Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G28650 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 1.9e-175 619.0 306 100.0
Carub.0002s1615 Capsella rubella HOM05D001860 ORTHO05D004922 5.5e-154 547.7 310 89.0
BcaB03g14715 Brassica carinata HOM05D001860 ORTHO05D004922 4.0e-120 435.3 311 72.3
BolC6t39398H Brassica oleracea HOM05D001860 ORTHO05D004922 2.9e-118 429.1 312 72.4
C06p40340 Brassica napus HOM05D001860 ORTHO05D004922 1.4e-117 426.8 312 71.8
BolC6t39396H Brassica oleracea HOM05D001860 ORTHO05D004922 2.4e-117 426.0 312 72.4
BraA07t31170Z Brassica rapa HOM05D001860 ORTHO05D004922 9.2e-117 424.1 318 71.4
A07p35830 Brassica napus HOM05D001860 ORTHO05D004922 2.7e-116 422.5 318 71.4
BraA07t31169Z Brassica rapa HOM05D001860 ORTHO05D004922 2.7e-116 422.5 318 71.4
A07p35840 Brassica napus HOM05D001860 ORTHO05D004922 2.3e-115 419.5 318 70.8
Carub.0002s1616 Capsella rubella HOM05D001860 ORTHO05D004922 8.1e-105 384.4 310 65.2
AT1G69523 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 1.1e-104 384.0 307 63.8
A07p35850 Brassica napus HOM05D001860 ORTHO05D004922 3.1e-104 382.5 307 65.8
C06p40330 Brassica napus HOM05D001860 ORTHO05D004922 6.8e-104 381.3 308 65.9
BcaC08g46390 Brassica carinata HOM05D001860 ORTHO05D004922 1.5e-103 380.2 285 71.6
Sp5g24630 Schrenkiella parvula HOM05D001860 ORTHO05D004922 1.7e-102 376.7 307 63.8
BcaC08g46392 Brassica carinata HOM05D001860 ORTHO05D004922 1.4e-101 373.6 303 65.3
BolC6t39399H Brassica oleracea HOM05D001860 ORTHO05D004922 9.2e-101 370.9 306 64.4
C06p40360 Brassica napus HOM05D001860 ORTHO05D004922 1.2e-100 370.5 282 70.2
Aa31LG4G11250 Aethionema arabicum HOM05D001860 ORTHO05D004922 7.8e-100 367.9 310 63.5
BraA07t31171Z Brassica rapa HOM05D001860 ORTHO05D004922 5.1e-99 365.2 299 64.9
BcaB03g14720 Brassica carinata HOM05D001860 ORTHO05D004922 2.4e-96 356.3 303 63.4
CARHR062460 Cardamine hirsuta HOM05D001860 ORTHO05D004922 1.4e-93 347.1 308 61.4
Carub.0002s1617 Capsella rubella HOM05D001860 ORTHO05D004922 1.4e-88 330.5 302 57.6
THA.LOC104822044 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 1.8e-88 330.1 338 53.0
BcaB03g15478 Brassica carinata HOM05D001860 ORTHO05D004922 6.9e-88 328.2 307 57.3
THA.LOC104822045 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 7.6e-87 324.7 330 55.5
Thhalv10018913m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 3.8e-86 322.4 263 62.4
Sp5g24640 Schrenkiella parvula HOM05D001860 ORTHO05D004922 3.2e-85 319.3 308 55.5
AT1G69526 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 4.2e-85 318.9 302 56.0
BraA07t30786Z Brassica rapa HOM05D001860 ORTHO05D004922 8.7e-83 311.2 277 57.0
TWI31G0055 Tripterygium wilfordii HOM05D001860 ORTHO05D004922 5.8e-79 298.5 257 57.2
GSVIVG01019959001 Vitis vinifera HOM05D001860 ORTHO05D004922 9.9e-79 297.7 256 57.4
THA.LOC104822184 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 2.9e-78 296.2 221 66.1
HanXRQChr17g0545281 Helianthus annuus HOM05D001860 ORTHO05D004922 9.3e-77 291.2 310 50.6
