Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G27490 Arabidopsis lyrata HOM05D006290 ORTHO05D007734 2.1e-56 222.2 122 100.0
AT1G68585 Arabidopsis thaliana HOM05D006290 ORTHO05D007734 1.2e-51 206.5 116 96.6
Carub.0002s1512 Capsella rubella HOM05D006290 ORTHO05D007734 2.7e-51 205.3 115 97.4
BcaB03g15431 Brassica carinata HOM05D006290 ORTHO05D007734 3.4e-46 188.3 119 89.9
Thhalv10019326m.g Eutrema salsugineum HOM05D006290 ORTHO05D007734 9.8e-46 186.8 116 87.9
Sp5g23690 Schrenkiella parvula HOM05D006290 ORTHO05D007734 1.3e-45 186.4 122 85.2
BcaC08g45955 Brassica carinata HOM05D006290 ORTHO05D007734 2.4e-44 182.2 116 86.2
BcaC03g14971 Brassica carinata HOM05D006290 ORTHO05D007734 7.1e-44 180.6 120 82.5
CARHR061380 Cardamine hirsuta HOM05D006290 ORTHO05D007734 7.1e-44 180.6 119 84.0
C06p37490 Brassica napus HOM05D006290 ORTHO05D007734 2.7e-43 178.7 117 86.3
BolC6t38851H Brassica oleracea HOM05D006290 ORTHO05D007734 2.7e-43 178.7 117 86.3
BraA07t30820Z Brassica rapa HOM05D006290 ORTHO05D007734 2.7e-43 178.7 117 86.3
C02p25020 Brassica napus HOM05D006290 ORTHO05D007734 3.5e-43 178.3 121 82.6
A07p31920 Brassica napus HOM05D006290 ORTHO05D007734 7.8e-43 177.2 117 85.5
BolC2t08586H Brassica oleracea HOM05D006290 ORTHO05D007734 1.7e-42 176.0 121 81.8
BcaB05g24400 Brassica carinata HOM05D006290 ORTHO05D007734 3.9e-42 174.9 122 82.8
A02p15210 Brassica napus HOM05D006290 ORTHO05D007734 5.1e-42 174.5 121 81.0
BraA02t06584Z Brassica rapa HOM05D006290 ORTHO05D007734 6.6e-42 174.1 121 80.2
THA.LOC104821947 Tarenaya hassleriana HOM05D006290 ORTHO05D007734 1.7e-34 149.4 116 75.0
Aa31sc179G60 Aethionema arabicum HOM05D006290 ORTHO05D007734 2.5e-33 145.6 101 79.2
Atru.chr11.1291 Acer truncatum HOM05D006290 ORTHO05D007734 1.9e-20 102.8 97 61.9
QL01p043858 Quercus lobata HOM05D006290 ORTHO05D007734 6.0e-19 97.8 112 52.7
BcaC08g45952 Brassica carinata HOM05D006290 ORTHO05D007734 1.0e-18 97.1 59 91.5
Haze_17464 Corylus avellana HOM05D006290 ORTHO05D007734 1.0e-18 97.1 103 54.4
C06p41250 Brassica napus HOM05D006290 ORTHO05D007734 3.0e-18 95.5 61 85.2
Cfa018610 Carpinus fangiana HOM05D006290 ORTHO05D007734 8.7e-18 94.0 103 53.4
CiPaw.15G083600 Carya illinoinensis HOM05D006290 ORTHO05D007734 5.6e-17 91.3 95 52.6
Potri.008G119300 Populus trichocarpa HOM05D006290 ORTHO05D007734 7.3e-17 90.9 90 58.9
Sabra10G0096300 Salix brachista HOM05D006290 ORTHO05D007734 7.3e-17 90.9 73 65.8
Thecc.02G357300 Theobroma cacao HOM05D006290 ORTHO05D007734 7.3e-17 90.9 94 56.4
