Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G28500 Arabidopsis lyrata HOM05D004550 ORTHO05D005340 5.6e-127 457.6 230 100.0
AT1G69390 Arabidopsis thaliana HOM05D004550 ORTHO05D005340 3.9e-120 434.9 230 95.7
CARHR062270 Cardamine hirsuta HOM05D004550 ORTHO05D005340 6.9e-109 397.5 230 90.0
Carub.0002s1599 Capsella rubella HOM05D004550 ORTHO05D005340 5.0e-107 391.3 230 87.8
Thhalv10019103m.g Eutrema salsugineum HOM05D004550 ORTHO05D005340 1.1e-103 380.2 226 87.2
Sp5g24440 Schrenkiella parvula HOM05D004550 ORTHO05D005340 8.2e-102 374.0 226 86.7
BolC2t08705H Brassica oleracea HOM05D004550 ORTHO05D005340 5.7e-95 351.3 227 82.4
C02p26330 Brassica napus HOM05D004550 ORTHO05D005340 2.2e-94 349.4 227 81.9
BcaB05g24446 Brassica carinata HOM05D004550 ORTHO05D005340 1.4e-93 346.7 227 82.8
Aa31LG4G11470 Aethionema arabicum HOM05D004550 ORTHO05D005340 3.1e-93 345.5 221 83.7
A07p35690 Brassica napus HOM05D004550 ORTHO05D005340 2.0e-92 342.8 227 81.1
BolC6t39378H Brassica oleracea HOM05D004550 ORTHO05D005340 2.6e-92 342.4 227 79.7
BraA07t31157Z Brassica rapa HOM05D004550 ORTHO05D005340 1.7e-91 339.7 227 80.6
C06p40530 Brassica napus HOM05D004550 ORTHO05D005340 2.9e-91 339.0 227 78.9
BcaB03g15897 Brassica carinata HOM05D004550 ORTHO05D005340 2.2e-86 322.8 227 76.2
A02p15870 Brassica napus HOM05D004550 ORTHO05D005340 7.7e-84 314.3 194 84.0
THA.LOC104822027 Tarenaya hassleriana HOM05D004550 ORTHO05D005340 1.5e-82 310.1 227 74.0
BcaC03g15080 Brassica carinata HOM05D004550 ORTHO05D005340 4.0e-80 302.0 188 83.0
Duzib251G0963 Durio zibethinus HOM05D004550 ORTHO05D005340 1.0e-75 287.3 227 68.7
Duzib268G1083 Durio zibethinus HOM05D004550 ORTHO05D005340 8.5e-75 284.3 227 67.0
Ciclev10032704m.g Citrus clementina HOM05D004550 ORTHO05D005340 2.1e-73 279.6 227 67.4
Eucgr.B03186 Eucalyptus grandis HOM05D004550 ORTHO05D005340 6.1e-73 278.1 226 64.6
QL03p070023 Quercus lobata HOM05D004550 ORTHO05D005340 1.8e-72 276.6 227 63.9
FvH4_4g30590 Fragaria vesca HOM05D004550 ORTHO05D005340 3.0e-72 275.8 226 66.4
FAN17G0531 Fragaria x ananassa HOM05D004550 ORTHO05D005340 4.0e-72 275.4 228 66.2
Manes.05G107100 Manihot esculenta HOM05D004550 ORTHO05D005340 5.2e-72 275.0 227 61.7
Thecc.02G338200 Theobroma cacao HOM05D004550 ORTHO05D005340 5.2e-72 275.0 227 66.1
CiPaw.06G089400 Carya illinoinensis HOM05D004550 ORTHO05D005340 8.8e-72 274.2 228 64.5
FAN07G0354 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.2e-71 273.9 228 65.8
TWI31G0520 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 1.2e-71 273.9 227 66.1
Atru.chr11.1702 Acer truncatum HOM05D004550 ORTHO05D005340 3.4e-71 272.3 227 63.9
RcHm_v2.0_Chr4g0438981 Rosa chinensis HOM05D004550 ORTHO05D005340 3.4e-71 272.3 226 65.5
