Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G27690 Arabidopsis lyrata HOM05D004290 ORTHO05D005025 1.0e-81 306.6 148 100.0
AT1G68760 Arabidopsis thaliana HOM05D004290 ORTHO05D005025 7.7e-77 290.4 148 93.9
Carub.0002s1532 Capsella rubella HOM05D004290 ORTHO05D005025 1.4e-73 279.6 145 91.7
CARHR061580 Cardamine hirsuta HOM05D004290 ORTHO05D005025 1.1e-67 260.0 142 86.6
BraA02t06593Z Brassica rapa HOM05D004290 ORTHO05D005025 5.7e-64 247.7 139 83.5
BcaB05g24409 Brassica carinata HOM05D004290 ORTHO05D005025 9.7e-64 246.9 138 82.6
C02p25170 Brassica napus HOM05D004290 ORTHO05D005025 2.2e-63 245.7 139 82.7
Sp5g23870 Schrenkiella parvula HOM05D004290 ORTHO05D005025 2.2e-63 245.7 142 79.6
A02p15320 Brassica napus HOM05D004290 ORTHO05D005025 3.7e-63 245.0 139 82.7
Aa31sc79G10 Aethionema arabicum HOM05D004290 ORTHO05D005025 8.2e-63 243.8 141 78.7
C04p37630 Brassica napus HOM05D004290 ORTHO05D005025 1.1e-62 243.4 139 82.7
BolC2t08596H Brassica oleracea HOM05D004290 ORTHO05D005025 1.8e-62 242.7 139 82.0
Thhalv10019297m.g Eutrema salsugineum HOM05D004290 ORTHO05D005025 1.2e-61 240.0 143 79.7
BcaC03g14984 Brassica carinata HOM05D004290 ORTHO05D005025 1.2e-58 229.9 138 79.0
Thecc.02G363400 Theobroma cacao HOM05D004290 ORTHO05D005025 5.7e-56 221.1 141 70.2
Ciclev10033020m.g Citrus clementina HOM05D004290 ORTHO05D005025 2.8e-55 218.8 134 73.1
CiPaw.05G172800 Carya illinoinensis HOM05D004290 ORTHO05D005025 1.4e-54 216.5 141 68.1
Eucgr.B03066 Eucalyptus grandis HOM05D004290 ORTHO05D005025 1.8e-54 216.1 135 73.3
QL03p037189 Quercus lobata HOM05D004290 ORTHO05D005025 1.8e-54 216.1 139 69.8
Haze_11793 Corylus avellana HOM05D004290 ORTHO05D005025 2.4e-54 215.7 150 66.0
Duzib251G0274 Durio zibethinus HOM05D004290 ORTHO05D005025 4.1e-54 214.9 134 72.4
Prupe.1G302800 Prunus persica HOM05D004290 ORTHO05D005025 4.1e-54 214.9 148 68.2
Manes.06G074500 Manihot esculenta HOM05D004290 ORTHO05D005025 5.3e-54 214.5 138 69.6
CiPaw.05G172700 Carya illinoinensis HOM05D004290 ORTHO05D005025 7.0e-54 214.2 141 68.1
Hund05546 Selenicereus undatus HOM05D004290 ORTHO05D005025 7.0e-54 214.2 134 71.6
Sabra08G0086600 Salix brachista HOM05D004290 ORTHO05D005025 1.6e-53 213.0 140 70.0
Nn4g23673 Nelumbo nucifera HOM05D004290 ORTHO05D005025 2.7e-53 212.2 135 71.1
CANSAT64G1327 Cannabis sativa HOM05D004290 ORTHO05D005025 5.9e-53 211.1 133 70.7
MD13G1049100 Malus domestica HOM05D004290 ORTHO05D005025 7.7e-53 210.7 137 71.5
Potri.008G114300 Populus trichocarpa HOM05D004290 ORTHO05D005025 1.3e-52 209.9 140 70.0
RcHm_v2.0_Chr4g0436191 Rosa chinensis HOM05D004290 ORTHO05D005025 1.7e-52 209.5 135 67.4
MELO3C005349.2 Cucumis melo HOM05D004290 ORTHO05D005025 2.2e-52 209.1 142 69.0
EL10Ac6g14527 Beta vulgaris HOM05D004290 ORTHO05D005025 3.8e-52 208.4 135 66.7
FvH4_4g28340 Fragaria vesca HOM05D004290 ORTHO05D005025 3.8e-52 208.4 141 64.5
COL.COLO4_07852 Corchorus olitorius HOM05D004290 ORTHO05D005025 6.5e-52 207.6 131 70.2
