Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G29670 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 6.3e-100 367.5 188 100.0
AT1G70360 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 5.9e-74 281.2 183 81.4
Carub.0002s1705 Capsella rubella HOM05D003497 ORTHO05D003964 1.0e-54 217.2 194 61.9
Aa31LG7G7660 Aethionema arabicum HOM05D003497 ORTHO05D003964 5.9e-50 201.4 199 56.8
A07p13790 Brassica napus HOM05D003497 ORTHO05D003964 1.7e-49 199.9 195 56.9
Sp1g21160 Schrenkiella parvula HOM05D003497 ORTHO05D003964 5.0e-49 198.4 196 55.6
BcaB03g14136 Brassica carinata HOM05D003497 ORTHO05D003964 6.6e-49 198.0 196 56.6
C07p20260 Brassica napus HOM05D003497 ORTHO05D003964 1.9e-48 196.4 195 56.4
BraA07t29128Z Brassica rapa HOM05D003497 ORTHO05D003964 2.5e-48 196.1 195 56.4
BcaC06g35052 Brassica carinata HOM05D003497 ORTHO05D003964 3.3e-48 195.7 195 55.9
BolC7t42548H Brassica oleracea HOM05D003497 ORTHO05D003964 3.3e-48 195.7 195 55.9
Carub.0001s2329 Capsella rubella HOM05D003497 ORTHO05D003964 1.8e-46 189.9 196 54.6
AL1G37530 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 4.0e-46 188.7 196 54.1
Thhalv10009461m.g Eutrema salsugineum HOM05D003497 ORTHO05D003964 4.0e-46 188.7 196 54.6
AT1G23780 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 1.3e-44 183.7 196 53.1
CARHR164020 Cardamine hirsuta HOM05D003497 ORTHO05D003964 3.7e-44 182.2 199 54.8
CARHR024190 Cardamine hirsuta HOM05D003497 ORTHO05D003964 1.9e-43 179.9 197 50.8
THA.LOC104824678 Tarenaya hassleriana HOM05D003497 ORTHO05D003964 5.4e-43 178.3 200 51.5
THA.LOC104822142 Tarenaya hassleriana HOM05D003497 ORTHO05D003964 7.0e-43 177.9 198 51.5
Carub.0001s2328 Capsella rubella HOM05D003497 ORTHO05D003964 1.6e-42 176.8 197 50.8
AL1G37520 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 1.0e-41 174.1 197 50.3
AT1G23770 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 2.3e-41 172.9 197 49.7
Sp7g01980 Schrenkiella parvula HOM05D003497 ORTHO05D003964 3.0e-41 172.6 195 48.7
BcaB03g11953 Brassica carinata HOM05D003497 ORTHO05D003964 5.0e-41 171.8 184 54.9
CARHR164040 Cardamine hirsuta HOM05D003497 ORTHO05D003964 2.5e-40 169.5 200 52.5
A04p15640 Brassica napus HOM05D003497 ORTHO05D003964 7.5e-37 157.9 195 45.6
C04p49930 Brassica napus HOM05D003497 ORTHO05D003964 9.9e-37 157.5 195 46.7
BcaB06g27743 Brassica carinata HOM05D003497 ORTHO05D003964 2.2e-36 156.4 195 46.7
BraA04t17199Z Brassica rapa HOM05D003497 ORTHO05D003964 4.9e-36 155.2 195 46.2
BolC4t26586H Brassica oleracea HOM05D003497 ORTHO05D003964 8.3e-36 154.5 195 46.2
