Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G28640 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 1.4e-130 469.5 231 100.0
AT1G69520 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 6.7e-120 434.1 232 92.2
Carub.0002s1614 Capsella rubella HOM05D001860 ORTHO05D004922 1.2e-116 423.3 230 90.4
Thhalv10019583m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 3.9e-104 381.7 232 81.5
CARHR062450 Cardamine hirsuta HOM05D001860 ORTHO05D004922 2.8e-102 375.6 219 85.8
Sp5g24610 Schrenkiella parvula HOM05D001860 ORTHO05D004922 4.1e-101 371.7 232 80.6
BcaC08g46388 Brassica carinata HOM05D001860 ORTHO05D004922 5.3e-101 371.3 227 81.5
BolC6t39394H Brassica oleracea HOM05D001482 ORTHO05D001499 5.3e-101 371.3 227 81.9
BcaB03g14714 Brassica carinata HOM05D001860 ORTHO05D004922 1.2e-100 370.2 232 80.2
A07p35820 Brassica napus HOM05D001482 ORTHO05D001499 7.7e-100 367.5 227 81.5
BraA07t31168Z Brassica rapa HOM05D001482 ORTHO05D001499 5.0e-99 364.8 227 80.6
C06p40380 Brassica napus HOM05D001482 ORTHO05D001499 2.5e-82 309.3 234 70.1
BraA07t30786Z Brassica rapa HOM05D001860 ORTHO05D004922 4.5e-76 288.5 219 64.4
Aa31LG4G11270 Aethionema arabicum HOM05D001860 ORTHO05D004922 7.8e-76 287.7 264 60.6
Thhalv10018913m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 7.8e-76 287.7 219 65.3
BcaB03g15478 Brassica carinata HOM05D001860 ORTHO05D004922 5.0e-75 285.0 219 63.5
Sp5g24640 Schrenkiella parvula HOM05D001860 ORTHO05D004922 1.9e-74 283.1 219 63.9
AT1G69526 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 4.7e-73 278.5 219 62.6
CARHR062480 Cardamine hirsuta HOM05D001860 ORTHO05D004922 2.3e-72 276.2 201 66.7
Carub.0002s1617 Capsella rubella HOM05D001860 ORTHO05D004922 3.0e-72 275.8 219 62.1
THA.LOC104822184 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 2.7e-68 262.7 219 60.7
THA.LOC104822045 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 8.0e-65 251.1 227 57.7
AT1G69523 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 1.8e-64 250.0 215 59.1
Aa31LG4G11250 Aethionema arabicum HOM05D001860 ORTHO05D004922 4.0e-64 248.8 215 60.5
Carub.0002s1616 Capsella rubella HOM05D001860 ORTHO05D004922 2.6e-63 246.1 215 57.7
A07p35850 Brassica napus HOM05D001860 ORTHO05D004922 2.9e-62 242.7 219 56.6
TPR.G36138 Trifolium pratense HOM05D001860 ORTHO05D004922 3.7e-62 242.3 215 55.8
C06p40330 Brassica napus HOM05D001860 ORTHO05D004922 6.4e-62 241.5 215 57.2
CARHR062460 Cardamine hirsuta HOM05D001860 ORTHO05D004922 1.4e-61 240.4 216 56.9
BcaB03g14715 Brassica carinata HOM05D001860 ORTHO05D004922 3.2e-61 239.2 215 55.8
THA.LOC104822044 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 4.1e-61 238.8 249 53.4
Sp5g24630 Schrenkiella parvula HOM05D001860 ORTHO05D004922 5.4e-61 238.4 215 56.7
Ca_04822_v3 Cicer arietinum L. HOM05D001860 ORTHO05D004922 7.0e-61 238.0 215 54.9
FAN07G2810 Fragaria x ananassa HOM05D001860 ORTHO05D004922 7.0e-61 238.0 216 59.3
RcHm_v2.0_Chr4g0439511 Rosa chinensis HOM05D001860 ORTHO05D004922 1.2e-60 237.3 214 59.3
