Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G27750 Arabidopsis lyrata HOM05D005816 ORTHO05D006915 1.1e-60 236.5 122 100.0
Thhalv10019343m.g Eutrema salsugineum HOM05D005816 ORTHO05D006915 8.3e-45 183.7 113 84.1
AT1G68795 Arabidopsis thaliana HOM05D005816 ORTHO05D006915 3.5e-43 178.3 122 81.1
CARHR061620 Cardamine hirsuta HOM05D005816 ORTHO05D006915 6.0e-43 177.6 113 81.4
BcaC08g46328 Brassica carinata HOM05D005816 ORTHO05D006915 5.8e-38 161.0 114 77.2
BolC6t39316H Brassica oleracea HOM05D005816 ORTHO05D006915 5.8e-38 161.0 114 77.2
Carub.0002s1536 Capsella rubella HOM05D005816 ORTHO05D006915 2.2e-37 159.1 127 74.8
BcaB05g24412 Brassica carinata HOM05D005816 ORTHO05D006915 1.9e-36 156.0 115 75.7
BcaB03g15849 Brassica carinata HOM05D005816 ORTHO05D006915 2.8e-32 142.1 114 70.2
BcaC03g14990 Brassica carinata HOM05D005816 ORTHO05D006915 7.6e-30 134.0 115 69.6
Sp5g23900 Schrenkiella parvula HOM05D005816 ORTHO05D006915 5.4e-28 127.9 115 66.1
Aa31sc79G90 Aethionema arabicum HOM05D005816 ORTHO05D006915 5.3e-23 111.3 114 58.8
TPR.G9813 Trifolium pratense HOM05D005816 ORTHO05D006915 8.7e-18 94.0 119 48.7
QL01p001040 Quercus lobata HOM05D005816 ORTHO05D006915 1.9e-17 92.8 122 47.5
Nn3g17700 Nelumbo nucifera HOM05D005816 ORTHO05D006915 4.3e-17 91.7 122 47.5
Lalb_Chr21g0313371 Lupinus albus HOM05D005816 ORTHO05D006915 1.3e-16 90.1 119 49.6
PGR119G1376 Punica granatum HOM05D005816 ORTHO05D006915 3.1e-15 85.5 120 48.3
THA.LOC104821965 Tarenaya hassleriana HOM05D005816 ORTHO05D006915 3.1e-15 85.5 126 52.4
Ciclev10033717m.g Citrus clementina HOM05D005816 ORTHO05D006915 6.9e-15 84.3 127 46.5
Medtr1g093800 Medicago truncatula HOM05D005816 ORTHO05D006915 6.9e-15 84.3 114 48.2
CSS0007623 Camellia sinensis var. sinensis HOM05D005816 ORTHO05D006915 9.0e-15 84.0 114 50.9
CiPaw.16G002600 Carya illinoinensis HOM05D005816 ORTHO05D006915 1.2e-14 83.6 117 47.9
Manes.06G073000 Manihot esculenta HOM05D005816 ORTHO05D006915 4.5e-14 81.6 126 43.7
Lalb_Chr10g0099661 Lupinus albus HOM05D005816 ORTHO05D006915 7.6e-14 80.9 115 44.3
VMungo0720G2795 Vigna mungo HOM05D005816 ORTHO05D006915 7.6e-14 80.9 117 49.6
Thecc.02G362100 Theobroma cacao HOM05D005816 ORTHO05D006915 9.9e-14 80.5 119 47.9
Lsat_1_v5_gn_4_19200 Lactuca sativa HOM05D005816 ORTHO05D006915 1.7e-13 79.7 113 46.9
CiPaw.15G002700 Carya illinoinensis HOM05D005816 ORTHO05D006915 2.2e-13 79.3 128 42.2
FAN17G1568 Fragaria x ananassa HOM05D005816 ORTHO05D006915 2.2e-13 79.3 115 42.6
Manes.14G096700 Manihot esculenta HOM05D005816 ORTHO05D006915 2.2e-13 79.3 117 46.2
MELO3C005357.2 Cucumis melo HOM05D005816 ORTHO05D006915 2.9e-13 79.0 121 45.5
Duzib251G0462 Durio zibethinus HOM05D005816 ORTHO05D006915 3.8e-13 78.6 117 46.2
Phvul.007G101800 Phaseolus vulgaris HOM05D005816 ORTHO05D006915 3.8e-13 78.6 119 46.2
Prupe.1G304500 Prunus persica HOM05D005816 ORTHO05D006915 3.8e-13 78.6 134 43.3
Atru.chr11.1371 Acer truncatum HOM05D005816 ORTHO05D006915 1.1e-12 77.0 137 40.9
COL.COLO4_07860 Corchorus olitorius HOM05D005816 ORTHO05D006915 1.1e-12 77.0 123 44.7
