Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G28110 Arabidopsis lyrata HOM05D005042 ORTHO05D006080 4.4e-283 977.6 629 100.0
AT1G69060 Arabidopsis thaliana HOM05D005042 ORTHO05D006080 5.0e-242 841.3 629 82.5
Carub.0002s1568 Capsella rubella HOM05D005042 ORTHO05D006080 1.6e-192 676.8 628 68.8
Thhalv10018302m.g Eutrema salsugineum HOM05D005042 ORTHO05D006080 7.3e-169 598.2 639 64.6
Sp5g24160 Schrenkiella parvula HOM05D005042 ORTHO05D006080 7.6e-166 588.2 619 64.3
C06p40780 Brassica napus HOM05D005042 ORTHO05D006080 1.9e-145 520.4 670 60.6
Aa31LG4G11790 Aethionema arabicum HOM05D005042 ORTHO05D006080 1.7e-141 507.3 633 53.7
BolC6t39355H Brassica oleracea HOM05D005042 ORTHO05D006080 1.1e-140 504.6 662 63.9
A07p35450 Brassica napus HOM05D005042 ORTHO05D006080 1.3e-130 471.1 659 57.4
BraA07t31136Z Brassica rapa HOM05D005042 ORTHO05D006080 2.0e-126 457.2 651 62.2
THA.LOC104821992 Tarenaya hassleriana HOM05D005042 ORTHO05D006080 3.3e-113 413.3 641 48.4
Potri.008G109100 Populus trichocarpa HOM05D005042 ORTHO05D006080 2.4e-50 204.5 653 30.2
Potri.T155180 Populus trichocarpa HOM05D005042 ORTHO05D006080 2.4e-50 204.5 653 30.2
Prupe.1G292900 Prunus persica HOM05D005042 ORTHO05D006080 4.0e-50 203.8 683 33.1
Potri.010G139100 Populus trichocarpa HOM05D005042 ORTHO05D006080 3.2e-47 194.1 720 27.6
Dinv34024 Davidia involucrata HOM05D005042 ORTHO05D006080 5.4e-47 193.4 698 29.8
Cpa.g.sc1.165 Carica papaya HOM05D005042 ORTHO05D006080 1.6e-46 191.8 676 28.7
Thecc.02G323700 Theobroma cacao HOM05D005042 ORTHO05D006080 1.7e-45 188.3 646 33.6
Haze_11871 Corylus avellana HOM05D005042 ORTHO05D006080 1.9e-44 184.9 732 29.5
Actinidia07770 Actinidia chinensis HOM05D005042 ORTHO05D006080 5.6e-44 183.3 685 31.8
Duzib251G0840 Durio zibethinus HOM05D005042 ORTHO05D006080 5.6e-44 183.3 647 33.7
Gorai.009G327100 Gossypium raimondii HOM05D005042 ORTHO05D006080 5.6e-44 183.3 647 35.5
Gohir.D05G307200 Gossypium hirsutum HOM05D005042 ORTHO05D006080 1.2e-43 182.2 653 35.4
Gohir.A05G306900 Gossypium hirsutum HOM05D005042 ORTHO05D006080 3.1e-42 177.6 652 34.4
Atru.chr11.1578 Acer truncatum HOM05D005042 ORTHO05D006080 2.6e-41 174.5 718 33.6
CSS0000751 Camellia sinensis var. sinensis HOM05D005042 ORTHO05D006080 3.4e-41 174.1 696 31.8
Cfa008851 Carpinus fangiana HOM05D005042 ORTHO05D006080 3.4e-41 174.1 734 28.1
TWI31G0262 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 3.4e-41 174.1 674 30.7
TWI79G1206 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 4.4e-41 173.7 671 31.7
Nn4g23527 Nelumbo nucifera HOM05D005042 ORTHO05D006080 1.3e-40 172.2 679 32.1
CARHR061940 Cardamine hirsuta HOM05D005042 ORTHO05D006080 1.7e-40 171.8 165 83.6
Manes.01G025000 Manihot esculenta HOM05D005042 ORTHO05D006080 3.8e-40 170.6 651 27.8
Sabra08G0082800 Salix brachista HOM05D005042 ORTHO05D006080 1.1e-39 169.1 658 31.8
CiPaw.05G122400 Carya illinoinensis HOM05D005042 ORTHO05D006080 1.9e-39 168.3 694 27.2
vmacro01299 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 1.9e-39 168.3 648 29.2
