Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G27290 Arabidopsis lyrata HOM05D003134 ORTHO05D003500 1.7e-68 262.7 146 100.0
Carub.0002s1492 Capsella rubella HOM05D003134 ORTHO05D003500 1.2e-58 229.9 152 88.2
AT1G68430 Arabidopsis thaliana HOM05D003134 ORTHO05D003500 2.5e-48 195.7 147 80.3
BolC2t08556H Brassica oleracea HOM05D003134 ORTHO05D003500 4.3e-48 194.9 151 74.2
Sp5g23500 Schrenkiella parvula HOM05D003134 ORTHO05D003500 4.3e-48 194.9 152 75.0
Thhalv10019521m.g Eutrema salsugineum HOM05D003134 ORTHO05D003500 6.2e-47 191.0 153 77.1
BcaB03g15807 Brassica carinata HOM05D003134 ORTHO05D003500 8.2e-47 190.7 146 77.4
BcaC08g46286 Brassica carinata HOM05D003134 ORTHO05D003500 6.9e-46 187.6 146 76.0
BcaB05g24377 Brassica carinata HOM05D003134 ORTHO05D003500 1.5e-45 186.4 151 71.5
A02p14980 Brassica napus HOM05D003134 ORTHO05D003500 2.6e-45 185.7 151 71.5
BraA02t06565Z Brassica rapa HOM05D003134 ORTHO05D003500 2.6e-45 185.7 151 71.5
C02p24530 Brassica napus HOM05D003134 ORTHO05D003500 3.4e-45 185.3 151 72.8
CARHR061210 Cardamine hirsuta HOM05D003134 ORTHO05D003500 2.5e-43 179.1 151 73.5
C06p41530 Brassica napus HOM05D003134 ORTHO05D003500 4.2e-43 178.3 148 76.4
BolC6t39271H Brassica oleracea HOM05D003134 ORTHO05D003500 4.2e-43 178.3 148 76.4
BcaC08g46282 Brassica carinata HOM05D003134 ORTHO05D003500 2.1e-42 176.0 148 75.7
A07p32020 Brassica napus HOM05D003134 ORTHO05D003500 3.5e-42 175.3 151 69.5
BraA07t30832Z Brassica rapa HOM05D003134 ORTHO05D003500 3.5e-42 175.3 151 69.5
A07p34840 Brassica napus HOM05D003134 ORTHO05D003500 4.6e-42 174.9 148 75.7
BraA07t31102Z Brassica rapa HOM05D003134 ORTHO05D003500 4.6e-42 174.9 148 75.7
BcaB03g15416 Brassica carinata HOM05D003134 ORTHO05D003500 1.6e-39 166.4 151 66.9
BcaC08g45971 Brassica carinata HOM05D003134 ORTHO05D003500 3.7e-39 165.2 153 66.0
C06p37610 Brassica napus HOM05D003134 ORTHO05D003500 3.7e-39 165.2 153 66.0
BolC6t38864H Brassica oleracea HOM05D003134 ORTHO05D003500 3.7e-39 165.2 153 66.0
Aa31LG4G14620 Aethionema arabicum HOM05D003134 ORTHO05D003500 1.4e-33 146.7 160 57.5
THA.LOC104808293 Tarenaya hassleriana HOM05D003134 ORTHO05D003500 3.3e-32 142.1 165 56.4
Sabra10G0091400 Salix brachista HOM05D003134 ORTHO05D003500 5.0e-20 101.7 151 47.7
Cpa.g.sc65.57 Carica papaya HOM05D003134 ORTHO05D003500 1.1e-19 100.5 167 49.7
Cfa015853 Carpinus fangiana HOM05D003134 ORTHO05D003500 7.2e-19 97.8 159 48.4
Ciclev10016989m.g Citrus clementina HOM05D003134 ORTHO05D003500 2.7e-18 95.9 171 45.0
Cfa015849 Carpinus fangiana HOM05D003134 ORTHO05D003500 3.6e-18 95.5 158 46.8
