORTHO05D005565 8.1e-19 97.8 140 48.6
Dinv22681 Davidia involucrata HOM05D004771 ORTHO05D005565 2.4e-18 96.3 98 58.2
CAN.G630.7 Capsicum annuum HOM05D004771 ORTHO05D005565 3.1e-18 95.9 139 47.5
MBI13_g09224_MAGBIO Magnolia biondii HOM05D004771 ORTHO05D005565 6.8e-18 94.7 144 47.2
ATR0736G167 Amborella trichopoda HOM05D004771 ORTHO05D005565 8.9e-18 94.4 128 49.2
HanXRQChr05g0160091 Helianthus annuus HOM05D004771 ORTHO05D005565 8.9e-18 94.4 147 46.3
MD05G1109000 Malus domestica HOM05D004771 ORTHO05D005565 1.2e-17 94.0 145 45.5
RhsimUnG0159200 Rhododendron simsii HOM05D004771 ORTHO05D005565 3.4e-17 92.4 132 50.8
Cc02_g28780 Coffea canephora HOM05D004771 ORTHO05D005565 2.2e-16 89.7 141 44.7
DCAR_027620 Daucus carota HOM05D004771 ORTHO05D005565 4.9e-16 88.6 92 56.5
arahy.Tifrunner.gnm1.ann1.ATP5C9 Arachis hypogaea HOM05D004771 ORTHO05D005565 6.4e-16 88.2 86 61.6
Medtr3g080910 Medicago truncatula HOM05D004771 ORTHO05D005565 1.9e-15 86.7 83 59.0
SEGI_32093 Sequoiadendron giganteum HOM05D004771 ORTHO05D005565 1.9e-15 86.7 123 48.0
CDE05G2657 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 2.4e-15 86.3 140 42.1
CDE02G0226 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 3.2e-15 85.9 124 46.0
Os01g0617800 Oryza sativa ssp. japonica HOM05D004771 ORTHO05D005565 3.2e-15 85.9 94 55.3
AUR62017723 Chenopodium quinoa HOM05D004771 ORTHO05D005565 1.6e-14 83.6 108 50.0
Zm00001eb002910 Zea mays HOM05D004771 ORTHO05D005565 6.0e-14 81.6 76 59.2
Zm00001eb003040 Zea mays HOM05D004771 ORTHO05D005565 6.0e-14 81.6 76 59.2
vmacro05477 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 7.8e-14 81.3 87 58.6
Zm00001eb159770 Zea mays HOM05D004771 ORTHO05D005565 1.3e-13 80.5 76 57.9
SalBow7G1175 Salvia bowleyana HOM05D004771 ORTHO05D005565 1.5e-12 77.0 148 39.9
Manes.07G051000 Manihot esculenta HOM05D004771 ORTHO05D005565 3.3e-12 75.9 75 57.3
Sed0006388 Sechium edule HOM05D004771 ORTHO05D005565 3.3e-12 75.9 81 54.3
HPP92_002219 Vanilla planifolia HOM05D006274 ORTHO05D007782 5.6e-12 75.1 89 49.4
arahy.Tifrunner.gnm1.ann1.P0FJQ9 Arachis hypogaea HOM05D004771 ORTHO05D005565 6.2e-11 71.6 109 44.0
arahy.Tifrunner.gnm1.ann1.S1TJ9S Arachis hypogaea HOM05D004771 ORTHO05D005565 8.1e-11 71.2 75 60.0
HanXRQChr11g0345411 Helianthus annuus HOM05D004771 ORTHO05D005565 1.1e-10 70.9 188 36.7
Gohir.D01G171500 Gossypium hirsutum HOM05D004771 ORTHO05D005565 1.4e-10 70.5 61 65.6
CARHR045930 Cardamine hirsuta HOM05D004771 ORTHO05D005565 1.8e-10 70.1 114 47.4
arahy.Tifrunner.gnm1.ann1.MQV2C0 Arachis hypogaea HOM05D004771 ORTHO05D005565 3.1e-10 69.3 113 41.6
Rhsim09G0033000 Rhododendron simsii HOM05D004771 ORTHO05D005565 3.1e-10 69.3 56 71.4
Glyma.10G254400 Glycine max HOM05D004771 ORTHO05D005565 4.0e-10 68.9 116 42.2
Mapoly0060s0029 Marchantia polymorpha HOM05D004771 ORTHO05D005565 4.0e-10 68.9 136 39.7
Oeu012349.1 Olea europaea HOM05D004771 ORTHO05D005565 2.6e-09 66.2 62 62.9
vmacro00584 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 2.6e-09 66.2 47 74.5
BcaC08g46579 Brassica carinata HOM05D004771 ORTHO05D005565 9.9e-09 64.3 89 61.8
Pp3c4_10090 Physcomitrium patens HOM05D004771 ORTHO05D005565 2.2e-08 63.2 101 44.6
Rhsim02G0173400 Rhododendron simsii HOM05D004771 ORTHO05D005565 2.2e-08 63.2 42 76.2
Nitab4.5_0001458g0040 Nicotiana tabacum HOM05D004771 ORTHO05D005565 2.9e-08 62.8 55 65.5
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 1.4e-07 60.5 43 69.8


User provided reference genes

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