Cfa008781 Carpinus fangiana HOM05D004290 ORTHO05D005025 8.5e-52 207.2 150 62.7
FAN12G2228 Fragaria x ananassa HOM05D004290 ORTHO05D005025 8.5e-52 207.2 141 63.8
FAN22G0640 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.1e-51 206.8 141 63.8
TWI31G0716 Tripterygium wilfordii HOM05D004290 ORTHO05D005025 1.9e-51 206.1 142 66.9
CsaV3_5G028890 Cucumis sativus L. HOM05D004290 ORTHO05D005025 2.5e-51 205.7 138 68.8
Ah.02g127350 Amaranthus hybridus HOM05D004290 ORTHO05D005025 3.2e-51 205.3 132 69.7
FAN17G1675 Fragaria x ananassa HOM05D004290 ORTHO05D005025 3.2e-51 205.3 141 63.8
Sed0004732 Sechium edule HOM05D004290 ORTHO05D005025 5.5e-51 204.5 143 65.0
Aqoxy3G03864 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 2.7e-50 202.2 139 66.2
Lj3A1022T62 Lonicera japonica HOM05D004290 ORTHO05D005025 2.7e-50 202.2 135 68.9
MD13G1048900 Malus domestica HOM05D004290 ORTHO05D005025 3.6e-50 201.8 136 67.6
Gohir.A13G071200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 8.0e-50 200.7 141 64.5
AUR62007751 Chenopodium quinoa HOM05D004290 ORTHO05D005025 1.0e-49 200.3 138 66.7
arahy.Tifrunner.gnm1.ann1.IBNT6Z Arachis hypogaea HOM05D004290 ORTHO05D005025 1.4e-49 199.9 137 67.9
arahy.Tifrunner.gnm1.ann1.U655LF Arachis hypogaea HOM05D004290 ORTHO05D005025 1.4e-49 199.9 137 67.9
Potri.008G114400 Populus trichocarpa HOM05D004290 ORTHO05D005025 1.4e-49 199.9 138 63.0
PGR102G2310 Punica granatum HOM05D004290 ORTHO05D005025 1.8e-49 199.5 137 67.2
QL03p036461 Quercus lobata HOM05D004290 ORTHO05D005025 2.3e-49 199.1 141 63.1
THA.LOC104821971 Tarenaya hassleriana HOM05D004290 ORTHO05D005025 2.3e-49 199.1 137 66.4
Gohir.D13G069200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 3.0e-49 198.7 141 64.5
Gorai.013G079300 Gossypium raimondii HOM05D004290 ORTHO05D005025 3.0e-49 198.7 141 64.5
Migut.L01112 Erythranthe guttata HOM05D004290 ORTHO05D005025 4.0e-49 198.4 134 68.7
Lj2g0025619 Lotus japonicus HOM05D004290 ORTHO05D005025 6.8e-49 197.6 140 67.1
SalBow8G1203 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.2e-48 196.8 142 64.1
SalBow8G5193 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.2e-48 196.8 142 64.1
MSTRG.7697 Avicennia marina HOM05D004290 ORTHO05D005025 1.5e-48 196.4 134 67.2
ClCG01G005800 Citrullus lanatus HOM05D004290 ORTHO05D005025 2.0e-48 196.1 177 55.9
MBI10_g35795_MAGBIO Magnolia biondii HOM05D004290 ORTHO05D005025 2.0e-48 196.1 143 64.3
Psat2g074600 Pisum sativum HOM05D004290 ORTHO05D005025 2.0e-48 196.1 137 67.9
RcHm_v2.0_Chr4g0436181 Rosa chinensis HOM05D004290 ORTHO05D005025 2.0e-48 196.1 134 67.9
AUR62002942 Chenopodium quinoa HOM05D004290 ORTHO05D005025 3.4e-48 195.3 138 65.2
RcHm_v2.0_Chr2g0142071 Rosa chinensis HOM05D004290 ORTHO05D005025 5.7e-48 194.5 133 66.2
RcHm_v2.0_Chr2g0142081 Rosa chinensis HOM05D004290 ORTHO05D005025 5.7e-48 194.5 133 66.2