CsaV3_5G032890 Cucumis sativus L. HOM05D001860 ORTHO05D004922 1.6e-60 236.9 214 57.9
Carub.0002s1615 Capsella rubella HOM05D001860 ORTHO05D004922 2.1e-60 236.5 215 56.7
AL2G28650 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 2.7e-60 236.1 215 56.7
Psat2g116760 Pisum sativum HOM05D001860 ORTHO05D004922 2.7e-60 236.1 212 56.6
Duzib248G0566 Durio zibethinus HOM05D001860 ORTHO05D004922 3.5e-60 235.7 218 56.0
Medtr5g041780 Medicago truncatula HOM05D001860 ORTHO05D004922 3.5e-60 235.7 215 55.8
BcaC08g46392 Brassica carinata HOM05D001860 ORTHO05D004922 6.0e-60 235.0 210 56.7
A07p35830 Brassica napus HOM05D001860 ORTHO05D004922 7.8e-60 234.6 216 55.6
BraA07t31169Z Brassica rapa HOM05D001860 ORTHO05D004922 7.8e-60 234.6 216 55.6
MELO3C012111.2 Cucumis melo HOM05D001860 ORTHO05D004922 1.0e-59 234.2 200 58.0
Manes.05G104100 Manihot esculenta HOM05D001860 ORTHO05D004922 1.0e-59 234.2 214 56.1
A07p35840 Brassica napus HOM05D001860 ORTHO05D004922 1.3e-59 233.8 216 55.6
BolC6t39396H Brassica oleracea HOM05D001860 ORTHO05D004922 1.3e-59 233.8 216 55.6
BolC6t39398H Brassica oleracea HOM05D001860 ORTHO05D004922 1.3e-59 233.8 216 55.6
BraA07t31170Z Brassica rapa HOM05D001860 ORTHO05D004922 1.3e-59 233.8 216 55.6
BolC6t39399H Brassica oleracea HOM05D001860 ORTHO05D004922 1.7e-59 233.4 213 55.9
Phvul.002G083300 Phaseolus vulgaris HOM05D001860 ORTHO05D004922 1.7e-59 233.4 218 56.4
C06p40340 Brassica napus HOM05D001860 ORTHO05D004922 2.3e-59 233.0 216 55.6
CsaV3_5G032900 Cucumis sativus L. HOM05D001860 ORTHO05D004922 2.3e-59 233.0 200 57.5
FAN22G1600 Fragaria x ananassa HOM05D001860 ORTHO05D004922 2.3e-59 233.0 214 57.9
Sed0020595 Sechium edule HOM05D001860 ORTHO05D004922 2.3e-59 233.0 200 58.0
EL10Ac6g13236 Beta vulgaris HOM05D001860 ORTHO05D004922 3.0e-59 232.6 214 54.7
Thecc.02G343500 Theobroma cacao HOM05D001860 ORTHO05D004922 6.6e-59 231.5 218 55.0
FAN12G1253 Fragaria x ananassa HOM05D001860 ORTHO05D004922 8.6e-59 231.1 214 57.9
Glyma.02G109300 Glycine max HOM05D001860 ORTHO05D004922 8.6e-59 231.1 217 56.7
TWI31G0055 Tripterygium wilfordii HOM05D001860 ORTHO05D004922 1.1e-58 230.7 217 53.5
BcaB03g14720 Brassica carinata HOM05D001860 ORTHO05D004922 1.9e-58 229.9 210 56.2
MSTRG.7790 Avicennia marina HOM05D001860 ORTHO05D004922 2.5e-58 229.6 217 53.9
arahy.Tifrunner.gnm1.ann1.0UW6S5 Arachis hypogaea HOM05D001860 ORTHO05D004922 3.3e-58 229.2 215 56.7
Ciclev10032245m.g Citrus clementina HOM05D001860 ORTHO05D004922 4.3e-58 228.8 217 53.9
Haze_11992 Corylus avellana HOM05D001860 ORTHO05D004922 4.3e-58 228.8 214 55.6
Potri.008G088500 Populus trichocarpa HOM05D001860 ORTHO05D004922 7.3e-58 228.0 220 54.1
BraA07t31171Z Brassica rapa HOM05D001860 ORTHO05D004922 9.5e-58 227.6 208 55.8
GSVIVG01019959001 Vitis vinifera HOM05D001860 ORTHO05D004922 9.5e-58 227.6 214 52.3
CANSAT64G2732 Cannabis sativa HOM05D001860 ORTHO05D004922 1.6e-57 226.9 217 54.4
