Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G28250 Arabidopsis lyrata HOM05D004533 ORTHO05D005347 2.1e-143 512.7 321 100.0
AT1G69160 Arabidopsis thaliana HOM05D004533 ORTHO05D005347 8.1e-132 474.2 323 93.5
Carub.0002s1576 Capsella rubella HOM05D004533 ORTHO05D005347 1.1e-120 437.2 322 87.9
CARHR062030 Cardamine hirsuta HOM05D004533 ORTHO05D005347 1.5e-109 400.2 324 85.2
Sp5g24200 Schrenkiella parvula HOM05D004533 ORTHO05D005347 3.7e-108 395.6 327 82.9
Thhalv10018878m.g Eutrema salsugineum HOM05D004533 ORTHO05D005347 2.3e-102 376.3 331 80.1
BcaB03g15876 Brassica carinata HOM05D004533 ORTHO05D005347 2.2e-100 369.8 336 79.5
A07p35490 Brassica napus HOM05D004533 ORTHO05D005347 3.7e-100 369.0 335 78.5
BraA07t31139Z Brassica rapa HOM05D004533 ORTHO05D005347 2.4e-99 366.3 335 77.3
BcaC08g46370 Brassica carinata HOM05D004533 ORTHO05D005347 6.9e-99 364.8 333 78.1
BolC6t39358H Brassica oleracea HOM05D004533 ORTHO05D005347 6.9e-99 364.8 333 78.1
C06p40740 Brassica napus HOM05D004533 ORTHO05D005347 3.4e-98 362.5 333 77.8
BraA02t06624Z Brassica rapa HOM05D004533 ORTHO05D005347 8.5e-97 357.8 329 76.6
BolC2t08676H Brassica oleracea HOM05D004533 ORTHO05D005347 2.1e-95 353.2 328 76.8
C02p26000 Brassica napus HOM05D004533 ORTHO05D005347 2.7e-95 352.8 328 77.1
A02p15640 Brassica napus HOM05D004533 ORTHO05D005347 5.7e-93 345.1 329 76.0
BcaC03g15057 Brassica carinata HOM05D004533 ORTHO05D005347 2.9e-89 332.8 328 75.0
THA.LOC104798855 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 5.2e-62 242.3 326 61.0
THA.LOC104803161 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 5.2e-62 242.3 326 61.0
THA.LOC104822894 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 5.2e-62 242.3 326 61.0
BcaC08g45911 Brassica carinata HOM05D004533 ORTHO05D005347 3.5e-58 229.6 260 66.5
BcaC08g45912 Brassica carinata HOM05D004533 ORTHO05D005347 5.9e-58 228.8 262 66.0
Aa31LG4G11830 Aethionema arabicum HOM05D004533 ORTHO05D005347 4.0e-54 216.1 303 61.4
THA.LOC104821996 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 1.1e-51 208.0 328 52.1
BcaC08g45913 Brassica carinata HOM05D004533 ORTHO05D005347 2.0e-45 187.2 327 52.9
C06p37150 Brassica napus HOM05D004533 ORTHO05D005347 2.7e-42 176.8 246 58.1
Potri.008G098200 Populus trichocarpa HOM05D004533 ORTHO05D005347 6.8e-30 135.6 357 46.5
Duzib251G0596 Durio zibethinus HOM05D004533 ORTHO05D005347 1.2e-29 134.8 351 46.7
Thecc.02G326400 Theobroma cacao HOM05D004533 ORTHO05D005347 2.6e-29 133.7 353 46.7
CiPaw.05G123000 Carya illinoinensis HOM05D004533 ORTHO05D005347 3.4e-29 133.3 349 46.7
Manes.01G025900 Manihot esculenta HOM05D004533 ORTHO05D005347 5.8e-29 132.5 354 40.4
Duzib248G0866 Durio zibethinus HOM05D004533 ORTHO05D005347 2.9e-28 130.2 348 39.4
Potri.010G154200 Populus trichocarpa HOM05D004533 ORTHO05D005347 2.9e-28 130.2 351 43.3
Manes.05G112100 Manihot esculenta HOM05D004533 ORTHO05D005347 8.4e-28 128.6 353 46.5
Sabra10G0118800 Salix brachista HOM05D004533 ORTHO05D005347 1.1e-27 128.3 353 40.5
MD16G1058700 Malus domestica HOM05D004533 ORTHO05D005347 1.9e-27 127.5 342 46.5