RcHm_v2.0_Chr2g0142111 Rosa chinensis HOM05D004290 ORTHO05D005025 5.7e-48 194.5 133 66.2
RcHm_v2.0_Chr6g0244161 Rosa chinensis HOM05D004290 ORTHO05D005025 7.5e-48 194.1 135 66.7
Cc11_g10800 Coffea canephora HOM05D004290 ORTHO05D005025 9.8e-48 193.7 135 66.7
Glyma.01G090900 Glycine max HOM05D004290 ORTHO05D005025 9.8e-48 193.7 139 66.2
Sc04g0006830 Simmondsia chinensis HOM05D004290 ORTHO05D005025 9.8e-48 193.7 134 66.4
Aqoxy3G03865 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 1.3e-47 193.4 141 61.0
GSVIVG01011978001 Vitis vinifera HOM05D004290 ORTHO05D005025 1.3e-47 193.4 135 67.4
FvH4_4g28310 Fragaria vesca HOM05D004290 ORTHO05D005025 1.7e-47 193.0 132 65.2
FAN12G0523 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.7e-47 193.0 132 65.2
RcHm_v2.0_Chr2g0142121 Rosa chinensis HOM05D004290 ORTHO05D005025 1.7e-47 193.0 133 65.4
HanXRQChr08g0214461 Helianthus annuus HOM05D004290 ORTHO05D005025 2.2e-47 192.6 134 64.9
ATR1147G043 Amborella trichopoda HOM05D004290 ORTHO05D005025 6.3e-47 191.0 142 59.2
Prupe.1G303000 Prunus persica HOM05D004290 ORTHO05D005025 6.3e-47 191.0 140 62.1
FvH4_6g24180 Fragaria vesca HOM05D004290 ORTHO05D005025 8.3e-47 190.7 138 62.3
FAN14G4265 Fragaria x ananassa HOM05D004290 ORTHO05D005025 8.3e-47 190.7 138 62.3
ClCG00G001430 Citrullus lanatus HOM05D004290 ORTHO05D005025 1.1e-46 190.3 134 64.9
ClCG05G023160 Citrullus lanatus HOM05D004290 ORTHO05D005025 1.1e-46 190.3 134 64.9
Prupe.1G302900 Prunus persica HOM05D004290 ORTHO05D005025 1.4e-46 189.9 141 63.8
MD16G1050200 Malus domestica HOM05D004290 ORTHO05D005025 1.8e-46 189.5 136 66.2
Cc11_g10790 Coffea canephora HOM05D004290 ORTHO05D005025 2.4e-46 189.1 135 65.2
Nitab4.5_0013408g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 3.1e-46 188.7 135 65.2
FAN09G0247 Fragaria x ananassa HOM05D004290 ORTHO05D005025 5.4e-46 188.0 138 61.6
Ca_19617_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 7.0e-46 187.6 137 66.4
Ca_30768_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 7.0e-46 187.6 137 66.4
Medtr5g062660 Medicago truncatula HOM05D004290 ORTHO05D005025 7.0e-46 187.6 138 66.7
PSO478G2631 Papaver somniferum HOM05D004290 ORTHO05D005025 7.0e-46 187.6 136 64.0
Sed0009817 Sechium edule HOM05D004290 ORTHO05D005025 1.2e-45 186.8 147 57.8
MELO3C012202.2 Cucumis melo HOM05D004290 ORTHO05D005025 1.6e-45 186.4 134 62.7
CsaV3_5G033840 Cucumis sativus L. HOM05D004290 ORTHO05D005025 1.6e-45 186.4 134 62.7
Dinv16527 Davidia involucrata HOM05D004290 ORTHO05D005025 1.6e-45 186.4 127 66.1
Nitab4.5_0001178g0080 Nicotiana tabacum HOM05D004290 ORTHO05D005025 1.6e-45 186.4 135 64.4
FAN09G2488 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.0e-45 186.0 139 62.6
FAN07G1902 Fragaria x ananassa HOM05D004290 ORTHO05D005025 4.5e-45 184.9 135 64.4
TPR.G33571 Trifolium pratense HOM05D004290 ORTHO05D005025 4.5e-45 184.9 140 66.4
DCAR_026707 Daucus carota HOM05D004290 ORTHO05D005025 7.7e-45 184.1 134 64.9