Cfa008917 Carpinus fangiana HOM05D004550 ORTHO05D005340 1.7e-70 270.0 227 63.4
Gohir.D12G165500 Gossypium hirsutum HOM05D004550 ORTHO05D005340 4.8e-70 268.5 226 63.7
Gorai.008G178200 Gossypium raimondii HOM05D004550 ORTHO05D005340 4.8e-70 268.5 226 63.7
CiPaw.05G128700 Carya illinoinensis HOM05D004550 ORTHO05D005340 8.3e-70 267.7 228 64.9
ClCG09G021950 Citrullus lanatus HOM05D004550 ORTHO05D005340 8.3e-70 267.7 228 63.2
CsaV3_5G025150 Cucumis sativus L. HOM05D004550 ORTHO05D005340 8.3e-70 267.7 228 63.2
Gohir.A12G162200 Gossypium hirsutum HOM05D004550 ORTHO05D005340 1.4e-69 266.9 226 63.3
Prupe.1G281100 Prunus persica HOM05D004550 ORTHO05D005340 1.2e-68 263.8 227 63.9
PGR102G3210 Punica granatum HOM05D004550 ORTHO05D005340 1.2e-68 263.8 227 62.1
TWI79G1514 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 1.2e-68 263.8 228 63.2
CSS0021997 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 2.7e-68 262.7 226 63.3
Potri.010G162600 Populus trichocarpa HOM05D004550 ORTHO05D005340 2.7e-68 262.7 227 61.2
Glyma.02G112600 Glycine max HOM05D004550 ORTHO05D005340 4.5e-68 261.9 228 63.6
Lj2g0016497 Lotus japonicus HOM05D004550 ORTHO05D005340 7.7e-68 261.2 228 61.4
Phvul.002G090800 Phaseolus vulgaris HOM05D004550 ORTHO05D005340 7.7e-68 261.2 231 64.5
FAN12G3802 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.3e-67 260.4 218 66.1
CSS0045485 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 2.3e-67 259.6 226 62.8
VMungo1215G2831 Vigna mungo HOM05D004550 ORTHO05D005340 2.3e-67 259.6 230 64.3
Cpa.g.sc1.80 Carica papaya HOM05D004550 ORTHO05D005340 3.8e-67 258.8 199 68.3
arahy.Tifrunner.gnm1.ann1.M1L69X Arachis hypogaea HOM05D004550 ORTHO05D005340 1.1e-66 257.3 230 60.4
FAN22G1576 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.1e-66 257.3 228 62.3
Potri.008G092300 Populus trichocarpa HOM05D004550 ORTHO05D005340 1.1e-66 257.3 227 60.8
MELO3C002974.2 Cucumis melo HOM05D004550 ORTHO05D005340 1.5e-66 256.9 256 56.2
Glyma.01G054200 Glycine max HOM05D004550 ORTHO05D005340 4.2e-66 255.4 228 62.3
Hma1.2p1_0354F.1_g133690 Hydrangea macrophylla HOM05D004550 ORTHO05D005340 1.6e-65 253.4 227 64.3
Lalb_Chr17g0340931 Lupinus albus HOM05D004550 ORTHO05D005340 1.6e-65 253.4 235 61.3
Dinv34106 Davidia involucrata HOM05D004550 ORTHO05D005340 2.8e-65 252.7 225 63.1
COL.COLO4_27949 Corchorus olitorius HOM05D004550 ORTHO05D005340 3.6e-65 252.3 198 66.7
Ca_27938_v3 Cicer arietinum L. HOM05D004550 ORTHO05D005340 4.7e-65 251.9 231 61.0
Sed0017620 Sechium edule HOM05D004550 ORTHO05D005340 4.7e-65 251.9 228 61.0
TAR629G0577 Trochodendron aralioides HOM05D004550 ORTHO05D005340 1.4e-64 250.4 226 60.6