Atru.chr11.1760 Acer truncatum HOM05D001860 ORTHO05D004922 3.5e-76 289.3 308 51.0
MELO3C012111.2 Cucumis melo HOM05D001860 ORTHO05D004922 6.0e-76 288.5 259 56.0
Ca_04822_v3 Cicer arietinum L. HOM05D001860 ORTHO05D004922 7.9e-76 288.1 265 54.0
Haze_11992 Corylus avellana HOM05D001860 ORTHO05D004922 1.3e-75 287.3 266 56.8
CiPaw.06G086900 Carya illinoinensis HOM05D001860 ORTHO05D004922 3.0e-75 286.2 269 56.1
EL10Ac6g13236 Beta vulgaris HOM05D001860 ORTHO05D004922 5.1e-75 285.4 259 56.4
ECA246G1483 Erigeron canadensis HOM05D001860 ORTHO05D004922 6.7e-75 285.0 292 52.1
Manes.05G104100 Manihot esculenta HOM05D001860 ORTHO05D004922 8.7e-75 284.6 291 51.2
Cfa008963 Carpinus fangiana HOM05D001860 ORTHO05D004922 1.5e-74 283.9 267 56.6
CsaV3_5G032900 Cucumis sativus L. HOM05D001860 ORTHO05D004922 1.5e-74 283.9 259 55.2
Lsat_1_v5_gn_3_52040 Lactuca sativa HOM05D001860 ORTHO05D004922 1.5e-74 283.9 283 53.4
Sed0020595 Sechium edule HOM05D001860 ORTHO05D004922 1.5e-74 283.9 261 55.2
RcHm_v2.0_Chr4g0439511 Rosa chinensis HOM05D001860 ORTHO05D004922 1.9e-74 283.5 259 55.2
SalBow2G3316 Salvia bowleyana HOM05D001860 ORTHO05D004922 3.3e-74 282.7 271 53.1
Ciclev10032245m.g Citrus clementina HOM05D001860 ORTHO05D004922 5.6e-74 282.0 260 54.6
Actinidia31905 Actinidia chinensis HOM05D001860 ORTHO05D004922 7.4e-74 281.6 315 47.6
MSTRG.7790 Avicennia marina HOM05D001860 ORTHO05D004922 7.4e-74 281.6 274 53.3
Potri.008G088500 Populus trichocarpa HOM05D001860 ORTHO05D004922 9.6e-74 281.2 254 55.9
CsaV3_5G032890 Cucumis sativus L. HOM05D001860 ORTHO05D004922 1.3e-73 280.8 259 54.8
FAN07G2810 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.6e-73 280.4 287 52.3
FAN12G1253 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.6e-73 280.4 281 53.0
Phvul.002G083300 Phaseolus vulgaris HOM05D001860 ORTHO05D004922 1.6e-73 280.4 318 47.5
QL03p068521 Quercus lobata HOM05D001860 ORTHO05D004922 2.1e-73 280.0 259 55.6
Medtr5g041780 Medicago truncatula HOM05D001860 ORTHO05D004922 2.8e-73 279.6 262 52.7
Oeu028270.1 Olea europaea HOM05D001860 ORTHO05D004922 3.7e-73 279.3 313 48.9
Glyma.02G109300 Glycine max HOM05D001860 ORTHO05D004922 6.2e-73 278.5 309 48.5
Hma1.2p1_1079F.1_g254970 Hydrangea macrophylla HOM05D001860 ORTHO05D004922 1.8e-72 276.9 255 55.7
Psat2g116760 Pisum sativum HOM05D001860 ORTHO05D004922 2.4e-72 276.6 256 53.5
FAN22G1600 Fragaria x ananassa HOM05D001860 ORTHO05D004922 3.1e-72 276.2 285 51.9
Rhsim12G0064600 Rhododendron simsii HOM05D001860 ORTHO05D004922 3.1e-72 276.2 257 54.9
Duzib248G0566 Durio zibethinus HOM05D001860 ORTHO05D004922 5.3e-72 275.4 261 55.2
Solyc06g084030.3 Solanum lycopersicum HOM05D001860 ORTHO05D004922 9.0e-72 274.6 266 53.8
Lj2g0002858 Lotus japonicus HOM05D001860 ORTHO05D004922 1.5e-71 273.9 268 51.9
CANSAT64G2732 Cannabis sativa HOM05D001860 ORTHO05D004922 2.0e-71 273.5 258 53.9
arahy.Tifrunner.gnm1.ann1.0UW6S5 Arachis hypogaea HOM05D001860 ORTHO05D004922 2.6e-71 273.1 260 51.5