Duzib251G0591 Durio zibethinus HOM05D003134 ORTHO05D003500 4.7e-18 95.1 163 44.8
Cfa015852 Carpinus fangiana HOM05D003134 ORTHO05D003500 1.0e-17 94.0 159 47.8
Thecc.02G223300 Theobroma cacao HOM05D003134 ORTHO05D003500 1.0e-17 94.0 165 47.3
TWI31G0745 Tripterygium wilfordii HOM05D003134 ORTHO05D003500 1.0e-17 94.0 166 45.8
COL.COLO4_32156 Corchorus olitorius HOM05D003134 ORTHO05D003500 2.3e-17 92.8 167 43.7
Manes.06G065600 Manihot esculenta HOM05D003134 ORTHO05D003500 3.0e-17 92.4 158 43.7
Gohir.D02G171600 Gossypium hirsutum HOM05D003134 ORTHO05D003500 5.2e-17 91.7 160 44.4
Gorai.005G193000 Gossypium raimondii HOM05D003134 ORTHO05D003500 5.2e-17 91.7 160 44.4
Prupe.1G315800 Prunus persica HOM05D003134 ORTHO05D003500 1.1e-16 90.5 150 46.7
MD16G1038900 Malus domestica HOM05D003134 ORTHO05D003500 7.4e-16 87.8 148 43.9
Gohir.A03G148500 Gossypium hirsutum HOM05D003134 ORTHO05D003500 9.7e-16 87.4 160 43.1
Potri.010G121300 Populus trichocarpa HOM05D003134 ORTHO05D003500 9.7e-16 87.4 155 42.6
Lalb_Chr02g0145791 Lupinus albus HOM05D003134 ORTHO05D003500 4.8e-15 85.1 149 42.3
TAR374G1690 Trochodendron aralioides HOM05D003134 ORTHO05D003500 1.1e-14 84.0 156 38.5
QL01p040313 Quercus lobata HOM05D003134 ORTHO05D003500 2.4e-14 82.8 162 40.7
CiPaw.05G241000 Carya illinoinensis HOM05D003134 ORTHO05D003500 4.1e-14 82.0 167 40.7
ClCG01G005860 Citrullus lanatus HOM05D003134 ORTHO05D003500 7.0e-14 81.3 161 41.0
FvH4_4g26860 Fragaria vesca HOM05D003134 ORTHO05D003500 1.6e-13 80.1 151 43.7
RcHm_v2.0_Chr4g0434621 Rosa chinensis HOM05D003134 ORTHO05D003500 2.0e-13 79.7 150 43.3
CSS0042149 Camellia sinensis var. sinensis HOM05D003134 ORTHO05D003500 4.5e-13 78.6 163 39.9
FAN12G3405 Fragaria x ananassa HOM05D003134 ORTHO05D003500 4.5e-13 78.6 150 42.7
Lsat_1_v5_gn_3_80541 Lactuca sativa HOM05D003134 ORTHO05D003500 7.7e-13 77.8 155 40.0
FAN03G2307 Fragaria x ananassa HOM05D003134 ORTHO05D003500 1.3e-12 77.0 161 39.8
FAN22G0900 Fragaria x ananassa HOM05D003134 ORTHO05D003500 1.3e-12 77.0 149 42.3
FAN02G1640 Fragaria x ananassa HOM05D003134 ORTHO05D003500 2.2e-12 76.3 162 39.5
Glyma.20G119200 Glycine max HOM05D003134 ORTHO05D003500 2.2e-12 76.3 153 41.2
FAN10G2348 Fragaria x ananassa HOM05D003134 ORTHO05D003500 2.9e-12 75.9 164 45.1
Peaxi162Scf00104g00142 Petunia axillaris HOM05D003134 ORTHO05D003500 2.9e-12 75.9 158 39.2
Rhsim08G0083300 Rhododendron simsii HOM05D003134 ORTHO05D003500 2.9e-12 75.9 163 37.4
FAN10G3294 Fragaria x ananassa HOM05D000266 ORTHO05D000765 3.8e-12 75.5 164 45.7
Lj4P188T25 Lonicera japonica HOM05D003134 ORTHO05D003500 3.8e-12 75.5 158 40.5