Rhsim12G0077600 Rhododendron simsii HOM05D004550 ORTHO05D005340 2.3e-64 249.6 230 60.9
Nn4g23307 Nelumbo nucifera HOM05D004550 ORTHO05D005340 5.2e-64 248.4 226 60.6
Migut.L01230 Erythranthe guttata HOM05D004550 ORTHO05D005340 6.8e-64 248.1 226 60.6
Medtr5g043020 Medicago truncatula HOM05D004550 ORTHO05D005340 1.5e-63 246.9 229 59.0
Cc11_g12470 Coffea canephora HOM05D004550 ORTHO05D005340 2.0e-63 246.5 226 60.6
Psat2g127440 Pisum sativum HOM05D004550 ORTHO05D005340 2.6e-63 246.1 226 58.4
MSTRG.7770 Avicennia marina HOM05D004550 ORTHO05D005340 7.5e-63 244.6 226 59.7
arahy.Tifrunner.gnm1.ann1.F9ESEJ Arachis hypogaea HOM05D004550 ORTHO05D005340 1.7e-62 243.4 224 58.9
Haze_11945 Corylus avellana HOM05D004550 ORTHO05D005340 2.2e-62 243.0 175 68.6
Sabra08G0069100 Salix brachista HOM05D004550 ORTHO05D005340 3.7e-62 242.3 275 50.9
PGSC0003DMG400028333 Solanum tuberosum HOM05D004550 ORTHO05D005340 1.1e-61 240.7 227 59.5
Nitab4.5_0000334g0090 Nicotiana tabacum HOM05D004550 ORTHO05D005340 1.4e-61 240.4 227 60.8
MBI19_g03106_MAGBIO Magnolia biondii HOM05D004550 ORTHO05D005340 2.4e-61 239.6 227 58.6
Nitab4.5_0011843g0010 Nicotiana tabacum HOM05D004550 ORTHO05D005340 2.4e-61 239.6 232 61.6
Peaxi162Scf00364g00223 Petunia axillaris HOM05D004550 ORTHO05D005340 3.1e-61 239.2 228 58.3
Actinidia31956 Actinidia chinensis HOM05D004550 ORTHO05D005340 4.1e-61 238.8 230 59.1
CAN.G1200.3 Capsicum annuum HOM05D004550 ORTHO05D005340 4.1e-61 238.8 226 59.3
GSVIVG01001334001 Vitis vinifera HOM05D004550 ORTHO05D005340 4.1e-61 238.8 228 60.5
Solyc05g012710.4 Solanum lycopersicum HOM05D004550 ORTHO05D005340 5.4e-61 238.4 227 58.6
Sopen05g007540 Solanum pennellii HOM05D004550 ORTHO05D005340 5.4e-61 238.4 227 58.6
DCAR_007179 Daucus carota HOM05D004550 ORTHO05D005340 1.6e-60 236.9 213 60.6
Manes.05G087100 Manihot esculenta HOM05D004550 ORTHO05D005340 2.0e-60 236.5 165 70.3
DCAR_030983 Daucus carota HOM05D004550 ORTHO05D005340 2.7e-60 236.1 200 64.0
TPR.G30749 Trifolium pratense HOM05D004550 ORTHO05D005340 7.8e-60 234.6 225 58.2
Sabra10G0123800 Salix brachista HOM05D001252 ORTHO05D005340 1.7e-59 233.4 199 61.3
Lalb_Chr04g0255821 Lupinus albus HOM05D004550 ORTHO05D005340 2.9e-59 232.6 234 57.7
Nn3g17356 Nelumbo nucifera HOM05D004550 ORTHO05D005340 2.5e-58 229.6 232 57.8
SGA_v2.0_scaffold16G07747 Striga asiatica HOM05D004550 ORTHO05D005340 4.3e-58 228.8 171 70.2
vmacro01339 Vaccinium macrocarpon HOM05D004550 ORTHO05D005340 4.3e-58 228.8 203 62.1
TAR371G1135 Trochodendron aralioides HOM05D004550 ORTHO05D005340 7.3e-58 228.0 156 75.0
Aqoxy3G03523 Aquilegia oxysepala HOM05D004550 ORTHO05D005340 9.5e-58 227.6 232 56.9
Actinidia19927 Actinidia chinensis HOM05D004550 ORTHO05D005340 1.2e-57 227.3 201 62.7