FAN12G2396 Fragaria x ananassa HOM05D004290 ORTHO05D005025 7.7e-45 184.1 135 63.7
MD16G1050100 Malus domestica HOM05D004290 ORTHO05D005025 7.7e-45 184.1 140 59.3
Phvul.003G024900 Phaseolus vulgaris HOM05D004290 ORTHO05D005025 7.7e-45 184.1 129 65.1
Dinv05808 Davidia involucrata HOM05D000436 ORTHO05D005025 1.0e-44 183.7 125 66.4
FvH4_4g28300 Fragaria vesca HOM05D004290 ORTHO05D005025 6.5e-44 181.0 135 63.0
Solyc05g010015.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 1.1e-43 180.3 135 63.0
HPP92_021836 Vanilla planifolia HOM05D004290 ORTHO05D005025 1.1e-43 180.3 139 61.2
SGA_v2.0_scaffold14G06802 Striga asiatica HOM05D004290 ORTHO05D005025 2.5e-43 179.1 141 58.2
Sopen05g005830 Solanum pennellii HOM05D004290 ORTHO05D005025 5.5e-43 177.9 135 62.2
Lsat_1_v5_gn_8_37520 Lactuca sativa HOM05D004290 ORTHO05D005025 9.5e-43 177.2 132 62.9
ECA233G1907 Erigeron canadensis HOM05D004290 ORTHO05D005025 1.6e-42 176.4 134 61.9
RcHm_v2.0_Chr4g0436151 Rosa chinensis HOM05D004290 ORTHO05D005025 1.6e-42 176.4 140 60.7
ClCG05G023170 Citrullus lanatus HOM05D004290 ORTHO05D005025 2.1e-42 176.0 126 61.9
SGA_v2.0_scaffold14G06801 Striga asiatica HOM05D004290 ORTHO05D005025 2.8e-42 175.6 141 56.7
Lalb_Chr04g0255051 Lupinus albus HOM05D004290 ORTHO05D005025 4.7e-42 174.9 137 62.0
Peaxi162Scf00118g01310 Petunia axillaris HOM05D004290 ORTHO05D005025 4.7e-42 174.9 140 56.4
DCAR_023699 Daucus carota HOM05D004290 ORTHO05D005025 1.4e-41 173.3 134 58.2
SalBow8G3034 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.4e-41 173.3 137 59.9
DCAR_017507 Daucus carota HOM05D004290 ORTHO05D005025 4.0e-41 171.8 135 57.0
DCAR_026708 Daucus carota HOM05D004290 ORTHO05D005025 4.0e-41 171.8 135 57.0
Solyc03g043860.2 Solanum lycopersicum HOM05D004290 ORTHO05D005025 8.9e-41 170.6 142 55.6
PGSC0003DMG400030259 Solanum tuberosum HOM05D004290 ORTHO05D005025 1.2e-40 170.2 142 56.3
CDE10G0275 Ceratophyllum demersum HOM05D004290 ORTHO05D005025 1.5e-40 169.9 136 61.0
ECA234G2024 Erigeron canadensis HOM05D004290 ORTHO05D005025 2.6e-40 169.1 135 60.7
Pp3c20_17780 Physcomitrium patens HOM05D004290 ORTHO05D005025 5.7e-40 167.9 134 55.2
HanXRQChr16g0528791 Helianthus annuus HOM05D004290 ORTHO05D005025 9.8e-40 167.2 135 61.5
SalBow8G2020 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.3e-39 166.8 139 58.3
Prupe.1G303100 Prunus persica HOM05D004290 ORTHO05D005025 1.7e-39 166.4 139 60.4
HanXRQChr16g0528801 Helianthus annuus HOM05D004290 ORTHO05D005025 6.3e-39 164.5 135 59.3
AagrBONN_evm.TU.Sc2ySwM_344.2294 Anthoceros agrestis HOM05D004290 ORTHO05D005025 2.4e-38 162.5 136 52.9
Prupe.1G300800 Prunus persica HOM05D004290 ORTHO05D005025 2.4e-38 162.5 143 59.4
Mapoly0059s0094 Marchantia polymorpha HOM05D004290 ORTHO05D005025 9.2e-38 160.6 140 50.7
unitig_744.g24286 Utricularia gibba HOM05D004290 ORTHO05D005025 9.2e-38 160.6 132 56.8
CSS0026618 Camellia sinensis var. sinensis HOM05D004290 ORTHO05D005025 1.2e-37 160.2 141 56.0