TAR629G1032 Trochodendron aralioides HOM05D005816 ORTHO05D006915 1.4e-12 76.6 113 47.8
FvH4_4g28190 Fragaria vesca HOM05D005816 ORTHO05D006915 2.4e-12 75.9 115 42.6
FAN12G1213 Fragaria x ananassa HOM05D005816 ORTHO05D006915 2.4e-12 75.9 115 42.6
HanXRQChr05g0149681 Helianthus annuus HOM05D005816 ORTHO05D006915 2.4e-12 75.9 111 40.5
HanXRQChr16g0528861 Helianthus annuus HOM05D005816 ORTHO05D006915 2.4e-12 75.9 113 44.2
Glyma.10G205100 Glycine max HOM05D005816 ORTHO05D006915 3.2e-12 75.5 121 45.5
Sed0000064 Sechium edule HOM05D005816 ORTHO05D006915 3.2e-12 75.5 115 47.0
Glyma.20G185400 Glycine max HOM05D005816 ORTHO05D006915 4.2e-12 75.1 118 42.4
FAN07G2890 Fragaria x ananassa HOM05D005816 ORTHO05D006915 5.4e-12 74.7 115 41.7
Hma1.2p1_0862F.1_g229870 Hydrangea macrophylla HOM05D005816 ORTHO05D006915 5.4e-12 74.7 114 47.4
SalBow8G0077 Salvia bowleyana HOM05D005816 ORTHO05D006915 1.6e-11 73.2 113 45.1
Duzib248G0754 Durio zibethinus HOM05D005816 ORTHO05D006915 2.7e-11 72.4 118 44.1
Potri.010G130400 Populus trichocarpa HOM05D005816 ORTHO05D006915 2.7e-11 72.4 114 43.9
Sabra08G0087500 Salix brachista HOM05D005816 ORTHO05D006915 4.6e-11 71.6 120 45.8
Gohir.D13G069300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.0e-10 70.5 124 41.9
Oeu041876.1 Olea europaea HOM05D005816 ORTHO05D006915 1.0e-10 70.5 115 42.6
Thecc.03G027700 Theobroma cacao HOM05D005816 ORTHO05D006915 1.3e-10 70.1 117 45.3
Gohir.A13G071300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.8e-10 69.7 124 40.3
Gorai.013G079400 Gossypium raimondii HOM05D005816 ORTHO05D006915 1.8e-10 69.7 124 41.1
ClCG01G005730 Citrullus lanatus HOM05D005816 ORTHO05D006915 2.3e-10 69.3 112 43.8
Migut.E00293 Erythranthe guttata HOM05D005816 ORTHO05D006915 2.3e-10 69.3 78 48.7
Aqoxy3G00384 Aquilegia oxysepala HOM05D005816 ORTHO05D006915 3.0e-10 68.9 114 41.2
Gohir.A07G038800 Gossypium hirsutum HOM05D005816 ORTHO05D006915 5.1e-10 68.2 116 44.8
Cc11_g10680 Coffea canephora HOM05D005816 ORTHO05D006915 8.7e-10 67.4 110 41.8
Lj5g0018872 Lotus japonicus HOM05D005816 ORTHO05D006915 8.7e-10 67.4 104 45.2
Migut.L01100 Erythranthe guttata HOM05D005816 ORTHO05D006915 1.9e-09 66.2 115 44.3
Gorai.001G045900 Gossypium raimondii HOM05D005816 ORTHO05D006915 1.9e-09 66.2 124 42.7
A07p39820 Brassica napus HOM05D005816 ORTHO05D006915 3.3e-09 65.5 110 44.5
BraA07t31528Z Brassica rapa HOM05D005816 ORTHO05D006915 3.3e-09 65.5 110 44.5
Prupe.5G216700 Prunus persica HOM05D005816 ORTHO05D006915 3.3e-09 65.5 121 43.8
Gohir.D07G042900 Gossypium hirsutum HOM05D005816 ORTHO05D006915 5.6e-09 64.7 119 44.5
BolC6t39843H Brassica oleracea HOM05D005816 ORTHO05D006915 7.4e-09 64.3 101 47.5
Lsat_1_v5_gn_3_58221 Lactuca sativa HOM05D005816 ORTHO05D006915 7.4e-09 64.3 116 40.5
Potri.008G115600 Populus trichocarpa HOM05D005816 ORTHO05D006915 7.4e-09 64.3 121 43.8
RcHm_v2.0_Chr4g0435951 Rosa chinensis HOM05D005816 ORTHO05D006915 7.4e-09 64.3 119 40.3
Lsat_1_v5_gn_4_112260 Lactuca sativa HOM05D005816 ORTHO05D006915 1.6e-08 63.2 77 50.6
C06p48080 Brassica napus HOM05D005816 ORTHO05D006915 2.1e-08 62.8 110 44.5
Dinv36900 Davidia involucrata HOM05D005816 ORTHO05D006915 2.1e-08 62.8 71 53.5
