Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G30760 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 4.9e-202 707.6 360 100.0
AT1G71150 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 1.5e-166 589.7 361 85.9
Carub.0002s1804 Capsella rubella HOM05D005473 ORTHO05D006543 1.3e-149 533.5 361 77.8
Sp5g26320 Schrenkiella parvula HOM05D005473 ORTHO05D006543 7.7e-147 524.2 364 76.9
CARHR064450 Cardamine hirsuta HOM05D005473 ORTHO05D006543 1.0e-146 523.9 362 75.4
BraA07t31315Z Brassica rapa HOM05D005473 ORTHO05D006543 4.4e-142 508.4 363 74.1
AL1G36530 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 2.2e-133 479.6 359 69.9
Carub.0001s2247 Capsella rubella HOM05D005473 ORTHO05D006543 5.3e-132 474.9 359 68.8
Aa31LG7G6980 Aethionema arabicum HOM05D005473 ORTHO05D006543 2.0e-131 473.0 365 67.9
CARHR023350 Cardamine hirsuta HOM05D005473 ORTHO05D006543 6.1e-128 461.5 359 68.2
AT1G22970 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 2.3e-127 459.5 360 67.5
BcaC08g46554 Brassica carinata HOM05D005473 ORTHO05D006543 1.2e-126 457.2 352 71.0
Thhalv10008033m.g Eutrema salsugineum HOM05D005473 ORTHO05D006543 1.2e-126 457.2 359 67.4
BcaB07g32295 Brassica carinata HOM05D005473 ORTHO05D006543 6.3e-125 451.4 361 67.9
A09p41740 Brassica napus HOM05D005473 ORTHO05D006543 1.4e-124 450.3 359 66.6
BolC6t39580H Brassica oleracea HOM05D005473 ORTHO05D006543 1.4e-124 450.3 347 70.3
BraA09t39663Z Brassica rapa HOM05D005473 ORTHO05D006543 2.4e-124 449.5 359 66.0
BcaB03g14874 Brassica carinata HOM05D005473 ORTHO05D006543 1.3e-122 443.7 318 74.2
C05p22180 Brassica napus HOM05D005473 ORTHO05D006543 1.6e-120 436.8 362 64.4
Sp1g20430 Schrenkiella parvula HOM05D005473 ORTHO05D006543 1.5e-118 430.3 359 64.6
BcaC05g26209 Brassica carinata HOM05D005473 ORTHO05D006543 2.0e-115 419.9 362 62.4
BolC5t30918H Brassica oleracea HOM05D005473 ORTHO05D006543 3.5e-115 419.1 362 62.2
THA.LOC104812031 Tarenaya hassleriana HOM05D005473 ORTHO05D006543 3.0e-111 406.0 298 69.8
A07p37530 Brassica napus HOM05D000048 ORTHO05D006543 4.0e-111 405.6 361 62.3
Cpa.g.sc65.93 Carica papaya HOM05D005473 ORTHO05D006543 4.0e-111 405.6 358 60.9
QL01p003042 Quercus lobata HOM05D005473 ORTHO05D006543 1.9e-105 386.7 364 56.6
Gorai.009G342800 Gossypium raimondii HOM05D005473 ORTHO05D006543 2.5e-105 386.3 362 55.8
Gohir.D05G319500 Gossypium hirsutum HOM05D005473 ORTHO05D006543 1.0e-103 380.9 362 55.5
Thecc.02G215500 Theobroma cacao HOM05D005473 ORTHO05D006543 2.3e-103 379.8 364 55.2
COL.COLO4_20121 Corchorus olitorius HOM05D005473 ORTHO05D006543 2.0e-102 376.7 362 54.7
Dinv04903 Davidia involucrata HOM05D005473 ORTHO05D006543 4.4e-102 375.6 362 56.6
GSVIVG01011804001 Vitis vinifera HOM05D005473 ORTHO05D006543 2.9e-101 372.9 362 55.2
CiPaw.05G245400 Carya illinoinensis HOM05D005473 ORTHO05D006543 1.1e-100 370.9 365 54.5
TAR622G1045 Trochodendron aralioides HOM05D005473 ORTHO05D006543 1.4e-100 370.5 366 55.2
Gohir.A05G317600 Gossypium hirsutum HOM05D005473 ORTHO05D006543 7.0e-100 368.2 362 54.7
