Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G30920 Arabidopsis lyrata HOM05D005563 ORTHO05D006667 4.7e-238 827.4 401 100.0
AL1G12770 Arabidopsis lyrata HOM05D005563 ORTHO05D006667 5.4e-226 787.3 401 96.3
AT5G24670 Arabidopsis thaliana HOM05D005563 ORTHO05D006667 1.9e-218 762.3 401 92.8
Carub.0002s1819 Capsella rubella HOM05D005563 ORTHO05D006667 5.3e-213 744.2 401 90.0
Carub.0004s0662 Capsella rubella HOM05D005563 ORTHO05D006667 3.3e-207 724.9 387 90.7
CARHR064610 Cardamine hirsuta HOM05D005563 ORTHO05D006667 2.2e-203 712.2 415 85.3
Sp5g26490 Schrenkiella parvula HOM05D005563 ORTHO05D006667 7.6e-196 687.2 408 82.8
A07p30780 Brassica napus HOM05D005563 ORTHO05D006667 3.2e-194 681.8 406 82.0
Thhalv10018623m.g Eutrema salsugineum HOM05D005563 ORTHO05D006667 2.1e-193 679.1 402 82.6
BraA07t30715Z Brassica rapa HOM05D005563 ORTHO05D006667 2.5e-191 672.2 410 80.7
BcaB03g15600 Brassica carinata HOM05D005563 ORTHO05D006667 7.4e-191 670.6 409 80.2
C06p35680 Brassica napus HOM05D005563 ORTHO05D006667 2.4e-189 665.6 410 80.5
BcaC08g45784 Brassica carinata HOM05D005563 ORTHO05D006667 1.3e-187 659.8 410 80.0
BolC6t38691H Brassica oleracea HOM05D005563 ORTHO05D006667 1.7e-187 659.4 414 79.7
BcaB03g14889 Brassica carinata HOM05D005563 ORTHO05D006667 1.3e-184 649.8 413 78.0
Aa31LG4G9220 Aethionema arabicum HOM05D005563 ORTHO05D006667 4.2e-170 601.7 409 72.9
THA.LOC104825030 Tarenaya hassleriana HOM05D005563 ORTHO05D006667 1.5e-162 576.6 398 70.1
BcaB03g14888 Brassica carinata HOM05D005563 ORTHO05D006667 6.3e-142 508.1 371 71.2
FvH4_2g00270 Fragaria vesca HOM05D005563 ORTHO05D006667 8.6e-123 444.5 408 56.4
Prupe.8G002700 Prunus persica HOM05D005563 ORTHO05D006667 1.5e-122 443.7 410 54.9
RcHm_v2.0_Chr6g0249561 Rosa chinensis HOM05D005563 ORTHO05D006667 1.9e-122 443.4 415 55.7
Ciclev10020232m.g Citrus clementina HOM05D005563 ORTHO05D006667 4.3e-122 442.2 422 54.0
QL09p001227 Quercus lobata HOM05D005563 ORTHO05D006667 9.5e-122 441.0 413 56.7
CiPaw.04G008700 Carya illinoinensis HOM05D005563 ORTHO05D006667 1.1e-120 437.6 411 55.2
Dinv22054 Davidia involucrata HOM05D005563 ORTHO05D006667 1.1e-120 437.6 410 56.1
Cfa007306 Carpinus fangiana HOM05D005563 ORTHO05D006667 1.4e-120 437.2 416 55.8
Potri.013G094800 Populus trichocarpa HOM05D005563 ORTHO05D006667 8.9e-120 434.5 410 54.4
GSVIVG01037139001 Vitis vinifera HOM05D005563 ORTHO05D006667 5.8e-119 431.8 400 55.0
Actinidia29363 Actinidia chinensis HOM05D005563 ORTHO05D006667 4.9e-118 428.7 412 55.1
FAN24G3564 Fragaria x ananassa HOM05D005563 ORTHO05D006667 1.4e-117 427.2 427 53.4
Sabra13G0080900 Salix brachista HOM05D005563 ORTHO05D006667 1.9e-117 426.8 409 54.5
Thecc.05G149300 Theobroma cacao HOM05D005563 ORTHO05D006667 3.2e-117 426.0 417 53.7
PGR044G0823 Punica granatum HOM05D005563 ORTHO05D006667 1.6e-116 423.7 417 54.7
arahy.Tifrunner.gnm1.ann1.QV839S Arachis hypogaea HOM05D005563 ORTHO05D006667 2.1e-116 423.3 419 53.9