MD13G1056900 Malus domestica HOM05D005042 ORTHO05D006080 2.4e-39 167.9 662 33.1
COL.COLO4_27818 Corchorus olitorius HOM05D005042 ORTHO05D006080 7.1e-39 166.4 658 28.0
CiPaw.06G094600 Carya illinoinensis HOM05D005042 ORTHO05D006080 9.3e-39 166.0 655 28.2
MD16G1056300 Malus domestica HOM05D005042 ORTHO05D006080 1.7e-37 161.8 559 35.4
Ciclev10030834m.g Citrus clementina HOM05D005042 ORTHO05D006080 3.9e-37 160.6 712 32.6
PGR119G2532 Punica granatum HOM05D005042 ORTHO05D006080 3.9e-37 160.6 637 33.1
Rhsim12G0071400 Rhododendron simsii HOM05D005042 ORTHO05D006080 1.1e-36 159.1 625 29.9
RcHm_v2.0_Chr4g0437421 Rosa chinensis HOM05D005042 ORTHO05D006080 7.3e-36 156.4 681 33.0
Eucgr.G02425 Eucalyptus grandis HOM05D005042 ORTHO05D006080 1.8e-34 151.8 629 30.8
Oeu024162.6 Olea europaea HOM05D005042 ORTHO05D006080 4.0e-34 150.6 654 26.1
Lj3A1027T86 Lonicera japonica HOM05D005042 ORTHO05D006080 5.3e-34 150.2 695 27.5
Cc11_g11610 Coffea canephora HOM05D005042 ORTHO05D006080 7.6e-33 146.4 644 28.3
Nitab4.5_0012072g0010 Nicotiana tabacum HOM05D005042 ORTHO05D006080 7.6e-33 146.4 660 29.2
Hund25158 Selenicereus undatus HOM05D005042 ORTHO05D006080 7.6e-33 146.4 632 27.1
TAR371G1247 Trochodendron aralioides HOM05D005042 ORTHO05D006080 8.4e-32 142.9 220 39.5
Glyma.02G122200 Glycine max HOM05D005042 ORTHO05D006080 1.1e-31 142.5 605 31.1
GSVIVG01012257001 Vitis vinifera HOM05D005042 ORTHO05D006080 3.2e-31 141.0 632 35.6
EL10Ac6g14684 Beta vulgaris HOM05D005042 ORTHO05D006080 5.4e-31 140.2 629 27.5
TAR629G0517 Trochodendron aralioides HOM05D005042 ORTHO05D006080 9.3e-31 139.4 736 30.3
Peaxi162Scf00188g01341 Petunia axillaris HOM05D005042 ORTHO05D006080 2.7e-30 137.9 629 30.5
FAN17G2893 Fragaria x ananassa HOM05D005042 ORTHO05D006080 3.5e-30 137.5 664 33.6
TAR726G0003 Trochodendron aralioides HOM05D005042 ORTHO05D006080 3.5e-30 137.5 669 24.5
FAN22G1919 Fragaria x ananassa HOM05D005042 ORTHO05D006080 1.1e-28 132.5 664 31.8
SGA_v2.0_scaffold287G47187 Striga asiatica HOM05D005042 ORTHO05D006080 2.5e-28 131.3 657 25.9
Glyma.01G064400 Glycine max HOM05D005042 ORTHO05D006080 4.3e-28 130.6 534 36.3
Sc04g0007390 Simmondsia chinensis HOM05D005042 ORTHO05D006080 5.6e-28 130.2 625 34.4
Oeu057419.1 Olea europaea HOM05D005042 ORTHO05D006080 7.4e-28 129.8 663 29.0
Rhsim09G0122700 Rhododendron simsii HOM05D005042 ORTHO05D006080 7.4e-28 129.8 743 25.6
Nitab4.5_0000027g0180 Nicotiana tabacum HOM05D005042 ORTHO05D006080 9.6e-28 129.4 673 28.2
CANSAT11G1456 Cannabis sativa HOM05D005042 ORTHO05D006080 2.1e-27 128.3 669 25.0
Lalb_Chr10g0099121 Lupinus albus HOM05D005042 ORTHO05D006080 2.1e-27 128.3 167 59.9
AUR62007879 Chenopodium quinoa HOM05D005042 ORTHO05D006080 2.8e-27 127.9 524 27.9
Aqoxy3G03731 Aquilegia oxysepala HOM05D005042 ORTHO05D006080 3.7e-27 127.5 764 25.7
Lj2g0019338 Lotus japonicus HOM05D005042 ORTHO05D006080 3.7e-27 127.5 165 54.5
Lalb_Chr17g0341431 Lupinus albus HOM05D005042 ORTHO05D006080 6.2e-27 126.7 166 47.6
MBI16_g07040_MAGBIO Magnolia biondii HOM05D005042 ORTHO05D006080 6.2e-27 126.7 534 33.3