Eucgr.G02333 Eucalyptus grandis HOM05D006290 ORTHO05D007734 2.1e-16 89.4 96 56.2
Manes.14G100600 Manihot esculenta HOM05D006290 ORTHO05D007734 3.6e-16 88.6 88 56.8
Potri.010G126800 Populus trichocarpa HOM05D006290 ORTHO05D007734 3.6e-16 88.6 103 53.4
Duzib251G0521 Durio zibethinus HOM05D006290 ORTHO05D007734 8.1e-16 87.4 95 55.8
TWI75G0318 Tripterygium wilfordii HOM05D006290 ORTHO05D007734 8.1e-16 87.4 76 63.2
COL.COLO4_07905 Corchorus olitorius HOM05D001580 ORTHO05D001517 1.4e-15 86.7 110 50.9
Dinv21105 Davidia involucrata HOM05D001580 ORTHO05D001517 1.8e-15 86.3 101 51.5
CANSAT64G2445 Cannabis sativa HOM05D006290 ORTHO05D007734 5.3e-15 84.7 60 68.3
Gohir.A13G054000 Gossypium hirsutum HOM05D006290 ORTHO05D007734 6.9e-15 84.3 90 51.1
Gohir.D13G071500 Gossypium hirsutum HOM05D006290 ORTHO05D007734 6.9e-15 84.3 90 51.1
Gorai.013G081900 Gossypium raimondii HOM05D006290 ORTHO05D007734 6.9e-15 84.3 90 51.1
MD13G1043600 Malus domestica HOM05D006290 ORTHO05D007734 1.5e-14 83.2 95 49.5
TWI79G1749 Tripterygium wilfordii HOM05D006290 ORTHO05D007734 1.5e-14 83.2 76 61.8
Hma1.2p1_3293F.1_g334960 Hydrangea macrophylla HOM05D006290 ORTHO05D007734 2.6e-14 82.4 101 50.5
Psat6g229000 Pisum sativum HOM05D006290 ORTHO05D007734 3.4e-14 82.0 84 50.0
Gohir.A12G168000 Gossypium hirsutum HOM05D006290 ORTHO05D007734 7.6e-14 80.9 66 62.1
Gohir.D12G171600 Gossypium hirsutum HOM05D006290 ORTHO05D007734 7.6e-14 80.9 66 62.1
Duzib248G0641 Durio zibethinus HOM05D006108 ORTHO05D007605 2.9e-13 79.0 76 57.9
TAR371G1266 Trochodendron aralioides HOM05D006108 ORTHO05D007605 2.9e-13 79.0 70 60.0
Oeu033294.1 Olea europaea HOM05D006290 ORTHO05D007734 3.8e-13 78.6 106 44.3
Phvul.003G034800 Phaseolus vulgaris HOM05D006290 ORTHO05D007734 6.4e-13 77.8 95 48.4
GSVIVG01011914001 Vitis vinifera HOM05D006290 ORTHO05D007734 6.4e-13 77.8 98 49.0
Gorai.008G184100 Gossypium raimondii HOM05D006290 ORTHO05D007734 1.1e-12 77.0 67 61.2
FvH4_4g27620 Fragaria vesca HOM05D006290 ORTHO05D007734 1.9e-12 76.3 93 47.3
Nitab4.5_0001914g0020 Nicotiana tabacum HOM05D006290 ORTHO05D007734 1.9e-12 76.3 73 57.5
vmacro10549 Vaccinium macrocarpon HOM05D006290 ORTHO05D007734 2.4e-12 75.9 61 68.9
EL10Ac6g14437 Beta vulgaris HOM05D006290 ORTHO05D007734 3.2e-12 75.5 92 42.4
PGR119G1521 Punica granatum HOM05D006290 ORTHO05D007734 3.2e-12 75.5 67 58.2
MSTRG.826 Avicennia marina HOM05D006290 ORTHO05D007734 4.2e-12 75.1 87 47.1
Duzib268G1644 Durio zibethinus HOM05D006290 ORTHO05D007734 4.2e-12 75.1 75 60.0
Medtr1g111150 Medicago truncatula HOM05D006290 ORTHO05D007734 4.2e-12 75.1 99 48.5