PSO478G0757 Papaver somniferum HOM05D001860 ORTHO05D004922 2.6e-71 273.1 257 54.1
TAR629G3174 Trochodendron aralioides HOM05D001860 ORTHO05D004922 2.6e-71 273.1 255 53.3
ClCG05G024130 Citrullus lanatus HOM05D001860 ORTHO05D004922 3.4e-71 272.7 251 54.6
QL03p068489 Quercus lobata HOM05D001860 ORTHO05D004922 3.4e-71 272.7 253 56.1
CSS0022995 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 5.8e-71 271.9 256 53.1
Thecc.02G343500 Theobroma cacao HOM05D001860 ORTHO05D004922 5.8e-71 271.9 261 52.9
Nn3g17288 Nelumbo nucifera HOM05D001860 ORTHO05D004922 7.6e-71 271.6 255 53.3
Sopen06g035410 Solanum pennellii HOM05D001860 ORTHO05D004922 7.6e-71 271.6 313 48.2
Eucgr.B03211 Eucalyptus grandis HOM05D001860 ORTHO05D004922 1.7e-70 270.4 256 53.1
Gorai.013G087000 Gossypium raimondii HOM05D001860 ORTHO05D004922 1.7e-70 270.4 286 50.3
QL03p068503 Quercus lobata HOM05D001860 ORTHO05D004922 1.7e-70 270.4 255 55.7
Aqoxy5G04114 Aquilegia oxysepala HOM05D001860 ORTHO05D004922 2.9e-70 269.6 269 49.8
PSO017G0798 Papaver somniferum HOM05D001860 ORTHO05D004922 3.8e-70 269.2 256 54.3
CAN.G771.16 Capsicum annuum HOM05D001860 ORTHO05D004922 6.4e-70 268.5 267 52.1
Hund25222 Selenicereus undatus HOM05D001860 ORTHO05D004922 6.4e-70 268.5 259 52.9
BcaB03g14717 Brassica carinata HOM05D001860 ORTHO05D004922 1.4e-69 267.3 167 81.4
FvH4_4g31120 Fragaria vesca HOM05D001860 ORTHO05D004922 1.9e-69 266.9 293 50.9
Os02g0744100 Oryza sativa ssp. japonica HOM05D001860 ORTHO05D004922 4.2e-69 265.8 256 52.3
MBI05_g10765_MAGBIO Magnolia biondii HOM05D001860 ORTHO05D004922 7.1e-69 265.0 254 50.8
arahy.Tifrunner.gnm1.ann1.F2WL4X Arachis hypogaea HOM05D001860 ORTHO05D004922 9.3e-69 264.6 288 47.9
Lj3A1035T53 Lonicera japonica HOM05D001860 ORTHO05D004922 9.3e-69 264.6 223 58.7
vmacro01268 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 1.2e-68 264.2 294 49.0
Zm00001eb194590 Zea mays HOM05D001860 ORTHO05D004922 1.6e-68 263.8 255 51.8
arahy.Tifrunner.gnm1.ann1.WF3EDY Arachis hypogaea HOM05D001860 ORTHO05D004922 2.7e-68 263.1 288 47.6
MD16G1070300 Malus domestica HOM05D001860 ORTHO05D004922 2.7e-68 263.1 329 44.7
TPR.G36138 Trifolium pratense HOM05D001860 ORTHO05D004922 2.7e-68 263.1 221 56.1
PGSC0003DMG400020063 Solanum tuberosum HOM05D001860 ORTHO05D004922 3.5e-68 262.7 242 55.0
SGA_v2.0_scaffold172G38956 Striga asiatica HOM05D001860 ORTHO05D004922 1.0e-67 261.2 308 46.4
DCAR_026253 Daucus carota HOM05D001016 ORTHO05D003396 1.3e-67 260.8 280 50.7
Cc11_g12800 Coffea canephora HOM05D001860 ORTHO05D004922 2.3e-67 260.0 256 53.9
CARHR062480 Cardamine hirsuta HOM05D001860 ORTHO05D004922 6.7e-67 258.5 200 64.5
MELO3C012110.2 Cucumis melo HOM05D001860 ORTHO05D004922 6.7e-67 258.5 287 48.8
Nitab4.5_0006433g0040 Nicotiana tabacum HOM05D001860 ORTHO05D004922 1.1e-66 257.7 223 57.8
SEGI_35280 Sequoiadendron giganteum HOM05D001860 ORTHO05D004922 1.1e-66 257.7 299 46.2