Atru.chr11.1592 Acer truncatum HOM05D004533 ORTHO05D005347 3.2e-27 126.7 345 44.9
Gohir.A03G105900 Gossypium hirsutum HOM05D004533 ORTHO05D005347 3.2e-27 126.7 350 34.9
MD13G1059400 Malus domestica HOM05D004533 ORTHO05D005347 4.2e-27 126.3 350 46.0
Duzib268G0904 Durio zibethinus HOM05D004533 ORTHO05D005347 5.4e-27 125.9 351 43.6
Cpa.g.sc1.160 Carica papaya HOM05D004533 ORTHO05D005347 7.1e-27 125.6 344 43.6
Dinv20147 Davidia involucrata HOM05D004533 ORTHO05D005347 7.1e-27 125.6 335 40.3
Haze_11876 Corylus avellana HOM05D004533 ORTHO05D005347 2.1e-26 124.0 350 39.1
Cfa008857 Carpinus fangiana HOM05D004533 ORTHO05D005347 7.8e-26 122.1 346 46.0
Gohir.D02G131100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.3e-25 121.3 347 39.5
Prupe.1G290400 Prunus persica HOM05D004533 ORTHO05D005347 1.3e-25 121.3 357 39.2
Gohir.A13G084500 Gossypium hirsutum HOM05D004533 ORTHO05D005347 8.7e-25 118.6 348 39.4
TPR.G38582 Trifolium pratense HOM05D004533 ORTHO05D005347 8.7e-25 118.6 326 41.7
Gohir.D13G084000 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.1e-24 118.2 348 39.4
Gorai.013G095800 Gossypium raimondii HOM05D004533 ORTHO05D005347 1.1e-24 118.2 348 39.4
Sabra08G0074200 Salix brachista HOM05D004533 ORTHO05D005347 1.9e-24 117.5 358 44.7
Gorai.005G147000 Gossypium raimondii HOM05D004533 ORTHO05D005347 3.3e-24 116.7 348 39.7
Ciclev10032087m.g Citrus clementina HOM05D004533 ORTHO05D005347 7.3e-24 115.5 344 43.0
QL03p073504 Quercus lobata HOM05D004533 ORTHO05D005347 7.3e-24 115.5 348 39.1
Rhsim12G0073600 Rhododendron simsii HOM05D004533 ORTHO05D005347 7.3e-24 115.5 326 36.8
Eucgr.B03139 Eucalyptus grandis HOM05D004533 ORTHO05D005347 1.6e-23 114.4 346 37.6
FAN07G1881 Fragaria x ananassa HOM05D004533 ORTHO05D005347 1.6e-23 114.4 342 44.7
Lalb_Chr17g0341371 Lupinus albus HOM05D004533 ORTHO05D005347 1.6e-23 114.4 330 39.1
PSO478G4496 Papaver somniferum HOM05D004533 ORTHO05D005347 1.6e-23 114.4 365 31.0
TAR374G1471 Trochodendron aralioides HOM05D004533 ORTHO05D005347 2.1e-23 114.0 273 33.3
FAN22G0793 Fragaria x ananassa HOM05D004533 ORTHO05D005347 2.8e-23 113.6 341 45.2
Cc11_g11730 Coffea canephora HOM05D004533 ORTHO05D005347 3.6e-23 113.2 331 35.3
FvH4_4g29630 Fragaria vesca HOM05D004533 ORTHO05D005347 6.2e-23 112.5 341 45.2
FAN12G3098 Fragaria x ananassa HOM05D004533 ORTHO05D005347 6.2e-23 112.5 341 45.2
FAN17G0049 Fragaria x ananassa HOM05D004533 ORTHO05D005347 6.2e-23 112.5 342 45.3
CiPaw.06G093700 Carya illinoinensis HOM05D004533 ORTHO05D005347 1.8e-22 110.9 353 39.7
Ca_05043_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 2.4e-22 110.5 321 41.7
Ca_19594_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 2.4e-22 110.5 321 41.7
Aqoxy3G03701 Aquilegia oxysepala HOM05D004533 ORTHO05D005347 3.1e-22 110.2 353 34.3
Nn4g23503 Nelumbo nucifera HOM05D004533 ORTHO05D005347 3.1e-22 110.2 353 45.3
PSO017G3527 Papaver somniferum HOM05D004533 ORTHO05D005347 5.3e-22 109.4 364 30.8
Medtr5g046750 Medicago truncatula HOM05D004533 ORTHO05D005347 6.9e-22 109.0 305 41.6