Lalb_Chr24g0393341 Lupinus albus HOM05D005563 ORTHO05D006667 2.1e-116 423.3 413 55.4
Nn5g27214 Nelumbo nucifera HOM05D005563 ORTHO05D006667 2.1e-116 423.3 415 54.7
MD10G1001500 Malus domestica HOM05D005563 ORTHO05D006667 4.6e-116 422.2 416 54.1
TAR628G0232 Trochodendron aralioides HOM05D005563 ORTHO05D006667 7.8e-116 421.4 412 52.9
Lj3g0011209 Lotus japonicus HOM05D005563 ORTHO05D006667 2.3e-115 419.9 408 54.9
Glyma.13G312100 Glycine max HOM05D005563 ORTHO05D006667 3.9e-115 419.1 409 54.3
CSS0040007 Camellia sinensis var. sinensis HOM05D005563 ORTHO05D006667 5.1e-115 418.7 412 54.1
DCAR_001180 Daucus carota HOM05D005563 ORTHO05D006667 9.5e-114 414.5 407 52.8
CSS0002080 Camellia sinensis var. sinensis HOM05D005563 ORTHO05D006667 1.2e-113 414.1 412 53.6
Duzib177G0343 Durio zibethinus HOM05D005563 ORTHO05D006667 1.2e-113 414.1 404 54.5
DCAR_010113 Daucus carota HOM05D005563 ORTHO05D006667 1.6e-113 413.7 407 53.3
Atru.chr13.2584 Acer truncatum HOM05D005563 ORTHO05D006667 4.7e-113 412.1 412 53.4
ECA232G0495 Erigeron canadensis HOM05D004116 ORTHO05D004734 4.7e-113 412.1 392 55.1
Rhsim01G0058900 Rhododendron simsii HOM05D005563 ORTHO05D006667 6.2e-113 411.8 412 54.4
TPR.G23443 Trifolium pratense HOM05D005563 ORTHO05D006667 6.2e-113 411.8 419 52.0
VMungo1080G1448 Vigna mungo HOM05D005563 ORTHO05D006667 4.0e-112 409.1 405 54.8
Rhsim01G0059200 Rhododendron simsii HOM05D005563 ORTHO05D006667 6.8e-112 408.3 416 53.4
vmacro07741 Vaccinium macrocarpon HOM05D005563 ORTHO05D006667 6.8e-112 408.3 421 53.2
Oeu019017.1 Olea europaea HOM05D005563 ORTHO05D006667 1.5e-111 407.1 410 52.9
CANSAT64G1925 Cannabis sativa HOM05D005563 ORTHO05D006667 2.0e-111 406.8 413 52.8
Gorai.009G262600 Gossypium raimondii HOM05D005563 ORTHO05D006667 3.4e-111 406.0 409 52.6
Phvul.005G118600 Phaseolus vulgaris HOM05D005563 ORTHO05D006667 4.4e-111 405.6 407 53.3
Oeu009445.1 Olea europaea HOM05D005563 ORTHO05D006667 2.2e-110 403.3 418 51.9
Medtr8g103020 Medicago truncatula HOM05D005563 ORTHO05D006667 4.9e-110 402.1 418 52.4
Cc02_g22680 Coffea canephora HOM05D005563 ORTHO05D006667 1.4e-109 400.6 411 51.8
Aqoxy1G00244 Aquilegia oxysepala HOM05D005563 ORTHO05D006667 3.2e-109 399.4 409 51.3
Migut.G00338 Erythranthe guttata HOM05D005563 ORTHO05D006667 3.2e-109 399.4 403 53.3
BolC6t39597H Brassica oleracea HOM05D005563 ORTHO05D006667 1.2e-108 397.5 354 60.7
ClCG11G000440 Citrullus lanatus HOM05D005563 ORTHO05D006667 2.1e-108 396.7 422 51.2
Nitab4.5_0006591g0020 Nicotiana tabacum HOM05D005563 ORTHO05D006667 2.1e-108 396.7 401 53.4
Haze_14007 Corylus avellana HOM05D005563 ORTHO05D006667 7.8e-108 394.8 523 44.2
DCAR_027509 Daucus carota HOM05D005563 ORTHO05D006667 1.7e-107 393.7 409 51.8
CAN.G587.23 Capsicum annuum HOM05D005563 ORTHO05D006667 3.9e-107 392.5 401 52.4
CAN.G769.9 Capsicum annuum HOM05D005563 ORTHO05D006667 2.1e-105 386.7 401 52.4