SGA_v2.0_scaffold124G33547 Striga asiatica HOM05D006290 ORTHO05D007734 4.2e-12 75.1 60 63.3
Actinidia16641 Actinidia chinensis HOM05D006290 ORTHO05D007734 5.4e-12 74.7 68 63.2
Glyma.01G082500 Glycine max HOM05D006290 ORTHO05D007734 7.1e-12 74.3 97 46.4
Lj2g0005219 Lotus japonicus HOM05D006290 ORTHO05D007734 9.3e-12 73.9 95 44.2
Lj5g0001389 Lotus japonicus HOM05D006290 ORTHO05D007734 9.3e-12 73.9 104 46.2
Peaxi162Scf00004g01813 Petunia axillaris HOM05D006290 ORTHO05D007734 9.3e-12 73.9 73 57.5
Rhsim09G0109500 Rhododendron simsii HOM05D006290 ORTHO05D007734 9.3e-12 73.9 77 55.8
ClCG05G022830 Citrullus lanatus HOM05D006290 ORTHO05D007734 1.6e-11 73.2 97 46.4
Ciclev10033212m.g Citrus clementina HOM05D006290 ORTHO05D007734 1.6e-11 73.2 50 70.0
DCAR_023668 Daucus carota HOM05D000325 ORTHO05D002981 1.6e-11 73.2 71 56.3
Lalb_Chr21g0309011 Lupinus albus HOM05D006290 ORTHO05D007734 1.6e-11 73.2 57 63.2
Sc14g0007550 Simmondsia chinensis HOM05D006290 ORTHO05D007734 1.6e-11 73.2 92 47.8
Glyma.10G275300 Glycine max HOM05D006290 ORTHO05D007734 2.1e-11 72.8 65 58.5
Manes.06G069950 Manihot esculenta HOM05D006290 ORTHO05D007734 2.1e-11 72.8 75 53.3
MSTRG.13517 Avicennia marina HOM05D006290 ORTHO05D007734 2.7e-11 72.4 61 59.0
Phvul.007G026200 Phaseolus vulgaris HOM05D006290 ORTHO05D007734 2.7e-11 72.4 59 59.3
Glyma.20G114400 Glycine max HOM05D006290 ORTHO05D007734 4.6e-11 71.6 59 57.6
Nitab4.5_0003285g0030 Nicotiana tabacum HOM05D006290 ORTHO05D007734 4.6e-11 71.6 100 42.0
Ca_11183_v3 Cicer arietinum L. HOM05D006290 ORTHO05D007734 6.0e-11 71.2 60 63.3
DCAR_007237 Daucus carota HOM05D006290 ORTHO05D007734 6.0e-11 71.2 116 47.4
Migut.L01076 Erythranthe guttata HOM05D006290 ORTHO05D007734 6.0e-11 71.2 94 46.8
TPR.G38332 Trifolium pratense HOM05D006290 ORTHO05D007734 6.0e-11 71.2 58 63.8
CsaV3_5G034200 Cucumis sativus L. HOM05D006290 ORTHO05D007734 7.9e-11 70.9 98 43.9
AUR62002889 Chenopodium quinoa HOM05D006290 ORTHO05D007734 1.0e-10 70.5 59 54.2
Hund05756 Selenicereus undatus HOM05D006290 ORTHO05D007734 1.0e-10 70.5 96 39.6
Glyma.08G263700 Glycine max HOM05D006290 ORTHO05D007734 1.3e-10 70.1 97 45.4
Sed0010442 Sechium edule HOM05D006290 ORTHO05D007734 1.3e-10 70.1 97 43.3
Lalb_Chr10g0099941 Lupinus albus HOM05D006290 ORTHO05D007734 1.8e-10 69.7 65 55.4
arahy.Tifrunner.gnm1.ann1.89WS3K Arachis hypogaea HOM05D006290 ORTHO05D007734 2.3e-10 69.3 66 60.6
TPR.G26319 Trifolium pratense HOM05D006290 ORTHO05D007734 2.3e-10 69.3 96 45.8
arahy.Tifrunner.gnm1.ann1.N6V5UD Arachis hypogaea HOM05D006290 ORTHO05D007734 3.9e-10 68.6 66 60.6