MELO3C011411.2 Cucumis melo HOM05D004533 ORTHO05D005347 9.0e-22 108.6 331 29.9
MSTRG.2297 Avicennia marina HOM05D004533 ORTHO05D005347 1.2e-21 108.2 350 29.7
Psat2g098360 Pisum sativum HOM05D004533 ORTHO05D005347 1.2e-21 108.2 333 36.0
Oeu028724.1 Olea europaea HOM05D004533 ORTHO05D005347 2.6e-21 107.1 305 44.9
COL.COLO4_27845 Corchorus olitorius HOM05D004533 ORTHO05D005347 1.3e-20 104.8 357 42.3
CsaV3_6G033770 Cucumis sativus L. HOM05D004533 ORTHO05D005347 2.9e-20 103.6 335 29.0
Sed0020971 Sechium edule HOM05D004533 ORTHO05D005347 2.9e-20 103.6 346 28.9
TAR371G0131 Trochodendron aralioides HOM05D004533 ORTHO05D005347 2.9e-20 103.6 318 43.7
Gorai.008G175700 Gossypium raimondii HOM05D004533 ORTHO05D005347 3.8e-20 103.2 310 35.8
Hma1.2p1_0428F.1_g151070 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 3.8e-20 103.2 280 35.4
Peaxi162Scf00175g00062 Petunia axillaris HOM05D004533 ORTHO05D005347 4.9e-20 102.8 321 39.3
arahy.Tifrunner.gnm1.ann1.PV72KB Arachis hypogaea HOM05D004533 ORTHO05D005347 6.4e-20 102.4 360 40.0
ClCG08G010520 Citrullus lanatus HOM05D004533 ORTHO05D005347 8.4e-20 102.1 332 29.5
Dinv34043 Davidia involucrata HOM05D004533 ORTHO05D005347 3.2e-19 100.1 334 34.7
Lalb_Chr10g0099071 Lupinus albus HOM05D004533 ORTHO05D005347 5.4e-19 99.4 344 37.2
Lj2g0015000 Lotus japonicus HOM05D004533 ORTHO05D005347 7.1e-19 99.0 346 36.7
DCAR_023748 Daucus carota HOM05D004533 ORTHO05D005347 1.6e-18 97.8 338 39.1
CSS0048067 Camellia sinensis var. sinensis HOM05D004533 ORTHO05D005347 3.5e-18 96.7 338 35.8
Solyc05g012030.1 Solanum lycopersicum HOM05D004533 ORTHO05D005347 7.8e-18 95.5 309 43.4
arahy.Tifrunner.gnm1.ann1.NK9Z7F Arachis hypogaea HOM05D004533 ORTHO05D005347 3.0e-17 93.6 337 40.7
RcHm_v2.0_Chr4g0437861 Rosa chinensis HOM05D004533 ORTHO05D005347 3.0e-17 93.6 344 42.4
TWI79G0987 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 3.0e-17 93.6 336 35.1
EL10Ac6g15027 Beta vulgaris HOM05D004533 ORTHO05D005347 3.9e-17 93.2 228 36.0
Gohir.A12G159800 Gossypium hirsutum HOM05D004533 ORTHO05D005347 3.9e-17 93.2 296 40.5
Nitab4.5_0000027g0050 Nicotiana tabacum HOM05D004533 ORTHO05D005347 5.1e-17 92.8 315 40.3
TWI75G1153 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 6.6e-17 92.4 313 37.1
vmacro01308 Vaccinium macrocarpon HOM05D004533 ORTHO05D005347 8.7e-17 92.0 327 35.8
Hma1.2p1_3075F.1_g332390 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 1.9e-16 90.9 345 31.9
Sc04g0007440 Simmondsia chinensis HOM05D004533 ORTHO05D005347 3.3e-16 90.1 301 37.2
Gohir.D12G163100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 4.3e-16 89.7 301 39.2
Rhsim09G0125000 Rhododendron simsii HOM05D004533 ORTHO05D005347 4.3e-16 89.7 310 36.8
TAR629G1049 Trochodendron aralioides HOM05D004533 ORTHO05D005347 1.6e-15 87.8 346 30.3
Oeu020361.1 Olea europaea HOM05D004533 ORTHO05D005347 2.1e-15 87.4 288 32.6
Sopen05g006810 Solanum pennellii HOM05D004533 ORTHO05D005347 2.8e-15 87.0 230 51.3
ClCG05G023610 Citrullus lanatus HOM05D004533 ORTHO05D005347 4.8e-15 86.3 330 37.0