PSO063G5570 Papaver somniferum HOM05D004550 ORTHO05D005340 2.1e-57 226.5 234 55.1
CANSAT64G2188 Cannabis sativa HOM05D004550 ORTHO05D005340 2.8e-57 226.1 231 55.8
Oeu021093.1 Olea europaea HOM05D004550 ORTHO05D005340 2.8e-57 226.1 155 72.3
Sc04g0007790 Simmondsia chinensis HOM05D004550 ORTHO05D005340 2.8e-57 226.1 231 55.8
Ah.02g129300 Amaranthus hybridus HOM05D004550 ORTHO05D005340 3.6e-57 225.7 243 53.9
Lsat_1_v5_gn_8_46800 Lactuca sativa HOM05D004550 ORTHO05D005340 8.0e-57 224.6 231 56.7
TAR374G1091 Trochodendron aralioides HOM05D004550 ORTHO05D005340 1.4e-56 223.8 154 72.7
SGA_v2.0_scaffold36G14423 Striga asiatica HOM05D004550 ORTHO05D005340 3.1e-56 222.6 227 57.3
RcHm_v2.0_Chr2g0166971 Rosa chinensis HOM05D004550 ORTHO05D005340 4.0e-56 222.2 226 58.0
unitig_21.g20859 Utricularia gibba HOM05D004550 ORTHO05D005340 4.0e-56 222.2 164 68.9
Ah.03g134600 Amaranthus hybridus HOM05D004550 ORTHO05D005340 6.8e-56 221.5 228 55.7
ECA233G5814 Erigeron canadensis HOM05D004550 ORTHO05D005340 1.2e-55 220.7 213 57.7
GSVIVG01011473001 Vitis vinifera HOM05D004550 ORTHO05D005340 1.2e-55 220.7 227 55.1
FvH4_6g47773 Fragaria vesca HOM05D004550 ORTHO05D005340 2.6e-55 219.5 232 56.0
HanXRQChr08g0210541 Helianthus annuus HOM05D004550 ORTHO05D005340 5.8e-55 218.4 227 55.9
HanXRQChr08g0211031 Helianthus annuus HOM05D004550 ORTHO05D005340 5.8e-55 218.4 227 55.9
FAN14G0263 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.7e-54 216.9 155 69.7
PSO063G6186 Papaver somniferum HOM05D004550 ORTHO05D005340 2.2e-54 216.5 226 54.4
Gohir.D02G127801 Gossypium hirsutum HOM05D004550 ORTHO05D005340 3.7e-54 215.7 231 55.4
Gorai.005G143600 Gossypium raimondii HOM05D004550 ORTHO05D005340 3.7e-54 215.7 231 55.4
HanXRQChr12g0362721 Helianthus annuus HOM05D004550 ORTHO05D005340 4.9e-54 215.3 228 54.8
Hund05856 Selenicereus undatus HOM05D004550 ORTHO05D005340 1.1e-53 214.2 212 57.1
EL10Ac6g13282 Beta vulgaris HOM05D004550 ORTHO05D005340 2.4e-53 213.0 255 50.2
FAN05G1708 Fragaria x ananassa HOM05D004550 ORTHO05D005340 5.4e-53 211.8 228 56.1
Os12g0498400 Oryza sativa ssp. japonica HOM05D004550 ORTHO05D005340 6.0e-52 208.4 206 54.9
PSO478G0019 Papaver somniferum HOM05D004550 ORTHO05D005340 1.7e-51 206.8 205 56.1
CDE04G2021 Ceratophyllum demersum HOM05D004550 ORTHO05D005340 3.0e-51 206.1 157 68.2
Prupe.3G261900 Prunus persica HOM05D004550 ORTHO05D005340 5.0e-51 205.3 211 55.9
MD09G1057200 Malus domestica HOM05D004550 ORTHO05D005340 1.1e-50 204.1 211 55.0
HanXRQChr17g0545411 Helianthus annuus HOM05D004550 ORTHO05D005340 6.2e-49 198.4 202 56.4
HPP92_018458 Vanilla planifolia HOM05D004550 ORTHO05D005340 6.2e-49 198.4 209 53.6