BcaC02g08840 Brassica carinata HOM05D003497 ORTHO05D003964 1.5e-32 143.7 194 44.3
Gorai.013G052000 Gossypium raimondii HOM05D003497 ORTHO05D003964 9.5e-32 141.0 204 43.1
Lj5g0015963 Lotus japonicus HOM05D003497 ORTHO05D003964 2.8e-31 139.4 198 41.9
Gohir.D13G046300 Gossypium hirsutum HOM05D003497 ORTHO05D003964 1.4e-30 137.1 204 42.6
Nitab4.5_0000003g0710 Nicotiana tabacum HOM05D003497 ORTHO05D003964 1.4e-30 137.1 190 43.2
GSVIVG01037051001 Vitis vinifera HOM05D003497 ORTHO05D003964 2.4e-30 136.3 210 45.2
Phvul.007G047200 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 3.1e-30 136.0 198 40.9
Haze_10291 Corylus avellana HOM05D003497 ORTHO05D003964 5.2e-30 135.2 197 43.1
Gohir.A13G047900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 6.8e-30 134.8 204 42.6
HanXRQChr16g0502181 Helianthus annuus HOM05D003497 ORTHO05D003964 6.8e-30 134.8 192 43.8
Migut.B00464 Erythranthe guttata HOM05D003497 ORTHO05D003964 8.9e-30 134.4 200 45.0
Nn6g34530 Nelumbo nucifera HOM05D003497 ORTHO05D003964 8.9e-30 134.4 198 41.9
Sed0023460 Sechium edule HOM05D003497 ORTHO05D003964 1.5e-29 133.7 199 42.7
QL11p029247 Quercus lobata HOM05D003497 ORTHO05D003964 2.6e-29 132.9 208 40.4
Eucgr.G00280 Eucalyptus grandis HOM05D003497 ORTHO05D003964 4.4e-29 132.1 210 41.0
TPR.G21155 Trifolium pratense HOM05D003497 ORTHO05D003964 4.4e-29 132.1 198 41.4
arahy.Tifrunner.gnm1.ann1.6MCD86 Arachis hypogaea HOM05D003497 ORTHO05D003964 7.6e-29 131.3 203 40.4
VMungo0720G1031 Vigna mungo HOM05D003497 ORTHO05D003964 7.6e-29 131.3 199 42.2
Lsat_1_v5_gn_5_117220 Lactuca sativa HOM05D003497 ORTHO05D003964 9.9e-29 131.0 206 41.7
Lalb_Chr06g0164971 Lupinus albus HOM05D003497 ORTHO05D003964 1.3e-28 130.6 192 43.8
Glyma.20G135900 Glycine max HOM05D003497 ORTHO05D003964 1.7e-28 130.2 198 40.4
Nn3g19312 Nelumbo nucifera HOM05D003497 ORTHO05D003964 1.7e-28 130.2 198 40.9
Cc02_g20070 Coffea canephora HOM05D003497 ORTHO05D003964 2.2e-28 129.8 202 41.6
Eucgr.I02495 Eucalyptus grandis HOM05D003497 ORTHO05D003964 2.2e-28 129.8 210 40.0
Nitab4.5_0003918g0020 Nicotiana tabacum HOM05D003497 ORTHO05D003964 2.2e-28 129.8 193 40.9
PGSC0003DMG400021329 Solanum tuberosum HOM05D003497 ORTHO05D003964 2.9e-28 129.4 196 41.3
Glyma.10G255600 Glycine max HOM05D003497 ORTHO05D003964 3.8e-28 129.0 198 40.4
Sopen01g002980 Solanum pennellii HOM05D003497 ORTHO05D003964 4.9e-28 128.6 199 40.7
CSS0013739 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 8.4e-28 127.9 198 41.4
TAR381G0023 Trochodendron aralioides HOM05D003497 ORTHO05D003964 8.4e-28 127.9 200 44.0
AUR62027025 Chenopodium quinoa HOM05D003497 ORTHO05D003964 1.1e-27 127.5 210 41.0