FAN22G2200 Fragaria x ananassa HOM05D004290 ORTHO05D005025 3.5e-37 158.7 199 44.2
Lsat_1_v5_gn_4_17281 Lactuca sativa HOM05D004290 ORTHO05D005025 3.5e-37 158.7 135 58.5
Actinidia14836 Actinidia chinensis HOM05D000436 ORTHO05D000678 5.6e-35 151.4 112 67.0
QL03p036408 Quercus lobata HOM05D004290 ORTHO05D005025 5.6e-35 151.4 99 66.7
Oeu044394.1 Olea europaea HOM05D004290 ORTHO05D005025 7.3e-35 151.0 133 56.4
Sopen03g007670 Solanum pennellii HOM05D004290 ORTHO05D005025 2.1e-34 149.4 142 52.1
Peaxi162Scf00367g00519 Petunia axillaris HOM05D004290 ORTHO05D005025 3.6e-34 148.7 135 55.6
CAN.G184.70 Capsicum annuum HOM05D004290 ORTHO05D005025 1.4e-33 146.7 113 61.9
CBR_g26184 Chara braunii HOM05D004290 ORTHO05D005025 9.8e-32 140.6 132 49.2
FAN12G1909 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.2e-31 139.4 135 53.3
Cre03.g184400 Chlamydomonas reinhardtii HOM05D004290 ORTHO05D005025 4.1e-30 135.2 134 50.0
ATR1147G035 Amborella trichopoda HOM05D004290 ORTHO05D005025 7.0e-30 134.4 150 45.3
MSTRG.13496 Avicennia marina HOM05D004290 ORTHO05D005025 7.8e-29 131.0 133 49.6
FvH4_4g28280 Fragaria vesca HOM05D004290 ORTHO05D005025 5.0e-28 128.3 135 48.1
FAN09G1140 Fragaria x ananassa HOM05D005343 ORTHO05D007153 8.6e-28 127.5 95 58.9
Peaxi162Scf00367g00520 Petunia axillaris HOM05D004290 ORTHO05D005025 7.5e-24 114.4 131 48.1
PRCOL_00005217 Prasinoderma coloniale HOM05D004290 ORTHO05D005025 5.4e-22 108.2 131 44.3
Solyc03g150121.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 3.9e-20 102.1 104 48.1
MCO10G139 Micromonas commoda HOM05D004290 ORTHO05D005025 3.1e-17 92.4 126 39.7
Rhsim09G0114000 Rhododendron simsii HOM05D000436 ORTHO05D000678 4.0e-17 92.0 75 61.3
Nitab4.5_0005210g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 1.5e-16 90.1 118 40.7
FAN02G2314 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.0e-16 89.7 69 63.8
RcHm_v2.0_Chr2g0142061 Rosa chinensis HOM05D004290 ORTHO05D005025 3.4e-16 89.0 63 68.3
Aqoxy3G02627 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 9.9e-16 87.4 72 48.6
MD13G1048800 Malus domestica HOM05D004290 ORTHO05D005025 4.9e-15 85.1 64 59.4
RcHm_v2.0_Chr2g0142051 Rosa chinensis HOM05D004290 ORTHO05D005025 4.9e-15 85.1 50 66.0
vmacro10513 Vaccinium macrocarpon HOM05D004290 ORTHO05D005025 1.1e-14 84.0 66 62.1
Oeu018290.1 Olea europaea HOM05D004290 ORTHO05D005025 1.4e-14 83.6 55 60.0
Prupe.1G303300 Prunus persica HOM05D004290 ORTHO05D005025 1.4e-14 83.6 103 44.7
BcaB03g15846 Brassica carinata HOM05D004290 ORTHO05D005025 1.2e-10 70.5 74 59.5
Sopen03g019130 Solanum pennellii HOM05D006181 ORTHO05D008560 8.9e-09 64.3 65 52.3
FvH4_6g51211 Fragaria vesca HOM05D004290 ORTHO05D005025 4.4e-08 62.0 42 66.7
TAR629G2250 Trochodendron aralioides HOM05D004290 ORTHO05D005025 2.2e-07 59.7 38 57.9


User provided reference genes

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