ATR0730G201 Amborella trichopoda HOM05D004550 ORTHO05D005340 8.0e-49 198.0 152 67.8
Potri.004G121000 Populus trichocarpa HOM05D004550 ORTHO05D005340 5.4e-45 185.3 138 68.1
MSTRG.729 Avicennia marina HOM05D004550 ORTHO05D005340 1.6e-44 183.7 132 71.2
Sabra04G0067200 Salix brachista HOM05D004550 ORTHO05D005340 1.6e-44 183.7 138 65.2
MELO3C012132.2 Cucumis melo HOM05D004550 ORTHO05D005340 2.1e-44 183.3 223 50.2
AUR62005866 Chenopodium quinoa HOM05D004550 ORTHO05D005340 2.7e-44 183.0 226 49.6
SEGI_17925 Sequoiadendron giganteum HOM05D004550 ORTHO05D005340 1.3e-43 180.6 145 65.5
AUR62032858 Chenopodium quinoa HOM05D004550 ORTHO05D005340 1.7e-43 180.3 226 49.1
CsaV3_5G033110 Cucumis sativus L. HOM05D004550 ORTHO05D005340 5.6e-42 175.3 225 49.8
Sed0010995 Sechium edule HOM05D004550 ORTHO05D005340 8.1e-41 171.4 232 46.6
ClCG05G023910 Citrullus lanatus HOM05D004550 ORTHO05D005340 5.2e-40 168.7 206 49.5
Thecc.02G337600 Theobroma cacao HOM05D004550 ORTHO05D005340 1.2e-39 167.5 109 75.2
Zm00001eb409620 Zea mays HOM05D004550 ORTHO05D005340 2.2e-38 163.3 137 62.8
MD16G1066100 Malus domestica HOM05D004550 ORTHO05D005340 3.2e-37 159.5 100 81.0
Mapoly0021s0017 Marchantia polymorpha HOM05D004550 ORTHO05D005340 1.5e-34 150.6 102 76.5
Pp3c23_20800 Physcomitrium patens HOM05D004550 ORTHO05D005340 5.6e-34 148.7 154 55.8
AagrBONN_evm.TU.Sc2ySwM_344.2821 Anthoceros agrestis HOM05D004550 ORTHO05D005340 2.8e-33 146.4 117 64.1
Pp3c20_5010 Physcomitrium patens HOM05D004550 ORTHO05D005340 5.2e-32 142.1 129 59.7
SMO141G0150 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 5.8e-31 138.7 98 67.3
SMO356G0701 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 7.6e-31 138.3 104 68.3
Pp3c9_20530 Physcomitrium patens HOM05D004550 ORTHO05D005340 2.4e-29 133.3 129 55.0
BcaC08g45895 Brassica carinata HOM05D004550 ORTHO05D005340 1.0e-27 127.9 71 91.5
Actinidia33237 Actinidia chinensis HOM05D004550 ORTHO05D005340 5.1e-27 125.6 150 52.0
C06p37000 Brassica napus HOM05D004550 ORTHO05D005340 1.1e-24 117.9 93 68.8
BolC6t38810H Brassica oleracea HOM05D004550 ORTHO05D005340 1.1e-24 117.9 93 68.8
arahy.Tifrunner.gnm1.ann1.QAIU0T Arachis hypogaea HOM05D004550 ORTHO05D005340 1.5e-23 114.0 75 72.0
BcaB03g15467 Brassica carinata HOM05D004550 ORTHO05D005340 1.3e-22 110.9 64 90.6
Potri.017G088401 Populus trichocarpa HOM05D004550 ORTHO05D005340 5.8e-15 85.5 63 61.9
Cre17.g720350 Chlamydomonas reinhardtii HOM05D004550 ORTHO05D005340 2.2e-14 83.6 103 42.7
PRCOL_00005365 Prasinoderma coloniale HOM05D004550 ORTHO05D005340 2.7e-12 76.6 104 36.5
MCO05G609 Micromonas commoda HOM05D004550 ORTHO05D005340 1.5e-10 70.9 118 34.7


User provided reference genes

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