Oeu020586.1 Olea europaea HOM05D006290 ORTHO05D007734 5.1e-10 68.2 72 54.2
Medtr5g055200 Medicago truncatula HOM05D006290 ORTHO05D007734 6.7e-10 67.8 58 62.1
Aqoxy3G00325 Aquilegia oxysepala HOM05D006290 ORTHO05D007734 1.1e-09 67.0 82 48.8
RcHm_v2.0_Chr4g0435471 Rosa chinensis HOM05D006108 ORTHO05D007605 1.5e-09 66.6 60 56.7
Lalb_Chr17g0342051 Lupinus albus HOM05D006290 ORTHO05D007734 2.5e-09 65.9 92 46.7
Nn4g23807 Nelumbo nucifera HOM05D006290 ORTHO05D007734 2.5e-09 65.9 73 47.9
CiPaw.16G064000 Carya illinoinensis HOM05D006290 ORTHO05D007734 3.3e-09 65.5 41 78.0
Dinv04481 Davidia involucrata HOM05D001580 ORTHO05D001517 3.3e-09 65.5 68 54.4
FAN12G1280 Fragaria x ananassa HOM05D006290 ORTHO05D007734 1.3e-08 63.5 118 37.3
FAN22G0059 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.1e-08 62.8 135 34.1
HanXRQChr16g0529651 Helianthus annuus HOM05D006290 ORTHO05D007734 2.1e-08 62.8 97 39.2
FAN07G1587 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.8e-08 62.4 130 35.4
HanXRQChr17g0567961 Helianthus annuus HOM05D006290 ORTHO05D007734 3.7e-08 62.0 77 48.1
GSVIVG01008271001 Vitis vinifera HOM05D006108 ORTHO05D007605 6.2e-08 61.2 57 52.6
unitig_26.g10264 Utricularia gibba HOM05D000483 ORTHO05D000158 8.1e-08 60.8 83 45.8
ECA234G1725 Erigeron canadensis HOM05D006290 ORTHO05D007734 1.1e-07 60.5 65 50.8
Lsat_1_v5_gn_4_18480 Lactuca sativa HOM05D006290 ORTHO05D007734 1.4e-07 60.1 86 44.2
MD16G1044400 Malus domestica HOM05D006290 ORTHO05D007734 6.9e-07 57.8 39 69.2
MBI12_g30235_MAGBIO Magnolia biondii HOM05D006290 ORTHO05D007734 9.0e-07 57.4 65 50.8
Solyc05g150121.1 Solanum lycopersicum HOM05D006290 ORTHO05D007734 9.0e-07 57.4 73 52.1
CAN.G257.59 Capsicum annuum HOM05D006290 ORTHO05D007734 1.5e-06 56.6 69 43.5
MELO3C012234.2 Cucumis melo HOM05D006290 ORTHO05D007734 2.6e-06 55.8 53 52.8
Sed0022191 Sechium edule HOM05D006290 ORTHO05D007734 2.6e-06 55.8 72 43.1
Peaxi162Scf00634g00115 Petunia axillaris HOM05D006290 ORTHO05D007734 3.4e-06 55.5 73 42.5
Potri.015G053600 Populus trichocarpa HOM05D006290 ORTHO05D007734 5.8e-06 54.7 54 51.9
Solyc12g150113.1 Solanum lycopersicum HOM05D006290 ORTHO05D007734 5.8e-06 54.7 81 42.0
Sopen12g017530 Solanum pennellii HOM05D006290 ORTHO05D007734 5.8e-06 54.7 81 42.0
PGSC0003DMG400021769 Solanum tuberosum HOM05D006290 ORTHO05D007734 5.8e-06 54.7 81 42.0
ECA246G4651 Erigeron canadensis HOM05D006290 ORTHO05D007734 7.6e-06 54.3 58 48.3


User provided reference genes

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