TPR.G26768 Trifolium pratense HOM05D005816 ORTHO05D006915 2.1e-08 62.8 127 35.4
BcaC08g46825 Brassica carinata HOM05D005816 ORTHO05D006915 3.7e-08 62.0 101 44.6
Nn4g23710 Nelumbo nucifera HOM05D005816 ORTHO05D006915 4.8e-08 61.6 131 41.2
Duzib205G0672 Durio zibethinus HOM05D005816 ORTHO05D006915 6.2e-08 61.2 121 43.0
Manes.05G118800 Manihot esculenta HOM05D005816 ORTHO05D006915 6.2e-08 61.2 115 41.7
Aa31LG4G4260 Aethionema arabicum HOM05D005816 ORTHO05D006915 8.1e-08 60.8 54 63.0
Eucgr.G02356 Eucalyptus grandis HOM05D005816 ORTHO05D006915 8.1e-08 60.8 125 40.0
Gohir.D02G116175 Gossypium hirsutum HOM05D005816 ORTHO05D006915 8.1e-08 60.8 103 39.8
COL.COLO4_22708 Corchorus olitorius HOM05D005816 ORTHO05D006915 1.4e-07 60.1 120 40.8
HanXRQChr16g0502081 Helianthus annuus HOM05D005816 ORTHO05D006915 1.4e-07 60.1 70 54.3
Atru.chr9.746 Acer truncatum HOM05D005816 ORTHO05D006915 2.4e-07 59.3 60 56.7
Medtr8g076990 Medicago truncatula HOM05D005816 ORTHO05D006915 2.4e-07 59.3 70 51.4
Oeu044626.1 Olea europaea HOM05D005816 ORTHO05D006915 2.4e-07 59.3 121 42.1
Aqoxy3G03898 Aquilegia oxysepala HOM05D005816 ORTHO05D006915 3.1e-07 58.9 121 38.8
AT1G73965 Arabidopsis thaliana HOM05D005816 ORTHO05D006915 3.1e-07 58.9 111 42.3
Sp5g29165 Schrenkiella parvula HOM05D005816 ORTHO05D006915 3.1e-07 58.9 110 39.1
MD06G1210600 Malus domestica HOM05D005816 ORTHO05D006915 4.0e-07 58.5 123 40.7
Sopen03g038660 Solanum pennellii HOM05D005816 ORTHO05D006915 4.0e-07 58.5 56 57.1
PGSC0003DMG400005703 Solanum tuberosum HOM05D005816 ORTHO05D006915 5.3e-07 58.2 56 57.1
Carub.0002s2074 Capsella rubella HOM05D005816 ORTHO05D006915 9.0e-07 57.4 110 40.9
CARHR067080 Cardamine hirsuta HOM05D005816 ORTHO05D006915 1.2e-06 57.0 112 44.6
MBI16_g06255_MAGBIO Magnolia biondii HOM05D005816 ORTHO05D006915 1.2e-06 57.0 113 38.1
Oeu024099.1 Olea europaea HOM05D005816 ORTHO05D006915 1.2e-06 57.0 117 39.3
AL2G33800 Arabidopsis lyrata HOM05D005816 ORTHO05D006915 1.5e-06 56.6 111 45.0
Gorai.007G007600 Gossypium raimondii HOM05D005816 ORTHO05D006915 1.5e-06 56.6 67 53.7
Lj4g0025770 Lotus japonicus HOM05D005816 ORTHO05D006915 1.5e-06 56.6 53 54.7
PGR044G2006 Punica granatum HOM05D005816 ORTHO05D006915 1.5e-06 56.6 117 38.5
FvH4_5g12751 Fragaria vesca HOM05D005816 ORTHO05D006915 2.0e-06 56.2 119 37.8
Gohir.A03G097050 Gossypium hirsutum HOM05D005816 ORTHO05D006915 2.0e-06 56.2 104 39.4
MD14G1221300 Malus domestica HOM05D005816 ORTHO05D006915 2.0e-06 56.2 120 43.3
Cpa.g.sc13.61 Carica papaya HOM05D005816 ORTHO05D006915 2.6e-06 55.8 60 55.0
Thhalv10019753m.g Eutrema salsugineum HOM05D005816 ORTHO05D006915 2.6e-06 55.8 110 39.1
Lalb_Chr07g0178581 Lupinus albus HOM05D005816 ORTHO05D006915 7.6e-06 54.3 126 34.9
Solyc05g009915.1 Solanum lycopersicum HOM05D005816 ORTHO05D006915 7.6e-06 54.3 121 37.2
FAN18G0325 Fragaria x ananassa HOM05D005816 ORTHO05D006915 1.0e-05 53.9 118 37.3
Sc11g0003040 Simmondsia chinensis HOM05D005816 ORTHO05D006915 1.0e-05 53.9 129 39.5


User provided reference genes

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