Medtr1g106020 Medicago truncatula HOM05D003497 ORTHO05D003964 1.1e-27 127.5 207 39.6
CAN.G911.43 Capsicum annuum HOM05D003497 ORTHO05D003964 1.4e-27 127.1 202 40.6
CiPaw.06G163900 Carya illinoinensis HOM05D003497 ORTHO05D003964 1.4e-27 127.1 207 41.5
Peaxi162Scf00152g00641 Petunia axillaris HOM05D003497 ORTHO05D003964 1.4e-27 127.1 199 40.7
Solyc01g006990.4 Solanum lycopersicum HOM05D003497 ORTHO05D003964 1.4e-27 127.1 199 40.2
ECA234G0007 Erigeron canadensis HOM05D003497 ORTHO05D003964 1.9e-27 126.7 188 41.5
SalBow6G6060 Salvia bowleyana HOM05D003497 ORTHO05D003964 1.9e-27 126.7 191 42.9
MELO3C018024.2 Cucumis melo HOM05D003497 ORTHO05D003964 2.4e-27 126.3 198 42.4
Thecc.02G120200 Theobroma cacao HOM05D003497 ORTHO05D003964 2.4e-27 126.3 208 39.9
Ah.01g007110 Amaranthus hybridus HOM05D003497 ORTHO05D003964 3.2e-27 125.9 198 41.4
SGA_v2.0_scaffold225G43063 Striga asiatica HOM05D003497 ORTHO05D003964 3.2e-27 125.9 212 40.6
DCAR_021943 Daucus carota HOM05D003497 ORTHO05D003964 5.4e-27 125.2 200 41.0
Cfa004695 Carpinus fangiana HOM05D003497 ORTHO05D003964 9.2e-27 124.4 196 40.8
Prupe.8G150500 Prunus persica HOM05D003497 ORTHO05D003964 9.2e-27 124.4 206 42.2
COL.COLO4_32482 Corchorus olitorius HOM05D003497 ORTHO05D003964 1.2e-26 124.0 196 40.8
Oeu025307.1 Olea europaea HOM05D003497 ORTHO05D003964 1.2e-26 124.0 214 39.3
Potri.005G109700 Populus trichocarpa HOM05D003497 ORTHO05D003964 1.2e-26 124.0 206 40.3
Actinidia28001 Actinidia chinensis HOM05D000349 ORTHO05D003964 2.1e-26 123.2 200 41.5
CsaV3_4G000070 Cucumis sativus L. HOM05D003497 ORTHO05D003964 4.6e-26 122.1 198 41.4
Atru.chr5.2290 Acer truncatum HOM05D003497 ORTHO05D003964 6.0e-26 121.7 206 39.3
ClCG10G010030 Citrullus lanatus HOM05D003497 ORTHO05D003964 6.0e-26 121.7 198 40.9
Gohir.A03G180900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 7.8e-26 121.3 211 37.9
Ca_11026_v3 Cicer arietinum L. HOM05D003497 ORTHO05D003964 1.3e-25 120.6 196 39.3
Manes.07G056700 Manihot esculenta HOM05D003497 ORTHO05D003964 1.3e-25 120.6 207 39.1
Medtr7g057330 Medicago truncatula HOM05D003497 ORTHO05D003964 1.3e-25 120.6 197 40.1
PSO017G1612 Papaver somniferum HOM05D003497 ORTHO05D003964 1.3e-25 120.6 229 35.4
CSS0043603 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 1.7e-25 120.2 208 40.9
Phvul.005G029200 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 1.7e-25 120.2 199 39.2
TWI14G0922 Tripterygium wilfordii HOM05D003497 ORTHO05D003964 1.7e-25 120.2 192 40.1
Sabra05G0090000 Salix brachista HOM05D003497 ORTHO05D003964 2.3e-25 119.8 206 38.3