CSS0022995 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 2.8e-57 226.1 214 53.3
Lj2g0002858 Lotus japonicus HOM05D001860 ORTHO05D004922 2.8e-57 226.1 217 54.8
CiPaw.06G086900 Carya illinoinensis HOM05D001860 ORTHO05D004922 3.6e-57 225.7 213 54.5
AUR62032811 Chenopodium quinoa HOM05D001860 ORTHO05D004922 4.7e-57 225.3 217 53.0
Lsat_1_v5_gn_3_52040 Lactuca sativa HOM05D001860 ORTHO05D004922 4.7e-57 225.3 214 53.7
Cfa008963 Carpinus fangiana HOM05D001860 ORTHO05D004922 6.2e-57 224.9 215 54.9
Gorai.013G087000 Gossypium raimondii HOM05D001860 ORTHO05D004922 6.2e-57 224.9 215 53.5
SalBow2G3316 Salvia bowleyana HOM05D001860 ORTHO05D004922 1.1e-56 224.2 217 53.0
Hund25222 Selenicereus undatus HOM05D001860 ORTHO05D004922 1.8e-56 223.4 214 53.7
Actinidia31905 Actinidia chinensis HOM05D001860 ORTHO05D004922 3.1e-56 222.6 213 52.6
Oeu028270.1 Olea europaea HOM05D001860 ORTHO05D004922 3.1e-56 222.6 215 51.6
Os02g0744100 Oryza sativa ssp. japonica HOM05D001860 ORTHO05D004922 3.1e-56 222.6 214 51.4
SGA_v2.0_scaffold172G38956 Striga asiatica HOM05D001860 ORTHO05D004922 3.1e-56 222.6 217 52.1
Atru.chr11.1760 Acer truncatum HOM05D001860 ORTHO05D004922 4.0e-56 222.2 215 54.9
Nitab4.5_0006433g0040 Nicotiana tabacum HOM05D001860 ORTHO05D004922 4.0e-56 222.2 217 53.5
QL03p068521 Quercus lobata HOM05D001860 ORTHO05D004922 4.0e-56 222.2 214 54.2
MD16G1070300 Malus domestica HOM05D001860 ORTHO05D004922 5.2e-56 221.9 233 52.8
Peaxi162Scf01530g00038 Petunia axillaris HOM05D001860 ORTHO05D004922 6.8e-56 221.5 217 53.5
Eucgr.B03211 Eucalyptus grandis HOM05D001860 ORTHO05D004922 8.9e-56 221.1 214 54.7
CAN.G771.16 Capsicum annuum HOM05D001860 ORTHO05D004922 1.2e-55 220.7 217 51.2
Hma1.2p1_1079F.1_g254970 Hydrangea macrophylla HOM05D001860 ORTHO05D004922 1.2e-55 220.7 214 52.8
Lj3A1035T53 Lonicera japonica HOM05D001860 ORTHO05D004922 1.2e-55 220.7 217 52.1
SEGI_35280 Sequoiadendron giganteum HOM05D001860 ORTHO05D004922 1.2e-55 220.7 217 51.2
ECA246G1483 Erigeron canadensis HOM05D001860 ORTHO05D004922 1.5e-55 220.3 217 51.6
arahy.Tifrunner.gnm1.ann1.F2WL4X Arachis hypogaea HOM05D001860 ORTHO05D004922 2.0e-55 219.9 243 50.6
BcaC08g46390 Brassica carinata HOM05D001860 ORTHO05D004922 2.6e-55 219.5 188 58.0
FvH4_4g31120 Fragaria vesca HOM05D001860 ORTHO05D004922 3.4e-55 219.2 214 56.1
arahy.Tifrunner.gnm1.ann1.WF3EDY Arachis hypogaea HOM05D001860 ORTHO05D004922 4.4e-55 218.8 243 50.2
CDE06G2440 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 4.4e-55 218.8 217 51.2
Nn3g17288 Nelumbo nucifera HOM05D001860 ORTHO05D004922 5.8e-55 218.4 214 52.8
Migut.L01273 Erythranthe guttata HOM05D001860 ORTHO05D004922 9.9e-55 217.6 217 53.5
HanXRQChr17g0545281 Helianthus annuus HOM05D001860 ORTHO05D004922 1.3e-54 217.2 218 50.9
Nitab4.5_0001044g0130 Nicotiana tabacum HOM05D001860 ORTHO05D004922 1.3e-54 217.2 217 51.6
Rhsim12G0064600 Rhododendron simsii HOM05D001860 ORTHO05D004922 1.3e-54 217.2 214 50.5
Sopen06g035410 Solanum pennellii HOM05D001860 ORTHO05D004922 1.7e-54 216.9 217 51.6