PSO761G0451 Papaver somniferum HOM05D005563 ORTHO05D006667 2.1e-105 386.7 418 49.0
Psat7g014680 Pisum sativum HOM05D005563 ORTHO05D006667 4.0e-104 382.5 433 48.5
Hund26934 Selenicereus undatus HOM05D005563 ORTHO05D006667 6.9e-104 381.7 418 48.6
SGA_v2.0_scaffold277G46672 Striga asiatica HOM05D005563 ORTHO05D006667 2.0e-103 380.2 391 53.2
CsaV3_6G042510 Cucumis sativus L. HOM05D005563 ORTHO05D006667 7.6e-103 378.3 414 51.4
Lsat_1_v5_gn_4_170241 Lactuca sativa HOM05D005563 ORTHO05D006667 7.6e-103 378.3 396 51.5
MBI14_g08074_MAGBIO Magnolia biondii HOM05D005563 ORTHO05D006667 9.9e-103 377.9 388 51.5
Eucgr.G00337 Eucalyptus grandis HOM05D005563 ORTHO05D006667 1.3e-102 377.5 400 52.5
Solyc03g026100.1 Solanum lycopersicum HOM05D005563 ORTHO05D006667 1.7e-102 377.1 401 51.1
Sopen03g004940 Solanum pennellii HOM05D005563 ORTHO05D006667 4.9e-102 375.6 391 52.2
PGSC0003DMG400014277 Solanum tuberosum HOM05D005563 ORTHO05D006667 2.4e-101 373.2 402 51.2
PSO170G2533 Papaver somniferum HOM05D005563 ORTHO05D006667 5.4e-101 372.1 392 49.7
PSO017G5640 Papaver somniferum HOM05D005563 ORTHO05D006667 1.1e-98 364.4 408 49.8
HanXRQChr15g0488461 Helianthus annuus HOM05D005563 ORTHO05D006667 1.1e-96 357.8 340 54.4
Manes.18G108800 Manihot esculenta HOM05D005563 ORTHO05D006667 1.8e-96 357.1 344 54.4
arahy.Tifrunner.gnm1.ann1.NB4SND Arachis hypogaea HOM05D005563 ORTHO05D006667 1.2e-95 354.4 437 47.6
PSO407G0243 Papaver somniferum HOM05D005563 ORTHO05D006667 1.2e-95 354.4 396 49.0
TAR633G2728 Trochodendron aralioides HOM05D005563 ORTHO05D006667 9.3e-93 344.7 350 51.1
TWI18G0160 Tripterygium wilfordii HOM05D005563 ORTHO05D006667 6.7e-91 338.6 412 47.8
Nitab4.5_0001489g0080 Nicotiana tabacum HOM05D005563 ORTHO05D006667 1.9e-90 337.0 358 51.1
AUR62023340 Chenopodium quinoa HOM05D005563 ORTHO05D006667 2.4e-88 330.1 408 47.3
ATR0580G344 Amborella trichopoda HOM05D005563 ORTHO05D006667 1.7e-86 323.9 413 45.5
Nitab4.5_0000079g0140 Nicotiana tabacum HOM05D005563 ORTHO05D006667 1.4e-85 320.9 395 46.3
Sed0012109 Sechium edule HOM05D005563 ORTHO05D006667 9.3e-85 318.2 329 52.6
Peaxi162Scf00078g01133 Petunia axillaris HOM05D005563 ORTHO05D006667 1.6e-84 317.4 345 49.9
AUR62013814 Chenopodium quinoa HOM05D005563 ORTHO05D006667 5.1e-83 312.4 496 40.3
unitig_32.g10817 Utricularia gibba HOM05D005563 ORTHO05D006667 3.7e-81 306.2 375 47.5
MELO3C022956.2 Cucumis melo HOM05D005563 ORTHO05D006667 1.7e-78 297.4 362 48.6
Gohir.A05G248000 Gossypium hirsutum HOM05D005563 ORTHO05D006667 9.6e-74 281.6 321 48.0
FAN19G1429 Fragaria x ananassa HOM05D005563 ORTHO05D006667 1.8e-72 277.3 434 42.2
TPR.G11352 Trifolium pratense HOM05D005563 ORTHO05D006667 4.1e-72 276.2 310 49.4
Gohir.D05G248801 Gossypium hirsutum HOM05D005563 ORTHO05D006667 5.9e-71 272.3 322 47.2
AUR62037990 Chenopodium quinoa HOM05D005563 ORTHO05D006667 1.4e-69 267.7 298 48.0
Eucgr.C03620 Eucalyptus grandis HOM05D005563 ORTHO05D006667 5.5e-69 265.8 286 49.7