AUR62030867 Chenopodium quinoa HOM05D003497 ORTHO05D003964 3.0e-25 119.4 210 39.0
TWI14G1256 Tripterygium wilfordii HOM05D003497 ORTHO05D003964 3.0e-25 119.4 205 40.5
Ciclev10028208m.g Citrus clementina HOM05D003497 ORTHO05D003964 3.9e-25 119.0 194 39.7
Rhsim05G0093000 Rhododendron simsii HOM05D003497 ORTHO05D003964 3.9e-25 119.0 197 40.6
Gorai.005G229700 Gossypium raimondii HOM05D003497 ORTHO05D003964 5.1e-25 118.6 211 37.0
MD10G1110700 Malus domestica HOM05D003497 ORTHO05D003964 5.1e-25 118.6 170 42.9
Psat6g213160 Pisum sativum HOM05D003497 ORTHO05D003964 5.1e-25 118.6 196 39.8
TAR625G0452 Trochodendron aralioides HOM05D003497 ORTHO05D003964 6.6e-25 118.2 198 39.9
MSTRG.16671 Avicennia marina HOM05D003497 ORTHO05D003964 8.6e-25 117.9 201 39.8
CSS0013379 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 8.6e-25 117.9 208 39.9
Haze_10298 Corylus avellana HOM05D003497 ORTHO05D003964 8.6e-25 117.9 207 40.1
Duzib132G0146 Durio zibethinus HOM05D003497 ORTHO05D003964 8.6e-25 117.9 214 39.3
Gohir.D02G203142 Gossypium hirsutum HOM05D003497 ORTHO05D004787 1.5e-24 117.1 211 36.5
unitig_744.g24206 Utricularia gibba HOM05D003497 ORTHO05D003964 1.5e-24 117.1 201 37.3
EL10Ac9g22176 Beta vulgaris HOM05D003497 ORTHO05D003964 2.5e-24 116.3 196 41.3
PSO170G5054 Papaver somniferum HOM05D003497 ORTHO05D003964 5.6e-24 115.2 229 35.8
CSS0047045 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 7.3e-24 114.8 208 38.9
Atru.chr5.2286 Acer truncatum HOM05D003497 ORTHO05D003964 9.6e-24 114.4 210 37.1
vmacro22257 Vaccinium macrocarpon HOM05D003497 ORTHO05D003964 1.2e-23 114.0 197 39.1
HanXRQChr10g0290301 Helianthus annuus HOM05D003497 ORTHO05D003964 2.1e-23 113.2 195 37.4
RcHm_v2.0_Chr6g0248431 Rosa chinensis HOM05D003497 ORTHO05D003964 2.8e-23 112.8 206 37.4
BcaC02g08839 Brassica carinata HOM05D003497 ORTHO05D003964 3.6e-23 112.5 188 38.8
Medtr4g019560 Medicago truncatula HOM05D003497 ORTHO05D003964 3.6e-23 112.5 196 35.7
Sc18g0007350 Simmondsia chinensis HOM05D003497 ORTHO05D003964 6.2e-23 111.7 193 38.9
HanXRQChr10g0290281 Helianthus annuus HOM05D003497 ORTHO05D003964 8.1e-23 111.3 195 37.4
MBI16_g32073_MAGBIO Magnolia biondii HOM05D003497 ORTHO05D003964 1.1e-22 110.9 194 36.6
CANSAT25G1915 Cannabis sativa HOM05D003497 ORTHO05D003964 1.4e-22 110.5 199 38.2
Phvul.005G029000 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 1.4e-22 110.5 193 37.3
FAN27G0942 Fragaria x ananassa HOM05D003497 ORTHO05D003964 2.4e-22 109.8 207 36.2
FAN20G1538 Fragaria x ananassa HOM05D003497 ORTHO05D003964 4.0e-22 109.0 206 36.4