Thhalv10018995m.g Eutrema salsugineum HOM05D005473 ORTHO05D006543 1.2e-99 367.5 273 76.2
Atru.chr11.335 Acer truncatum HOM05D005473 ORTHO05D006543 7.8e-99 364.8 360 53.9
Potri.008G126400 Populus trichocarpa HOM05D005473 ORTHO05D006543 3.0e-98 362.8 363 53.7
Prupe.1G320100 Prunus persica HOM05D005473 ORTHO05D006543 6.6e-98 361.7 364 53.0
Ca_30210_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 8.6e-98 361.3 362 52.8
Sabra08G0095200 Salix brachista HOM05D005473 ORTHO05D006543 1.1e-97 360.9 359 54.6
Lj5g0028089 Lotus japonicus HOM05D005473 ORTHO05D006543 1.9e-97 360.1 364 52.2
Sabra16G0274100 Salix brachista HOM05D005473 ORTHO05D006543 1.9e-97 360.1 359 54.6
Ciclev10015542m.g Citrus clementina HOM05D005473 ORTHO05D006543 3.3e-97 359.4 358 53.6
CSS0031478 Camellia sinensis var. sinensis HOM05D005473 ORTHO05D006543 5.6e-97 358.6 358 53.6
SalBow8G1667 Salvia bowleyana HOM05D005473 ORTHO05D006543 1.2e-96 357.5 362 51.7
FAN17G2750 Fragaria x ananassa HOM05D005473 ORTHO05D006543 2.1e-96 356.7 359 52.6
Manes.14G109600 Manihot esculenta HOM05D005473 ORTHO05D006543 8.1e-96 354.8 364 53.6
RcHm_v2.0_Chr4g0434011 Rosa chinensis HOM05D005473 ORTHO05D006543 1.1e-95 354.4 359 52.6
FvH4_4g26380 Fragaria vesca HOM05D005473 ORTHO05D006543 2.3e-95 353.2 359 52.1
Hma1.2p1_0114F.1_g055460 Hydrangea macrophylla HOM05D005473 ORTHO05D006543 2.3e-95 353.2 362 53.0
Cfa015813 Carpinus fangiana HOM05D000048 ORTHO05D000207 3.1e-95 352.8 366 53.3
FAN12G0751 Fragaria x ananassa HOM05D005473 ORTHO05D006543 3.1e-95 352.8 359 52.1
FAN12G1468 Fragaria x ananassa HOM05D005473 ORTHO05D006543 3.1e-95 352.8 359 52.1
FAN22G1873 Fragaria x ananassa HOM05D005473 ORTHO05D006543 6.8e-95 351.7 359 52.1
Atru.chr11.342 Acer truncatum HOM05D005473 ORTHO05D006543 3.4e-94 349.4 341 55.1
AT1G22980 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 3.4e-94 349.4 358 55.0
MSTRG.875 Avicennia marina HOM05D005473 ORTHO05D006543 9.8e-94 347.8 362 51.9
FAN07G2597 Fragaria x ananassa HOM05D005473 ORTHO05D006543 9.8e-94 347.8 342 54.7
vmacro01424 Vaccinium macrocarpon HOM05D005473 ORTHO05D006543 1.3e-93 347.4 366 51.1
TPR.G4908 Trifolium pratense HOM05D005473 ORTHO05D006543 2.2e-93 346.7 359 52.4
Medtr1g109070 Medicago truncatula HOM05D005473 ORTHO05D006543 8.3e-93 344.7 361 50.7
Haze_00685 Corylus avellana HOM05D005473 ORTHO05D006543 1.1e-92 344.4 406 48.3
Lalb_Chr06g0165731 Lupinus albus HOM05D005473 ORTHO05D006543 1.1e-92 344.4 358 51.1
Cc11_g09260 Coffea canephora HOM05D005473 ORTHO05D006543 4.1e-92 342.4 358 52.5
Psat6g222680 Pisum sativum HOM05D005473 ORTHO05D006543 5.4e-92 342.0 360 50.6
arahy.Tifrunner.gnm1.ann1.45PR62 Arachis hypogaea HOM05D005473 ORTHO05D006543 7.1e-92 341.7 363 50.4
CAN.G1489.13 Capsicum annuum HOM05D005473 ORTHO05D006543 9.2e-92 341.3 364 51.9
Phvul.007G034400 Phaseolus vulgaris HOM05D005473 ORTHO05D006543 1.2e-91 340.9 368 49.7
VMungo0720G0454 Vigna mungo HOM05D005473 ORTHO05D006543 1.2e-91 340.9 363 48.5