Phvul.003G039500 Phaseolus vulgaris HOM05D004533 ORTHO05D005347 1.1e-14 85.1 370 35.7
CsaV3_5G033410 Cucumis sativus L. HOM05D004533 ORTHO05D005347 1.8e-14 84.3 325 30.5
MSTRG.13457 Avicennia marina HOM05D004533 ORTHO05D005347 2.4e-14 84.0 337 33.2
Nitab4.5_0006154g0010 Nicotiana tabacum HOM05D004533 ORTHO05D005347 2.4e-14 84.0 308 38.0
ATR0827G049 Amborella trichopoda HOM05D004533 ORTHO05D005347 3.1e-14 83.6 316 41.8
SGA_v2.0_scaffold287G47174 Striga asiatica HOM05D004533 ORTHO05D005347 3.1e-14 83.6 320 40.9
TWI31G0640 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 3.1e-14 83.6 308 35.7
Glyma.02G121400 Glycine max HOM05D004533 ORTHO05D005347 3.4e-13 80.1 377 32.9
Hma1.2p1_0473F.1_g160260 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 5.8e-13 79.3 315 28.9
PSO782G4709 Papaver somniferum HOM05D004533 ORTHO05D005347 5.8e-13 79.3 319 36.4
Sc11g0002570 Simmondsia chinensis HOM05D004533 ORTHO05D005347 7.6e-13 79.0 334 34.4
Sed0009680 Sechium edule HOM05D004533 ORTHO05D005347 1.3e-12 78.2 323 29.1
Glyma.01G063800 Glycine max HOM05D004533 ORTHO05D005347 1.7e-12 77.8 376 30.9
Lj6P776T6 Lonicera japonica HOM05D004533 ORTHO05D005347 2.9e-12 77.0 141 37.6
Actinidia19907 Actinidia chinensis HOM05D004533 ORTHO05D005347 6.4e-12 75.9 314 33.1
DCAR_030051 Daucus carota HOM05D004533 ORTHO05D005347 8.4e-12 75.5 322 36.3
Lsat_1_v5_gn_8_45920 Lactuca sativa HOM05D004533 ORTHO05D005347 1.1e-11 75.1 341 39.0
PGSC0003DMG400028307 Solanum tuberosum HOM05D004533 ORTHO05D005347 1.9e-11 74.3 331 32.9
MELO3C012160.2 Cucumis melo HOM05D004533 ORTHO05D005347 3.2e-11 73.6 326 28.8
HanXRQChr12g0363201 Helianthus annuus HOM05D004533 ORTHO05D005347 3.2e-11 73.6 348 33.3
Oeu048133.1 Olea europaea HOM05D004533 ORTHO05D005347 1.6e-10 71.2 304 32.6
Oeu048134.1 Olea europaea HOM05D004533 ORTHO05D005347 1.6e-10 71.2 304 32.6
PSO063G5982 Papaver somniferum HOM05D004533 ORTHO05D005347 3.5e-10 70.1 319 29.2
DCAR_026684 Daucus carota HOM05D004533 ORTHO05D005347 2.3e-09 67.4 324 26.2
ECA233G1177 Erigeron canadensis HOM05D004533 ORTHO05D005347 6.7e-09 65.9 343 30.9
MSTRG.7732 Avicennia marina HOM05D004533 ORTHO05D005347 8.7e-09 65.5 337 30.0
VMungo1215G1442 Vigna mungo HOM05D004533 ORTHO05D005347 1.1e-08 65.1 148 37.2
ECA234G4159 Erigeron canadensis HOM05D004533 ORTHO05D005347 1.9e-08 64.3 337 29.1
Ah.02g126770 Amaranthus hybridus HOM05D004533 ORTHO05D005347 4.8e-07 59.7 306 27.8
Actinidia13399 Actinidia chinensis HOM05D004533 ORTHO05D005347 6.2e-07 59.3 125 39.2
Actinidia16147 Actinidia chinensis HOM05D004533 ORTHO05D005347 8.1e-07 58.9 222 35.6
Actinidia26533 Actinidia chinensis HOM05D004533 ORTHO05D005347 8.1e-07 58.9 222 35.6
Nn3g17512 Nelumbo nucifera HOM05D004533 ORTHO05D005347 1.1e-06 58.5 335 38.5
DCAR_007202 Daucus carota HOM05D004533 ORTHO05D005347 3.1e-06 57.0 329 31.6
PGR102G1315 Punica granatum HOM05D004533 ORTHO05D005347 3.1e-06 57.0 324 38.9
MBI16_g39936_MAGBIO Magnolia biondii HOM05D004533 ORTHO05D005347 9.0e-06 55.5 319 30.1


User provided reference genes

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