Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G28600 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 9.6e-77 290.0 142 100.0
Sp5g24560 Schrenkiella parvula HOM05D004542 ORTHO05D005380 2.0e-58 229.2 138 82.6
Carub.0001s2428 Capsella rubella HOM05D004542 ORTHO05D005380 2.4e-51 205.7 142 73.9
BolC5t31159H Brassica oleracea HOM05D004542 ORTHO05D005380 5.5e-48 194.5 139 69.1
A07p13070 Brassica napus HOM05D004542 ORTHO05D005380 7.2e-48 194.1 141 68.8
C05p24230 Brassica napus HOM05D004542 ORTHO05D005380 1.2e-47 193.4 139 68.3
Aa31LG7G8390 Aethionema arabicum HOM05D004542 ORTHO05D005380 2.1e-47 192.6 138 71.0
Thhalv10009076m.g Eutrema salsugineum HOM05D004542 ORTHO05D005380 2.7e-47 192.2 138 71.0
AL1G38970 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 4.6e-47 191.4 135 71.9
BcaC06g35127 Brassica carinata HOM05D004542 ORTHO05D005380 6.1e-47 191.0 139 68.3
BraA07t29078Z Brassica rapa HOM05D004542 ORTHO05D005380 6.1e-47 191.0 141 67.4
CARHR025220 Cardamine hirsuta HOM05D004542 ORTHO05D005380 6.1e-47 191.0 135 70.4
BcaC05g26392 Brassica carinata HOM05D004542 ORTHO05D005380 7.9e-47 190.7 139 68.3
THA.LOC104808670 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 7.9e-47 190.7 142 68.3
C07p19550 Brassica napus HOM05D004542 ORTHO05D005380 1.0e-46 190.3 139 68.3
BolC7t42472H Brassica oleracea HOM05D004542 ORTHO05D005380 1.0e-46 190.3 139 68.3
AT1G26740 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 1.8e-46 189.5 135 71.1
BcaB03g14086 Brassica carinata HOM05D004542 ORTHO05D005380 2.3e-46 189.1 138 67.4
BraA09t39513Z Brassica rapa HOM05D004542 ORTHO05D005380 3.3e-45 185.3 139 66.2
A09p40150 Brassica napus HOM05D004542 ORTHO05D005380 9.7e-45 183.7 139 65.5
THA.LOC104822040 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 3.7e-44 181.8 143 65.7
Cpa.g.sc69.70 Carica papaya HOM05D004542 ORTHO05D005380 8.5e-41 170.6 138 64.5
TWI09G1372 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 1.1e-40 170.2 138 62.3
Duzib248G0510 Durio zibethinus HOM05D004542 ORTHO05D005380 2.7e-39 165.6 142 59.2
Thecc.02G341300 Theobroma cacao HOM05D004542 ORTHO05D005380 2.7e-39 165.6 142 59.2
TWI73G0467 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 1.4e-38 163.3 138 60.9
Atru.chr11.1738 Acer truncatum HOM05D004542 ORTHO05D005380 7.4e-37 157.5 130 63.8
Potri.010G165100 Populus trichocarpa HOM05D004542 ORTHO05D005380 1.3e-36 156.8 131 61.1
Duzib251G0803 Durio zibethinus HOM05D004542 ORTHO05D005380 3.7e-36 155.2 142 56.3
Manes.01G033600 Manihot esculenta HOM05D004542 ORTHO05D005380 3.1e-35 152.1 138 58.0
Ciclev10033055m.g Citrus clementina HOM05D004542 ORTHO05D005380 9.1e-35 150.6 130 59.2
CANSAT21G2357 Cannabis sativa HOM05D004542 ORTHO05D005380 2.0e-34 149.4 130 60.8
CiPaw.06G087700 Carya illinoinensis HOM05D004542 ORTHO05D005380 4.5e-34 148.3 124 57.3
Cpa.g.sc57.38 Carica papaya HOM05D004542 ORTHO05D005380 5.9e-34 147.9 117 62.4
CSS0014017 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 7.7e-34 147.5 143 55.9
CSS0031140 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 7.7e-34 147.5 143 55.9
Sp1g22070 Schrenkiella parvula HOM05D004542 ORTHO05D005380 1.0e-33 147.1 114 66.7
Dinv07945 Davidia involucrata HOM05D004542 ORTHO05D005380 1.3e-33 146.7 126 62.7