Solyc06g084030.3 Solanum lycopersicum HOM05D001860 ORTHO05D004922 2.9e-54 216.1 217 51.6
CDE04G1474 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 3.7e-54 215.7 217 50.2
QL03p068503 Quercus lobata HOM05D001860 ORTHO05D004922 3.7e-54 215.7 194 58.8
ClCG05G024130 Citrullus lanatus HOM05D001860 ORTHO05D004922 4.9e-54 215.3 189 57.7
TAR629G3174 Trochodendron aralioides HOM05D001860 ORTHO05D004922 6.4e-54 214.9 214 51.9
MBI05_g10765_MAGBIO Magnolia biondii HOM05D001860 ORTHO05D004922 8.3e-54 214.5 214 51.4
QL03p068489 Quercus lobata HOM05D001860 ORTHO05D004922 1.1e-53 214.2 194 57.7
PGSC0003DMG400020063 Solanum tuberosum HOM05D001860 ORTHO05D004922 1.4e-53 213.8 217 50.7
Cc11_g12800 Coffea canephora HOM05D001860 ORTHO05D004922 5.4e-53 211.8 211 51.7
PSO478G0757 Papaver somniferum HOM05D001860 ORTHO05D004922 1.2e-52 210.7 210 52.9
PSO017G0798 Papaver somniferum HOM05D001860 ORTHO05D004922 4.6e-52 208.8 209 53.1
Zm00001eb194590 Zea mays HOM05D001860 ORTHO05D004922 4.6e-52 208.8 214 48.1
Aqoxy5G04114 Aquilegia oxysepala HOM05D001860 ORTHO05D004922 7.8e-52 208.0 209 50.2
DCAR_026253 Daucus carota HOM05D001016 ORTHO05D003396 7.8e-52 208.0 223 48.4
MELO3C012110.2 Cucumis melo HOM05D001860 ORTHO05D004922 2.3e-51 206.5 242 48.8
COL.COLO4_22943 Corchorus olitorius HOM05D001860 ORTHO05D004922 8.6e-51 204.5 245 47.3
HPP92_016837 Vanilla planifolia HOM05D001860 ORTHO05D004922 8.6e-51 204.5 198 49.5
Pp3c24_6910 Physcomitrium patens HOM05D001860 ORTHO05D004922 1.1e-50 204.1 214 48.1
unitig_26.g10298 Utricularia gibba HOM05D001860 ORTHO05D004922 1.1e-50 204.1 240 46.7
C06p40360 Brassica napus HOM05D001860 ORTHO05D004922 1.9e-50 203.4 185 55.7
Mapoly0002s0191 Marchantia polymorpha HOM05D001860 ORTHO05D004922 1.4e-48 197.2 215 47.4
Sabra08G0066100 Salix brachista HOM05D001860 ORTHO05D004922 3.1e-48 196.1 248 44.4
vmacro01268 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 3.1e-48 196.1 251 42.6
ATR0564G196 Amborella trichopoda HOM05D001860 ORTHO05D004922 4.0e-48 195.7 215 47.4
BolC6t38800H Brassica oleracea HOM05D000005 ORTHO05D042562 5.2e-48 195.3 271 44.6
Lalb_Chr04g0255941 Lupinus albus HOM05D001860 ORTHO05D004922 6.8e-48 194.9 286 42.3
SMO239G0167 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 1.5e-47 193.7 217 46.1
vmacro01267 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 2.6e-47 193.0 237 43.5
BcaC08g45887 Brassica carinata HOM05D001860 ORTHO05D004922 4.4e-47 192.2 131 70.2
C06p36870 Brassica napus HOM05D000005 ORTHO05D042562 1.3e-46 190.7 271 44.3
AagrBONN_evm.TU.Sc2ySwM_368.914 Anthoceros agrestis HOM05D001860 ORTHO05D004922 1.7e-46 190.3 197 51.8
FAN17G3114 Fragaria x ananassa HOM05D001860 ORTHO05D004922 2.4e-45 186.4 216 52.3
A07p31570 Brassica napus HOM05D001860 ORTHO05D004922 2.3e-43 179.9 120 70.8
Prupe.1G276900 Prunus persica HOM05D001860 ORTHO05D004922 1.9e-42 176.8 151 62.9
Sp5g24620 Schrenkiella parvula HOM05D001860 ORTHO05D004922 4.3e-42 175.6 144 60.4