FAN20G2306 Fragaria x ananassa HOM05D003497 ORTHO05D003964 4.0e-22 109.0 206 36.4
RcHm_v2.0_Chr4g0407381 Rosa chinensis HOM05D003497 ORTHO05D003964 5.2e-22 108.6 183 39.3
FvH4_2g03310 Fragaria vesca HOM05D003497 ORTHO05D003964 9.0e-22 107.8 207 35.7
Migut.B00469 Erythranthe guttata HOM05D003497 ORTHO05D003964 3.4e-21 105.9 201 38.3
ATR0739G052 Amborella trichopoda HOM05D003497 ORTHO05D003964 4.4e-21 105.5 215 35.8
Eucgr.H03378 Eucalyptus grandis HOM05D003497 ORTHO05D003964 3.8e-20 102.4 203 35.5
RcHm_v2.0_Chr4g0407371 Rosa chinensis HOM05D003497 ORTHO05D003964 4.9e-20 102.1 188 34.6
SMO270G0122 Selaginella moellendorffii HOM05D003497 ORTHO05D003964 6.4e-20 101.7 172 36.0
MD10G1110600 Malus domestica HOM05D003497 ORTHO05D003964 1.1e-19 100.9 191 37.2
MD05G1106300 Malus domestica HOM05D003497 ORTHO05D003964 1.4e-19 100.5 180 41.1
Aqoxy5G00815 Aquilegia oxysepala HOM05D003497 ORTHO05D003964 2.4e-19 99.8 197 34.5
Os03g0232000 Oryza sativa ssp. japonica HOM05D003497 ORTHO05D003964 2.4e-19 99.8 189 32.8
HanXRQChr10g0290271 Helianthus annuus HOM05D003497 ORTHO05D003964 3.2e-19 99.4 138 41.3
Phvul.005G037100 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 3.2e-19 99.4 192 38.0
Cpa.g.c35687 Carica papaya HOM05D003497 ORTHO05D003964 4.2e-19 99.0 183 40.4
Ciclev10028907m.g Citrus clementina HOM05D003497 ORTHO05D003964 7.1e-19 98.2 208 38.0
MD10G1110300 Malus domestica HOM05D003497 ORTHO05D003964 7.1e-19 98.2 208 35.1
PGR142G0099 Punica granatum HOM05D003497 ORTHO05D003964 1.6e-18 97.1 208 35.1
C03p57300 Brassica napus HOM05D003497 ORTHO05D003964 2.7e-18 96.3 161 44.7
SEGI_36088 Sequoiadendron giganteum HOM05D003497 ORTHO05D003964 2.7e-18 96.3 215 34.4
HPP92_007713 Vanilla planifolia HOM05D003497 ORTHO05D003964 7.8e-18 94.7 193 37.8
AL5G35170 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 1.0e-17 94.4 119 46.2
CDE04G1396 Ceratophyllum demersum HOM05D003497 ORTHO05D003964 1.0e-17 94.4 197 35.5
AagrBONN_evm.TU.Sc2ySwM_344.3993 Anthoceros agrestis HOM05D003497 ORTHO05D003964 1.7e-17 93.6 203 33.0
PSO170G0850 Papaver somniferum HOM05D003497 ORTHO05D003964 2.3e-17 93.2 218 31.7
Sed0000294 Sechium edule HOM05D003497 ORTHO05D003964 8.7e-17 91.3 179 36.3
Mapoly0001s0353 Marchantia polymorpha HOM05D003497 ORTHO05D003964 1.9e-16 90.1 225 29.8
PSO017G7033 Papaver somniferum HOM05D003497 ORTHO05D003964 1.9e-16 90.1 218 31.2
RcHm_v2.0_Chr4g0407391 Rosa chinensis HOM05D003497 ORTHO05D003964 2.5e-16 89.7 220 31.8
FvH4_5g20811 Fragaria vesca HOM05D003497 ORTHO05D003964 3.3e-16 89.4 222 34.2
BcaC07g39213 Brassica carinata HOM05D003497 ORTHO05D024176 7.3e-16 88.2 187 39.6