Cfa004898 Carpinus fangiana HOM05D004542 ORTHO05D005380 5.0e-33 144.8 118 60.2
RcHm_v2.0_Chr4g0415001 Rosa chinensis HOM05D004542 ORTHO05D005380 1.1e-32 143.7 131 55.7
Potri.008G090100 Populus trichocarpa HOM05D004542 ORTHO05D005380 2.5e-32 142.5 139 55.4
Prupe.1G009500 Prunus persica HOM05D004542 ORTHO05D005380 3.2e-32 142.1 142 51.4
Actinidia17747 Actinidia chinensis HOM05D004542 ORTHO05D005380 5.5e-32 141.4 144 55.6
Migut.L01259 Erythranthe guttata HOM05D004542 ORTHO05D005380 7.2e-32 141.0 142 54.2
Actinidia31969 Actinidia chinensis HOM05D004542 ORTHO05D005380 9.4e-32 140.6 122 59.0
QL05p050003 Quercus lobata HOM05D004542 ORTHO05D005380 9.4e-32 140.6 123 59.3
Cc00_g16630 Coffea canephora HOM05D004542 ORTHO05D005380 1.6e-31 139.8 140 55.7
MD04G1010200 Malus domestica HOM05D004542 ORTHO05D005380 1.6e-31 139.8 125 56.8
Nitab4.5_0000391g0330 Nicotiana tabacum HOM05D004542 ORTHO05D005380 3.6e-31 138.7 134 54.5
TAR622G0172 Trochodendron aralioides HOM05D004542 ORTHO05D005380 1.8e-30 136.3 118 57.6
Gohir.A07G047800 Gossypium hirsutum HOM05D004542 ORTHO05D005380 4.0e-30 135.2 146 52.1
Solyc04g005590.3 Solanum lycopersicum HOM05D004542 ORTHO05D005380 4.0e-30 135.2 144 54.2
FAN07G0300 Fragaria x ananassa HOM05D004542 ORTHO05D005380 5.2e-30 134.8 130 51.5
EL10Ac2g02750 Beta vulgaris HOM05D004542 ORTHO05D005380 6.7e-30 134.4 123 57.7
PGSC0003DMG400002854 Solanum tuberosum HOM05D004542 ORTHO05D005380 6.7e-30 134.4 144 53.5
AT1G69485 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 8.8e-30 134.0 64 95.3
RcHm_v2.0_Chr6g0251041 Rosa chinensis HOM05D004542 ORTHO05D005380 1.2e-29 133.7 131 55.0
Aqoxy3G03464 Aquilegia oxysepala HOM05D004542 ORTHO05D005380 1.5e-29 133.3 141 52.5
FvH4_4g13880 Fragaria vesca HOM05D004542 ORTHO05D005380 1.5e-29 133.3 130 50.8
FAN12G3669 Fragaria x ananassa HOM05D004542 ORTHO05D005380 1.5e-29 133.3 130 50.8
Sopen04g001630 Solanum pennellii HOM05D004542 ORTHO05D005380 1.5e-29 133.3 123 58.5
RcHm_v2.0_Chr4g0414951 Rosa chinensis HOM05D004542 ORTHO05D005380 2.0e-29 132.9 122 56.6
ClCG05G024060 Citrullus lanatus HOM05D004542 ORTHO05D005380 3.3e-29 132.1 140 49.3
Gohir.D07G052100 Gossypium hirsutum HOM05D004542 ORTHO05D005380 3.3e-29 132.1 153 50.3
Gorai.001G055100 Gossypium raimondii HOM05D004542 ORTHO05D005380 5.7e-29 131.3 155 49.7
Peaxi162Scf00222g00329 Petunia axillaris HOM05D004542 ORTHO05D005380 5.7e-29 131.3 142 50.0
Glyma.05G118100 Glycine max HOM05D004542 ORTHO05D005380 7.5e-29 131.0 129 51.9
arahy.Tifrunner.gnm1.ann1.53F0XR Arachis hypogaea HOM05D004542 ORTHO05D005380 9.7e-29 130.6 129 57.4
arahy.Tifrunner.gnm1.ann1.H527P9 Arachis hypogaea HOM05D004542 ORTHO05D005380 9.7e-29 130.6 129 57.4
CsaV3_5G032980 Cucumis sativus L. HOM05D004542 ORTHO05D005380 9.7e-29 130.6 110 57.3
Sc14g0007580 Simmondsia chinensis HOM05D004542 ORTHO05D005380 9.7e-29 130.6 125 59.2
Solyc05g013190.4 Solanum lycopersicum HOM05D004542 ORTHO05D005380 9.7e-29 130.6 136 53.7
Sopen05g007930 Solanum pennellii HOM05D004542 ORTHO05D005380 9.7e-29 130.6 136 53.7
Nitab4.5_0013306g0010 Nicotiana tabacum HOM05D004542 ORTHO05D005380 1.3e-28 130.2 135 51.1
Sabra08G0067500 Salix brachista HOM05D004542 ORTHO05D005380 1.3e-28 130.2 150 51.3