Migut.L01273 Erythranthe guttata HOM05D001860 ORTHO05D004922 1.5e-66 257.3 223 56.5
Nitab4.5_0001044g0130 Nicotiana tabacum HOM05D001860 ORTHO05D004922 1.5e-66 257.3 246 53.7
ATR0564G196 Amborella trichopoda HOM05D001860 ORTHO05D004922 1.3e-65 254.2 288 47.2
unitig_26.g10298 Utricularia gibba HOM05D001860 ORTHO05D004922 2.8e-65 253.1 292 46.9
COL.COLO4_22943 Corchorus olitorius HOM05D001860 ORTHO05D004922 3.7e-65 252.7 296 46.6
Lalb_Chr04g0255941 Lupinus albus HOM05D001860 ORTHO05D004922 3.7e-65 252.7 348 41.1
HPP92_016837 Vanilla planifolia HOM05D001860 ORTHO05D004922 3.7e-65 252.7 265 47.9
Peaxi162Scf01530g00038 Petunia axillaris HOM05D001860 ORTHO05D004922 1.8e-64 250.4 223 55.6
BcaC08g46388 Brassica carinata HOM05D001860 ORTHO05D004922 1.3e-62 244.2 210 57.1
Carub.0002s1614 Capsella rubella HOM05D001860 ORTHO05D004922 1.7e-62 243.8 213 58.7
Sabra08G0066100 Salix brachista HOM05D001860 ORTHO05D004922 2.9e-62 243.0 337 43.3
AUR62032811 Chenopodium quinoa HOM05D001860 ORTHO05D004922 3.8e-62 242.7 240 48.3
vmacro01267 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 3.8e-62 242.7 338 43.2
BraA07t31168Z Brassica rapa HOM05D001482 ORTHO05D001499 8.4e-62 241.5 204 58.3
Sp5g24620 Schrenkiella parvula HOM05D001860 ORTHO05D004922 1.1e-61 241.1 143 83.9
Sp5g24610 Schrenkiella parvula HOM05D001860 ORTHO05D004922 1.4e-61 240.7 210 58.6
A07p35820 Brassica napus HOM05D001482 ORTHO05D001499 1.9e-61 240.4 204 57.8
BolC6t39394H Brassica oleracea HOM05D001482 ORTHO05D001499 1.9e-61 240.4 210 57.1
BcaB03g14714 Brassica carinata HOM05D001860 ORTHO05D004922 7.1e-61 238.4 210 56.7
CARHR062450 Cardamine hirsuta HOM05D001860 ORTHO05D004922 1.6e-60 237.3 215 57.7
Thhalv10019583m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 1.6e-60 237.3 210 57.6
AL2G28640 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 2.7e-60 236.5 215 56.7
CDE04G1474 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 2.7e-60 236.5 232 50.0
AT1G69520 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 7.9e-60 235.0 210 56.7
SMO239G0167 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 2.5e-58 229.9 286 45.1
CDE06G2440 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 2.2e-57 226.9 227 48.9
FAN17G3114 Fragaria x ananassa HOM05D001860 ORTHO05D004922 2.8e-57 226.5 278 46.4
AagrBONN_evm.TU.Sc2ySwM_368.914 Anthoceros agrestis HOM05D001860 ORTHO05D004922 2.4e-56 223.4 269 45.7
Pp3c24_6910 Physcomitrium patens HOM05D001860 ORTHO05D004922 3.8e-54 216.1 217 47.9
C06p40380 Brassica napus HOM05D001482 ORTHO05D001499 1.9e-53 213.8 226 50.4
Mapoly0002s0191 Marchantia polymorpha HOM05D001860 ORTHO05D004922 1.9e-53 213.8 257 43.2
Thhalv10019188m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 3.2e-53 213.0 190 62.1
Gohir.A13G076700 Gossypium hirsutum HOM05D001860 ORTHO05D004922 2.7e-52 209.9 221 50.7
Gohir.D13G076400 Gossypium hirsutum HOM05D001860 ORTHO05D004922 2.7e-52 209.9 221 50.7