arahy.Tifrunner.gnm1.ann1.GULV0C Arachis hypogaea HOM05D005473 ORTHO05D006543 1.6e-91 340.5 363 50.1
AL1G36540 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 6.0e-91 338.6 346 55.8
Eucgr.K00649 Eucalyptus grandis HOM05D005473 ORTHO05D006543 1.0e-90 337.8 360 49.2
Glyma.20G123200 Glycine max HOM05D005473 ORTHO05D006543 2.3e-90 336.7 364 49.7
Nn4g24024 Nelumbo nucifera HOM05D005473 ORTHO05D006543 5.1e-90 335.5 365 49.9
AUR62002772 Chenopodium quinoa HOM05D005473 ORTHO05D006543 4.3e-89 332.4 356 51.4
Lj3A877T94 Lonicera japonica HOM05D005473 ORTHO05D006543 9.5e-89 331.3 399 48.1
Migut.L01020 Erythranthe guttata HOM05D005473 ORTHO05D006543 1.2e-88 330.9 357 51.3
AUR62037258 Chenopodium quinoa HOM05D005473 ORTHO05D006543 1.6e-88 330.5 357 51.5
PGSC0003DMG400030516 Solanum tuberosum HOM05D005473 ORTHO05D006543 4.7e-88 328.9 359 50.7
CsaV3_5G034770 Cucumis sativus L. HOM05D005473 ORTHO05D006543 1.4e-87 327.4 365 50.7
Lsat_1_v5_gn_3_54040 Lactuca sativa HOM05D005473 ORTHO05D006543 3.1e-87 326.2 365 47.9
Sed0015008 Sechium edule HOM05D005473 ORTHO05D006543 3.1e-87 326.2 362 50.3
PGR119G2355 Punica granatum HOM05D005473 ORTHO05D006543 4.0e-87 325.9 366 49.2
Actinidia31990 Actinidia chinensis HOM05D005473 ORTHO05D006543 5.2e-87 325.5 322 55.3
Solyc05g008520.3 Solanum lycopersicum HOM05D005473 ORTHO05D006543 6.8e-87 325.1 359 50.4
ClCG05G022330 Citrullus lanatus HOM05D005473 ORTHO05D006543 8.9e-87 324.7 365 50.4
EL10Ac6g14276 Beta vulgaris HOM05D005473 ORTHO05D006543 2.0e-86 323.6 374 48.7
Sopen05g004360 Solanum pennellii HOM05D005473 ORTHO05D006543 2.6e-86 323.2 359 50.4
ECA246G4292 Erigeron canadensis HOM05D005473 ORTHO05D006543 5.8e-86 322.0 370 48.4
Oeu059511.2 Olea europaea HOM05D005473 ORTHO05D006543 7.6e-86 321.6 347 49.6
Rhsim12G0088500 Rhododendron simsii HOM05D005473 ORTHO05D006543 7.6e-86 321.6 425 44.5
Peaxi162Scf00205g01024 Petunia axillaris HOM05D000048 ORTHO05D006543 1.7e-85 320.5 338 52.1
CANSAT01G2653 Cannabis sativa HOM05D005473 ORTHO05D006543 2.9e-85 319.7 360 48.9
HanXRQChr15g0477691 Helianthus annuus HOM05D005473 ORTHO05D006543 5.4e-84 315.5 369 46.9
PSO017G4790 Papaver somniferum HOM05D005473 ORTHO05D006543 5.4e-84 315.5 361 48.8
Sc11g0003970 Simmondsia chinensis HOM05D005473 ORTHO05D006543 2.7e-83 313.2 347 49.6
SGA_v2.0_scaffold50G18546 Striga asiatica HOM05D005473 ORTHO05D006543 3.0e-82 309.7 343 49.0
Ca_23703_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 8.6e-82 308.1 362 46.7
Ah.03g138500 Amaranthus hybridus HOM05D005473 ORTHO05D006543 9.6e-81 304.7 340 49.1
Aqoxy5G03875 Aquilegia oxysepala HOM05D005473 ORTHO05D006543 1.1e-79 301.2 357 46.2
Dinv16166 Davidia involucrata HOM05D005473 ORTHO05D006543 1.4e-79 300.8 357 47.1
PSO478G0709 Papaver somniferum HOM05D005473 ORTHO05D006543 6.8e-79 298.5 365 47.1
PSO782G5692 Papaver somniferum HOM05D005473 ORTHO05D006543 1.2e-78 297.7 365 46.6
MBI16_g29822_MAGBIO Magnolia biondii HOM05D005473 ORTHO05D006543 9.9e-78 294.7 370 46.5