Lsat_1_v5_gn_8_48901 Lactuca sativa HOM05D004542 ORTHO05D005380 1.7e-28 129.8 130 55.4
Peaxi162Scf00023g02531 Petunia axillaris HOM05D004542 ORTHO05D005380 1.7e-28 129.8 144 50.7
Sed0021036 Sechium edule HOM05D004542 ORTHO05D005380 2.2e-28 129.4 140 50.0
MELO3C012119.2 Cucumis melo HOM05D004542 ORTHO05D005380 2.8e-28 129.0 106 59.4
Nn3g17306 Nelumbo nucifera HOM05D004542 ORTHO05D005380 3.7e-28 128.6 124 57.3
FAN22G1961 Fragaria x ananassa HOM05D004542 ORTHO05D005380 8.2e-28 127.5 130 50.0
AUR62031723 Chenopodium quinoa HOM05D004542 ORTHO05D005380 1.1e-27 127.1 121 55.4
Hma1.2p1_0357F.1_g134240 Hydrangea macrophylla HOM05D004542 ORTHO05D005380 1.1e-27 127.1 99 64.6
MSTRG.2336 Avicennia marina HOM05D004542 ORTHO05D005380 1.8e-27 126.3 139 50.4
HanXRQChr12g0361941 Helianthus annuus HOM05D004542 ORTHO05D005380 1.8e-27 126.3 113 58.4
SalBow1G8597 Salvia bowleyana HOM05D004542 ORTHO05D005380 1.8e-27 126.3 120 54.2
Psat0s1693g0080 Pisum sativum HOM05D004542 ORTHO05D005380 2.4e-27 125.9 138 48.6
ECA233G6069 Erigeron canadensis HOM05D004542 ORTHO05D005380 7.0e-27 124.4 113 59.3
HanXRQChr15g0476941 Helianthus annuus HOM05D004542 ORTHO05D005380 7.0e-27 124.4 110 60.0
Nn3g18387 Nelumbo nucifera HOM05D004542 ORTHO05D005380 9.1e-27 124.0 115 56.5
TPR.G5742 Trifolium pratense HOM05D004542 ORTHO05D005380 1.2e-26 123.6 138 49.3
PSO063G3361 Papaver somniferum HOM05D004542 ORTHO05D005380 2.0e-26 122.9 80 73.8
Ah.08g212630 Amaranthus hybridus HOM05D004542 ORTHO05D005380 4.5e-26 121.7 123 52.0
Eucgr.D00185 Eucalyptus grandis HOM05D004542 ORTHO05D005380 7.7e-26 120.9 105 58.1
Medtr1g025320 Medicago truncatula HOM05D004542 ORTHO05D005380 7.7e-26 120.9 111 55.9
Oeu001710.1 Olea europaea HOM05D004542 ORTHO05D005380 1.0e-25 120.6 140 50.7
PGR083G2602 Punica granatum HOM05D004542 ORTHO05D005380 1.0e-25 120.6 120 52.5
Sc03g0001820 Simmondsia chinensis HOM05D004542 ORTHO05D005380 1.7e-25 119.8 142 49.3
SalBow1G4390 Salvia bowleyana HOM05D004542 ORTHO05D005380 2.2e-25 119.4 108 55.6
Lalb_Chr10g0097781 Lupinus albus HOM05D004542 ORTHO05D005380 2.9e-25 119.0 132 51.5
MBI02_g20485_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 3.8e-25 118.6 124 49.2
VMungo0251G2924 Vigna mungo HOM05D004542 ORTHO05D005380 3.8e-25 118.6 112 52.7
Glyma.08G073000 Glycine max HOM05D004542 ORTHO05D005380 5.0e-25 118.2 130 50.0
SGA_v2.0_scaffold455G51899 Striga asiatica HOM05D004542 ORTHO05D005380 5.0e-25 118.2 118 55.9
CDE04G0708 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 8.5e-25 117.5 98 56.1
SalBow1G7833 Salvia bowleyana HOM05D004542 ORTHO05D005380 1.1e-24 117.1 98 57.1
ECA246G0207 Erigeron canadensis HOM05D004542 ORTHO05D005380 3.2e-24 115.5 130 52.3
Lj4g0012875 Lotus japonicus HOM05D004542 ORTHO05D005380 4.2e-24 115.2 106 53.8
CDE07G0585 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 9.4e-24 114.0 99 55.6
Lj4g0007672 Lotus japonicus HOM05D004542 ORTHO05D005380 1.2e-23 113.6 115 51.3
Ca_18347_v3 Cicer arietinum L. HOM05D004542 ORTHO05D005380 1.6e-23 113.2 143 46.2
Phvul.002G208200 Phaseolus vulgaris HOM05D004542 ORTHO05D005380 3.6e-23 112.1 99 55.6
CANSAT21G0056 Cannabis sativa HOM05D004542 ORTHO05D005380 4.7e-23 111.7 113 56.6
COL.COLO4_32021 Corchorus olitorius HOM05D004542 ORTHO05D005380 6.1e-23 111.3 118 55.1