SMO137G0248 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 2.4e-40 169.9 190 46.3
PGR102G3336 Punica granatum HOM05D001860 ORTHO05D004922 3.4e-39 166.0 151 55.6
Gohir.A13G076700 Gossypium hirsutum HOM05D001860 ORTHO05D004922 2.9e-38 162.9 151 56.3
Gohir.D13G076400 Gossypium hirsutum HOM05D001860 ORTHO05D004922 6.4e-38 161.8 151 55.6
C06p40370 Brassica napus HOM05D001860 ORTHO05D004922 1.5e-34 150.6 121 59.5
Oeu028272.1 Olea europaea HOM05D001860 ORTHO05D004922 1.5e-31 140.6 116 57.8
Ah.02g129590 Amaranthus hybridus HOM05D001860 ORTHO05D004922 6.4e-30 135.2 218 39.4
MCO03G556 Micromonas commoda HOM05D001860 ORTHO05D004922 1.1e-29 134.4 186 40.3
MCO09G753 Micromonas commoda HOM05D001860 ORTHO05D004922 2.4e-29 133.3 145 44.8
CBR_g41443 Chara braunii HOM05D001860 ORTHO05D004922 3.2e-29 132.9 186 40.9
BcaB03g14717 Brassica carinata HOM05D001860 ORTHO05D004922 1.3e-27 127.5 127 53.5
PRCOL_00000783 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 3.9e-27 125.9 158 44.3
AUR62005816 Chenopodium quinoa HOM05D001860 ORTHO05D004922 9.6e-26 121.3 130 49.2
Sc11g0002060 Simmondsia chinensis HOM05D001860 ORTHO05D004922 1.6e-25 120.6 129 51.2
CSS0019961 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 2.1e-25 120.2 130 48.5
Cre07.g342550 Chlamydomonas reinhardtii HOM05D001860 ORTHO05D004922 2.0e-23 113.6 185 36.8
PRCOL_00003589 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 2.5e-21 106.7 184 36.4
Thhalv10019188m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 7.1e-21 105.1 96 53.1
CSS0034144 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 3.5e-20 102.8 84 56.0
CSS0016207 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 8.7e-19 98.2 77 57.1
Dinv16666 Davidia involucrata HOM05D001860 ORTHO05D004922 4.5e-15 85.9 99 47.5
Cpa.g.sc350.4 Carica papaya HOM05D001860 ORTHO05D004922 2.9e-14 83.2 86 48.8
PRCOL_00001331 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 7.1e-13 78.6 168 32.1
VMungo1383G2064 Vigna mungo HOM05D001860 ORTHO05D004922 6.0e-12 75.5 97 41.2
Thecc.01G276100 Theobroma cacao HOM05D001860 ORTHO05D004922 1.0e-11 74.7 84 44.0
CBR_g34579 Chara braunii HOM05D001860 ORTHO05D019626 3.9e-11 72.8 173 34.7
MCO03G203 Micromonas commoda HOM05D023757 ORTHO05D024904 4.8e-09 65.9 146 32.9
AagrBONN_evm.TU.Sc2ySwM_368.1265 Anthoceros agrestis HOM05D019459 ORTHO05D019626 1.8e-08 63.9 175 29.7
VMungo1127G0051 Vigna mungo HOM05D001535 ORTHO05D004010 2.4e-08 63.5 169 31.4
Phvul.011G011900 Phaseolus vulgaris HOM05D001535 ORTHO05D004010 1.5e-07 60.8 172 29.7
arahy.Tifrunner.gnm1.ann1.661SM0 Arachis hypogaea HOM05D001860 ORTHO05D004922 2.0e-07 60.5 71 47.9
Cfa024139 Carpinus fangiana HOM05D001860 ORTHO05D004922 3.4e-07 59.7 160 30.0
Mapoly0068s0103 Marchantia polymorpha HOM05D019459 ORTHO05D019626 4.5e-07 59.3 113 34.5
PGSC0003DMG400018641 Solanum tuberosum HOM05D001535 ORTHO05D003710 5.0e-06 55.8 184 28.8


User provided reference genes

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