Nitab4.5_0013146g0010 Nicotiana tabacum HOM05D005473 ORTHO05D006543 4.2e-76 289.3 304 53.0
CDE07G0910 Ceratophyllum demersum HOM05D005473 ORTHO05D006543 2.7e-75 286.6 359 44.8
Potri.010G117100 Populus trichocarpa HOM05D005473 ORTHO05D006543 4.6e-75 285.8 302 52.3
HPP92_020137 Vanilla planifolia HOM05D005473 ORTHO05D006543 7.8e-75 285.0 350 45.4
DCAR_023622 Daucus carota HOM05D005473 ORTHO05D006543 5.1e-74 282.3 268 57.8
Duzib268G1740 Durio zibethinus HOM05D005473 ORTHO05D006543 4.3e-73 279.3 281 54.4
MELO3C012289.2 Cucumis melo HOM05D005473 ORTHO05D006543 6.2e-72 275.4 307 51.5
TWI79G1332 Tripterygium wilfordii HOM05D005473 ORTHO05D006543 1.7e-69 267.3 354 45.8
unitig_749.g14005 Utricularia gibba HOM05D005473 ORTHO05D006543 1.9e-68 263.8 286 50.3
A01p19890 Brassica napus HOM05D005473 ORTHO05D006543 3.2e-68 263.1 236 61.4
ATR0691G101 Amborella trichopoda HOM05D005473 ORTHO05D006543 9.3e-68 261.5 369 42.5
Os05g0554500 Oryza sativa ssp. japonica HOM05D005473 ORTHO05D006543 3.0e-66 256.5 362 42.3
Zm00001eb295130 Zea mays HOM05D005473 ORTHO05D006543 6.6e-66 255.4 368 41.0
Thecc.02G215400 Theobroma cacao HOM05D005473 ORTHO05D006543 7.9e-59 231.9 237 51.9
C06p45250 Brassica napus HOM05D005473 ORTHO05D006543 2.8e-56 223.4 186 67.7
SEGI_09717 Sequoiadendron giganteum HOM05D005473 ORTHO05D006543 2.4e-55 220.3 340 39.7
C06p45240 Brassica napus HOM05D000048 ORTHO05D000207 1.3e-48 198.0 124 79.0
Glyma.10G267900 Glycine max HOM05D005473 ORTHO05D006543 1.6e-48 197.6 246 45.5
HanXRQChr15g0477701 Helianthus annuus HOM05D005473 ORTHO05D006543 2.1e-48 197.2 349 36.1
Migut.O00950 Erythranthe guttata HOM05D005473 ORTHO05D006543 2.8e-48 196.8 230 50.4
Duzib251G0055 Durio zibethinus HOM05D005473 ORTHO05D006543 5.3e-47 192.6 274 43.4
Actinidia33629 Actinidia chinensis HOM05D005473 ORTHO05D006543 2.9e-45 186.8 240 47.5
SMO202G0044 Selaginella moellendorffii HOM05D005473 ORTHO05D006543 9.3e-44 181.8 317 38.2
PSO384G2466 Papaver somniferum HOM05D005473 ORTHO05D006543 1.0e-37 161.8 301 36.5
Rhsim03G0134600 Rhododendron simsii HOM05D005473 ORTHO05D006543 5.0e-37 159.5 236 42.8
AagrBONN_evm.TU.Sc2ySwM_344.5342 Anthoceros agrestis HOM05D005473 ORTHO05D006543 3.7e-32 143.3 340 27.4
Pp3c15_5840 Physcomitrium patens HOM05D005473 ORTHO05D006543 1.1e-31 141.7 428 26.6
Hund25017 Selenicereus undatus HOM05D005473 ORTHO05D006543 1.1e-23 115.2 132 47.7
PSO339G4228 Papaver somniferum HOM05D005473 ORTHO05D006543 4.1e-23 113.2 364 27.2
Oeu036129.1 Olea europaea HOM05D005473 ORTHO05D006543 9.1e-23 112.1 148 47.3
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 3.8e-21 106.7 246 31.7
MCO05G366 Micromonas commoda HOM05D005473 ORTHO05D006543 2.2e-13 80.9 295 24.4
PGR142G1573 Punica granatum HOM05D005473 ORTHO05D006543 1.1e-12 78.6 266 27.4
CAN.G572.16 Capsicum annuum HOM05D005473 ORTHO05D006543 7.0e-07 59.3 81 39.5
MSTRG.15906 Avicennia marina HOM05D005473 ORTHO05D006543 7.7e-06 55.8 55 40.0


User provided reference genes

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