AUR62003064 Chenopodium quinoa HOM05D005042 ORTHO05D006080 8.1e-27 126.3 507 27.4
Psat2g093520 Pisum sativum HOM05D005042 ORTHO05D006080 1.4e-26 125.6 163 57.1
FAN07G1705 Fragaria x ananassa HOM05D005042 ORTHO05D006080 1.8e-26 125.2 670 30.7
Phvul.003G038600 Phaseolus vulgaris HOM05D005042 ORTHO05D006080 5.3e-26 123.6 168 44.0
FvH4_4g29350 Fragaria vesca HOM05D005042 ORTHO05D006080 9.0e-26 122.9 641 32.3
PSO782G3512 Papaver somniferum HOM05D005042 ORTHO05D006080 9.0e-26 122.9 621 31.2
CDE10G0431 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 1.2e-25 122.5 157 44.6
CAN.G1021.3 Capsicum annuum HOM05D005042 ORTHO05D006080 1.5e-25 122.1 648 28.7
vmacro10479 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 3.4e-25 120.9 712 24.4
PSO063G2731 Papaver somniferum HOM05D005042 ORTHO05D006080 7.6e-25 119.8 628 30.4
CsaV3_6G033840 Cucumis sativus L. HOM05D005042 ORTHO05D006080 1.3e-24 119.0 239 37.2
PGSC0003DMG400028304 Solanum tuberosum HOM05D005042 ORTHO05D006080 1.3e-24 119.0 632 29.3
Sabra10G0107300 Salix brachista HOM05D005042 ORTHO05D006080 1.7e-24 118.6 648 25.5
Sopen05g006670 Solanum pennellii HOM05D005042 ORTHO05D006080 1.7e-24 118.6 639 28.2
Migut.E00252 Erythranthe guttata HOM05D005042 ORTHO05D006080 4.9e-24 117.1 620 25.3
Solyc05g011930.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 6.4e-24 116.7 635 28.7
ATR0827G068 Amborella trichopoda HOM05D005042 ORTHO05D006080 8.4e-24 116.3 181 43.1
MELO3C011406.2 Cucumis melo HOM05D005042 ORTHO05D006080 8.4e-24 116.3 232 35.8
CARHR061930 Cardamine hirsuta HOM05D005042 ORTHO05D006080 1.1e-23 115.9 117 73.5
HanXRQChr17g0570091 Helianthus annuus HOM05D005042 ORTHO05D006080 1.4e-23 115.5 163 45.4
HPP92_000883 Vanilla planifolia HOM05D005042 ORTHO05D006080 1.9e-23 115.2 157 52.9
arahy.Tifrunner.gnm1.ann1.U4ZHW1 Arachis hypogaea HOM05D005042 ORTHO05D006080 3.2e-23 114.4 313 42.2
COL.COLO4_27836 Corchorus olitorius HOM05D005042 ORTHO05D006080 4.2e-23 114.0 173 43.4
ECA246G3902 Erigeron canadensis HOM05D005042 ORTHO05D006080 1.2e-22 112.5 163 47.2
FAN12G1549 Fragaria x ananassa HOM05D005042 ORTHO05D006080 1.6e-22 112.1 661 31.5
Oeu021807.1 Olea europaea HOM05D005042 ORTHO05D006080 2.1e-22 111.7 625 27.4
Medtr5g047140 Medicago truncatula HOM05D005042 ORTHO05D006080 2.7e-22 111.3 164 50.0
CDE10G0071 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 7.9e-22 109.8 81 65.4
Lsat_1_v5_gn_3_106381 Lactuca sativa HOM05D005042 ORTHO05D006080 1.0e-21 109.4 163 43.6
VMungo1215G3453 Vigna mungo HOM05D005042 ORTHO05D006080 1.3e-21 109.0 81 66.7
arahy.Tifrunner.gnm1.ann1.L0BNS4 Arachis hypogaea HOM05D005042 ORTHO05D006080 2.3e-21 108.2 81 66.7
TPR.G34179 Trifolium pratense HOM05D005042 ORTHO05D006080 3.9e-21 107.5 166 51.2
Dinv15585 Davidia involucrata HOM05D005042 ORTHO05D006080 5.1e-21 107.1 67 77.6
Ah.03g138660 Amaranthus hybridus HOM05D000485 ORTHO05D000341 8.7e-21 106.3 551 30.7
ClCG08G010560 Citrullus lanatus HOM05D005042 ORTHO05D006080 1.1e-20 105.9 202 36.1