Zm00001eb402400 Zea mays HOM05D004542 ORTHO05D005380 6.1e-23 111.3 63 77.8
Os03g0168900 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 1.8e-22 109.8 62 74.2
Os10g0407100 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 3.0e-22 109.0 61 75.4
DCAR_027429 Daucus carota HOM05D004542 ORTHO05D005380 5.2e-22 108.2 195 39.5
Carub.0002s1610 Capsella rubella HOM05D004542 ORTHO05D005380 8.8e-22 107.5 51 92.2
AUR62032610 Chenopodium quinoa HOM05D004542 ORTHO05D005380 8.8e-22 107.5 155 42.6
TPR.G8852 Trifolium pratense HOM05D004542 ORTHO05D005380 1.2e-21 107.1 132 43.9
Glyma.06G320500 Glycine max HOM05D004542 ORTHO05D005380 2.6e-21 105.9 109 50.5
Haze_11968 Corylus avellana HOM05D004542 ORTHO05D005380 4.4e-21 105.1 94 57.4
SalBow1G1756 Salvia bowleyana HOM05D004542 ORTHO05D005380 5.7e-21 104.8 60 73.3
Nitab4.5_0001077g0020 Nicotiana tabacum HOM05D004542 ORTHO05D005380 9.8e-21 104.0 136 47.1
Manes.05G105400 Manihot esculenta HOM05D004542 ORTHO05D005380 5.4e-19 98.2 112 50.0
Rhsim05G0092000 Rhododendron simsii HOM05D004542 ORTHO05D005380 9.1e-19 97.4 131 45.8
RhsimUnG0183400 Rhododendron simsii HOM05D004542 ORTHO05D005380 9.1e-19 97.4 131 45.8
MD13G1284400 Malus domestica HOM05D002269 ORTHO05D005380 1.6e-18 96.7 92 56.5
Ciclev10013639m.g Citrus clementina HOM05D004542 ORTHO05D005380 5.9e-18 94.7 120 46.7
Sopen03g017060 Solanum pennellii HOM05D004542 ORTHO05D005380 5.9e-18 94.7 65 64.6
Hund04421 Selenicereus undatus HOM05D004542 ORTHO05D005380 7.2e-16 87.8 114 47.4
Oeu054854.1 Olea europaea HOM05D004542 ORTHO05D005380 1.2e-15 87.0 115 50.4
AagrBONN_evm.TU.Sc2ySwM_228.5417 Anthoceros agrestis HOM05D004542 ORTHO05D005380 2.3e-14 82.8 56 66.1
COL.COLO4_27991 Corchorus olitorius HOM05D004542 ORTHO05D005380 4.0e-14 82.0 105 49.5
Mapoly0152s0024 Marchantia polymorpha HOM05D004542 ORTHO05D005380 1.2e-13 80.5 51 62.7
Pp3c1_32410 Physcomitrium patens HOM05D004542 ORTHO05D005380 1.5e-13 80.1 53 60.4
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 1.3e-12 77.0 50 58.0
Sabra10G0125700 Salix brachista HOM05D004542 ORTHO05D005380 3.7e-12 75.5 96 46.9
SMO358G0607 Selaginella moellendorffii HOM05D000228 ORTHO05D005112 4.9e-12 75.1 49 65.3
PSO782G1969 Papaver somniferum HOM05D004542 ORTHO05D005380 6.3e-12 74.7 43 83.7
Glyma.04G115800 Glycine max HOM05D004542 ORTHO05D005380 4.1e-11 72.0 93 47.3
Nitab4.5_0000014g0150 Nicotiana tabacum HOM05D004542 ORTHO05D005380 7.0e-11 71.2 133 37.6
Zm00001eb005320 Zea mays HOM05D004542 ORTHO05D005380 1.2e-10 70.5 40 75.0
MBI02_g44667_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 1.5e-08 63.5 34 82.4
C06p40430 Brassica napus HOM05D030737 ORTHO05D028024 7.3e-08 61.2 39 66.7
BolC6t39389H Brassica oleracea HOM05D030737 ORTHO05D028024 7.3e-08 61.2 39 66.7
MCO02G272 Micromonas commoda HOM05D004542 ORTHO05D005380 6.1e-07 58.2 55 45.5
Ah.15g093720 Amaranthus hybridus HOM05D000143 ORTHO05D000072 3.0e-06 55.8 61 49.2
PGSC0003DMG400005564 Solanum tuberosum HOM05D004542 ORTHO05D005380 3.0e-06 55.8 69 52.2
A07p35770 Brassica napus HOM05D030737 ORTHO05D028024 6.8e-06 54.7 30 66.7
unitig_8.g3954 Utricularia gibba HOM05D006796 ORTHO05D008615 6.8e-06 54.7 37 67.6


User provided reference genes

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