EL10Ac1g00691 Beta vulgaris HOM05D005563 ORTHO05D006667 3.3e-66 256.5 359 42.9
Sc19g0006900 Simmondsia chinensis HOM05D005563 ORTHO05D006667 1.3e-65 254.6 310 43.9
COL.COLO4_34067 Corchorus olitorius HOM05D005563 ORTHO05D006667 8.5e-62 241.9 314 46.5
Pp3c5_5220 Physcomitrium patens HOM05D005563 ORTHO05D006667 2.9e-54 216.9 377 35.5
SMO356G0078 Selaginella moellendorffii HOM05D005563 ORTHO05D006667 3.8e-54 216.5 395 35.2
Cpa.g.sc249.8 Carica papaya HOM05D005563 ORTHO05D006667 8.5e-54 215.3 165 61.8
CDE04G2046 Ceratophyllum demersum HOM05D005563 ORTHO05D006667 1.9e-53 214.2 251 46.2
Mapoly0019s0003 Marchantia polymorpha HOM05D005563 ORTHO05D006667 4.2e-53 213.0 410 35.6
C06p46160 Brassica napus HOM05D005563 ORTHO05D006667 4.7e-52 209.5 192 63.0
AagrBONN_evm.TU.Sc2ySwM_344.1216 Anthoceros agrestis HOM05D005563 ORTHO05D006667 1.4e-51 208.0 466 33.5
Ca_17321_v3 Cicer arietinum L. HOM05D005563 ORTHO05D006667 1.1e-50 204.9 317 42.3
SHI17431 Sapria himalayana HOM05D005563 ORTHO05D006667 4.4e-50 203.0 259 45.2
HPP92_009712 Vanilla planifolia HOM05D005563 ORTHO05D006667 2.6e-47 193.7 244 46.3
Zm00001eb088860 Zea mays HOM05D005563 ORTHO05D006667 2.6e-47 193.7 261 43.7
MBI14_g20078_MAGBIO Magnolia biondii HOM05D005563 ORTHO05D006667 3.7e-33 146.7 78 82.1
MCO11G544 Micromonas commoda HOM05D005563 ORTHO05D006667 3.7e-33 146.7 346 30.6
MBI13_g08747_MAGBIO Magnolia biondii HOM05D005563 ORTHO05D006667 1.8e-32 144.4 108 63.0
Eucgr.C03478 Eucalyptus grandis HOM05D005563 ORTHO05D006667 1.2e-31 141.7 182 44.5
MBI15_g36474_MAGBIO Magnolia biondii HOM05D005563 ORTHO05D006667 1.2e-31 141.7 78 79.5
TPR.G11340 Trifolium pratense HOM05D005563 ORTHO05D006667 2.7e-31 140.6 72 86.1
MBI08_g10505_MAGBIO Magnolia biondii HOM05D000152 ORTHO05D006667 7.7e-31 139.0 70 87.1
Actinidia03534 Actinidia chinensis HOM05D005563 ORTHO05D006667 4.2e-29 133.3 224 37.5
Eucgr.C03640 Eucalyptus grandis HOM05D005563 ORTHO05D006667 6.1e-28 129.4 77 75.3
Eucgr.L00998 Eucalyptus grandis HOM05D005563 ORTHO05D006667 2.3e-22 110.9 202 37.1
CBR_g50242 Chara braunii HOM05D005563 ORTHO05D006667 5.0e-22 109.8 592 22.0
Thecc.10G189600 Theobroma cacao HOM05D005563 ORTHO05D006667 1.2e-20 105.1 119 49.6
FAN20G2324 Fragaria x ananassa HOM05D005563 ORTHO05D006667 2.1e-20 104.4 56 78.6
CBR_g8323 Chara braunii HOM05D005563 ORTHO05D006667 1.2e-18 98.6 168 36.9
Cre10.g439200 Chlamydomonas reinhardtii HOM05D005563 ORTHO05D006667 3.4e-18 97.1 435 25.1
DCAR_001179 Daucus carota HOM05D005563 ORTHO05D006667 4.4e-18 96.7 190 34.7
PRCOL_00003298 Prasinoderma coloniale HOM05D005563 ORTHO05D006667 6.2e-12 76.3 146 34.2
SHI17433 Sapria himalayana HOM05D005563 ORTHO05D006667 1.1e-08 65.5 58 51.7
Eucgr.C03636 Eucalyptus grandis HOM05D005563 ORTHO05D006667 5.4e-08 63.2 161 34.8
Thecc.10G189700 Theobroma cacao HOM05D005563 ORTHO05D006667 3.5e-07 60.5 115 36.5


User provided reference genes

Program Settings