Prupe.1G276900 Prunus persica HOM05D001860 ORTHO05D004922 6.1e-52 208.8 198 54.0
C06p40370 Brassica napus HOM05D001860 ORTHO05D004922 1.5e-50 204.1 308 44.8
SMO137G0248 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 2.6e-47 193.4 203 48.3
PGR102G3336 Punica granatum HOM05D001860 ORTHO05D004922 8.5e-46 188.3 174 54.6
Aa31LG4G11270 Aethionema arabicum HOM05D001860 ORTHO05D004922 4.2e-45 186.0 236 47.0
Ah.02g129590 Amaranthus hybridus HOM05D001860 ORTHO05D004922 2.3e-43 180.3 265 40.4
BcaC08g45887 Brassica carinata HOM05D001860 ORTHO05D004922 1.2e-39 167.9 131 64.1
CSS0019961 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 4.5e-39 166.0 158 51.9
C06p36870 Brassica napus HOM05D000005 ORTHO05D042562 7.7e-39 165.2 295 39.3
A07p31570 Brassica napus HOM05D001860 ORTHO05D004922 3.8e-38 162.9 120 67.5
Sc11g0002060 Simmondsia chinensis HOM05D001860 ORTHO05D004922 1.6e-36 157.5 167 48.5
BolC6t38800H Brassica oleracea HOM05D000005 ORTHO05D042562 2.7e-36 156.8 120 65.8
Oeu028272.1 Olea europaea HOM05D001860 ORTHO05D004922 9.7e-34 148.3 123 59.3
AUR62005816 Chenopodium quinoa HOM05D001860 ORTHO05D004922 2.4e-32 143.7 135 51.9
CBR_g41443 Chara braunii HOM05D001860 ORTHO05D004922 4.1e-32 142.9 283 35.3
Dinv16666 Davidia involucrata HOM05D001860 ORTHO05D004922 7.7e-31 138.7 142 51.4
MCO03G556 Micromonas commoda HOM05D001860 ORTHO05D004922 1.0e-30 138.3 235 35.7
MCO09G753 Micromonas commoda HOM05D001860 ORTHO05D004922 1.6e-28 131.0 146 45.2
Cpa.g.sc350.4 Carica papaya HOM05D001860 ORTHO05D004922 4.7e-28 129.4 127 54.3
PRCOL_00000783 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 5.2e-27 125.9 183 41.5
Cre07.g342550 Chlamydomonas reinhardtii HOM05D001860 ORTHO05D004922 1.1e-24 118.2 190 34.7
PRCOL_00003589 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 1.4e-24 117.9 180 38.3
CSS0034144 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.0e-19 101.7 84 58.3
CSS0016207 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 5.7e-18 95.9 77 58.4
Thecc.01G276100 Theobroma cacao HOM05D001860 ORTHO05D004922 1.2e-12 78.2 83 45.8
Cfa024139 Carpinus fangiana HOM05D001860 ORTHO05D004922 3.0e-11 73.6 164 34.1
PRCOL_00001331 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 6.8e-11 72.4 172 27.3
VMungo1383G2064 Vigna mungo HOM05D001860 ORTHO05D004922 8.9e-11 72.0 80 43.8
Actinidia19883 Actinidia chinensis HOM05D001860 ORTHO05D004922 2.2e-09 67.4 105 39.0
arahy.Tifrunner.gnm1.ann1.661SM0 Arachis hypogaea HOM05D001860 ORTHO05D004922 4.9e-09 66.2 84 46.4
CBR_g34579 Chara braunii HOM05D001860 ORTHO05D019626 1.4e-08 64.7 173 29.5
Zm00001eb254460 Zea mays HOM05D001860 ORTHO05D004922 7.0e-08 62.4 74 48.6
MCO03G203 Micromonas commoda HOM05D023757 ORTHO05D024904 7.8e-07 58.9 137 32.1
TPR.G39184 Trifolium pratense HOM05D001860 ORTHO05D004922 7.8e-07 58.9 57 49.1
CARHR062470 Cardamine hirsuta HOM05D001860 ORTHO05D004922 1.0e-06 58.5 59 49.2


User provided reference genes

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