PGSC0003DMG400028305 Solanum tuberosum HOM05D005042 ORTHO05D006080 4.3e-20 104.0 79 65.8
Dinv15584 Davidia involucrata HOM05D000485 ORTHO05D000341 5.6e-20 103.6 540 25.2
QL05p008217 Quercus lobata HOM05D005042 ORTHO05D006080 5.6e-20 103.6 298 33.6
Oeu055079.1 Olea europaea HOM05D005042 ORTHO05D006080 7.4e-20 103.2 346 29.5
PSO017G3437 Papaver somniferum HOM05D005042 ORTHO05D006080 6.2e-19 100.1 495 24.2
PSO478G2238 Papaver somniferum HOM05D005042 ORTHO05D006080 1.1e-18 99.4 495 27.7
Solyc05g011950.3 Solanum lycopersicum HOM05D005042 ORTHO05D006080 1.1e-18 99.4 165 40.0
Solyc05g011960.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 2.4e-18 98.2 79 62.0
TPR.G37754 Trifolium pratense HOM05D005042 ORTHO05D006080 3.1e-18 97.8 164 40.9
unitig_62.g23700 Utricularia gibba HOM05D005042 ORTHO05D006080 4.0e-18 97.4 160 41.2
HanXRQChr16g0527171 Helianthus annuus HOM05D005042 ORTHO05D006080 6.9e-18 96.7 165 55.2
Sopen05g006700 Solanum pennellii HOM05D005042 ORTHO05D006080 6.9e-18 96.7 79 60.8
CAN.G1021.20 Capsicum annuum HOM05D005042 ORTHO05D006080 1.2e-17 95.9 79 60.8
Os03g0752700 Oryza sativa ssp. japonica HOM05D005042 ORTHO05D006080 1.5e-17 95.5 180 53.3
CAN.G1021.24 Capsicum annuum HOM05D005042 ORTHO05D006080 3.4e-17 94.4 79 59.5
DCAR_007205 Daucus carota HOM05D005042 ORTHO05D006080 4.5e-17 94.0 189 51.3
Ca_05058_v3 Cicer arietinum L. HOM05D005042 ORTHO05D006080 5.8e-17 93.6 172 38.4
CAN.G1021.18 Capsicum annuum HOM05D005042 ORTHO05D006080 2.2e-16 91.7 79 59.5
CAN.G1021.19 Capsicum annuum HOM05D005042 ORTHO05D006080 3.8e-16 90.9 79 59.5
Mapoly0211s0012 Marchantia polymorpha HOM05D005042 ORTHO05D006080 3.8e-16 90.9 227 39.6
SEGI_37091 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 2.5e-15 88.2 156 42.3
CAN.G1021.10 Capsicum annuum HOM05D005042 ORTHO05D006080 3.2e-15 87.8 158 39.2
ECA234G0547 Erigeron canadensis HOM05D005042 ORTHO05D006080 3.2e-15 87.8 270 37.4
DCAR_023741 Daucus carota HOM05D005042 ORTHO05D006080 4.2e-15 87.4 79 60.8
Pp3c1_680 Physcomitrium patens HOM05D005042 ORTHO05D006080 9.3e-15 86.3 241 30.3
Zm00001eb057530 Zea mays HOM05D005042 ORTHO05D006080 1.2e-14 85.9 161 49.7
Lsat_1_v5_gn_4_25561 Lactuca sativa HOM05D005042 ORTHO05D006080 3.5e-14 84.3 79 57.0
SEGI_40784 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 4.6e-14 84.0 532 24.8
AagrBONN_evm.TU.Sc2ySwM_117.2775 Anthoceros agrestis HOM05D005042 ORTHO05D006080 5.1e-13 80.5 166 33.7
DCAR_030054 Daucus carota HOM05D005042 ORTHO05D006080 1.1e-12 79.3 333 32.4
Pp3c2_29040 Physcomitrium patens HOM05D005042 ORTHO05D006080 1.5e-12 79.0 287 31.4
Sopen05g006680 Solanum pennellii HOM05D000061 ORTHO05D000050 1.5e-12 79.0 153 36.6
TAR371G1032 Trochodendron aralioides HOM05D005042 ORTHO05D006080 2.5e-12 78.2 180 32.8
CBR_g19648 Chara braunii HOM05D005042 ORTHO05D006080 4.3e-12 77.4 74 55.4
TPR.G38503 Trifolium pratense HOM05D005042 ORTHO05D006080 9.7e-12 76.3 138 38.4
Nn3g17525 Nelumbo nucifera HOM05D005042 ORTHO05D006080 2.7e-06 58.2 207 27.5


User provided reference genes

Program Settings