Migut.B00470 Erythranthe guttata HOM05D003497 ORTHO05D003964 9.6e-16 87.8 194 34.5
FAN04G2985 Fragaria x ananassa HOM05D003497 ORTHO05D003964 1.3e-15 87.4 217 33.2
Potri.015G020600 Populus trichocarpa HOM05D003497 ORTHO05D003964 3.6e-15 85.9 87 47.1
PGR102G1733 Punica granatum HOM05D003497 ORTHO05D003964 8.1e-15 84.7 185 33.0
PGR102G1148 Punica granatum HOM05D003497 ORTHO05D003964 1.1e-14 84.3 193 34.2
BcaC02g08834 Brassica carinata HOM05D003497 ORTHO05D003964 1.4e-14 84.0 139 38.8
BcaC02g08838 Brassica carinata HOM05D003497 ORTHO05D003964 1.4e-14 84.0 139 38.8
COL.COLO4_32483 Corchorus olitorius HOM05D003497 ORTHO05D003964 1.8e-14 83.6 195 34.4
FAN18G2835 Fragaria x ananassa HOM05D003497 ORTHO05D003964 2.4e-14 83.2 223 33.6
Eucgr.I02498 Eucalyptus grandis HOM05D003497 ORTHO05D003964 4.0e-14 82.4 252 30.2
Pp3c15_1340 Physcomitrium patens HOM05D003497 ORTHO05D003964 5.3e-14 82.0 226 30.1
Zm00001eb009480 Zea mays HOM05D003497 ORTHO05D003964 6.9e-14 81.6 190 30.0
C08p22090 Brassica napus HOM05D003497 ORTHO05D024176 1.2e-13 80.9 115 50.4
BolC8t49854H Brassica oleracea HOM05D003497 ORTHO05D024176 1.2e-13 80.9 115 50.4
RcHm_v2.0_Chr4g0395411 Rosa chinensis HOM05D003497 ORTHO05D003964 2.6e-13 79.7 75 49.3
Haze_10296 Corylus avellana HOM05D003497 ORTHO05D003964 2.9e-12 76.3 55 67.3
MD10G1175800 Malus domestica HOM05D003497 ORTHO05D003964 3.8e-12 75.9 220 29.1
Sed0016990 Sechium edule HOM05D003497 ORTHO05D003964 3.8e-12 75.9 180 32.8
MD10G1110400 Malus domestica HOM05D003497 ORTHO05D003964 4.9e-12 75.5 72 52.8
Sed0003270 Sechium edule HOM05D003497 ORTHO05D003964 2.7e-10 69.7 185 29.2
Sed0009840 Sechium edule HOM05D003497 ORTHO05D003964 1.0e-09 67.8 179 33.0
Dinv09537 Davidia involucrata HOM05D006380 ORTHO05D008400 3.0e-09 66.2 159 34.0
PSO170G1569 Papaver somniferum HOM05D003497 ORTHO05D003964 5.1e-09 65.5 66 53.0
Potri.017G134500 Populus trichocarpa HOM05D003497 ORTHO05D003964 2.5e-08 63.2 98 40.8
PGR119G2181 Punica granatum HOM05D003497 ORTHO05D003964 4.3e-08 62.4 118 34.7
PSO017G5705 Papaver somniferum HOM05D003497 ORTHO05D003964 7.4e-08 61.6 66 51.5
BcaC01g03001 Brassica carinata HOM05D003497 ORTHO05D003964 9.6e-08 61.2 154 35.1
Cfa004698 Carpinus fangiana HOM05D003497 ORTHO05D003964 2.1e-07 60.1 55 60.0
Haze_10290 Corylus avellana HOM05D003497 ORTHO05D003964 2.1e-07 60.1 228 30.3
SEGI_41103 Sequoiadendron giganteum HOM05D003497 ORTHO05D003964 1.8e-06 57.0 159 28.9
CBR_g19394 Chara braunii HOM05D003497 ORTHO05D003964 5.3e-06 55.5 67 44.8


User provided reference genes

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