Nn3g17932 Nelumbo nucifera HOM05D003134 ORTHO05D003500 3.8e-12 75.5 163 38.0
Duzib268G0372 Durio zibethinus HOM05D003134 ORTHO05D003500 5.0e-12 75.1 165 44.2
TAR433G0003 Trochodendron aralioides HOM05D003134 ORTHO05D003500 8.5e-12 74.3 156 39.7
CANSAT78G1475 Cannabis sativa HOM05D003134 ORTHO05D003500 1.1e-11 73.9 174 38.5
Cpa.g.sc170.42 Carica papaya HOM05D003134 ORTHO05D003500 1.1e-11 73.9 170 39.4
SalBow5G3107 Salvia bowleyana HOM05D003134 ORTHO05D003500 1.1e-11 73.9 157 40.8
SalBow5G4218 Salvia bowleyana HOM05D003134 ORTHO05D003500 1.1e-11 73.9 157 40.8
CANSAT01G0067 Cannabis sativa HOM05D003134 ORTHO05D003500 1.5e-11 73.6 179 38.0
FAN28G2684 Fragaria x ananassa HOM05D003134 ORTHO05D003500 1.5e-11 73.6 164 43.9
PGR119G2525 Punica granatum HOM05D003134 ORTHO05D003500 1.5e-11 73.6 162 40.7
FAN14G3652 Fragaria x ananassa HOM05D003134 ORTHO05D003500 2.5e-11 72.8 162 37.0
FAN23G1965 Fragaria x ananassa HOM05D003134 ORTHO05D003500 2.5e-11 72.8 164 42.1
MD13G1036300 Malus domestica HOM05D003134 ORTHO05D003500 2.5e-11 72.8 148 39.9
VMungo0720G1250 Vigna mungo HOM05D000260 ORTHO05D000318 2.5e-11 72.8 150 39.3
PGR042G1462 Punica granatum HOM05D003134 ORTHO05D003500 3.2e-11 72.4 163 39.3
Medtr1g110190 Medicago truncatula HOM05D003134 ORTHO05D003500 4.2e-11 72.0 151 41.7
Oeu039736.1 Olea europaea HOM05D003134 ORTHO05D003500 4.2e-11 72.0 163 38.0
FAN16G3541 Fragaria x ananassa HOM05D003134 ORTHO05D003500 5.5e-11 71.6 164 44.5
Nitab4.5_0000625g0110 Nicotiana tabacum HOM05D003134 ORTHO05D003500 5.5e-11 71.6 165 37.0
Hma1.2p1_1109F.1_g258190 Hydrangea macrophylla HOM05D003134 ORTHO05D003500 7.2e-11 71.2 159 39.6
FAN01G0579 Fragaria x ananassa HOM05D003134 ORTHO05D003500 1.2e-10 70.5 162 38.3
Lj5g0013847 Lotus japonicus HOM05D003134 ORTHO05D003500 1.2e-10 70.5 163 41.1
Nitab4.5_0015828g0010 Nicotiana tabacum HOM05D003134 ORTHO05D003500 1.2e-10 70.5 165 37.6
PGSC0003DMG400002449 Solanum tuberosum HOM05D003134 ORTHO05D003500 1.2e-10 70.5 172 37.2
Ciclev10013038m.g Citrus clementina HOM05D003134 ORTHO05D003500 1.6e-10 70.1 153 37.3
FAN17G2365 Fragaria x ananassa HOM05D003134 ORTHO05D003500 1.6e-10 70.1 147 38.8
MELO3C005343.2 Cucumis melo HOM05D003134 ORTHO05D003500 2.1e-10 69.7 169 40.2
CsaV3_5G028830 Cucumis sativus L. HOM05D003134 ORTHO05D003500 2.1e-10 69.7 167 39.5
Dinv33962 Davidia involucrata HOM05D003134 ORTHO05D003500 2.1e-10 69.7 165 39.4
FvH4_7g03610 Fragaria vesca HOM05D003134 ORTHO05D003500 2.7e-10 69.3 163 44.2
FAN06G4960 Fragaria x ananassa HOM05D003134 ORTHO05D003500 2.7e-10 69.3 163 44.2
Prupe.3G146400 Prunus persica HOM05D003134 ORTHO05D003500 2.7e-10 69.3 170 38.8
TAR622G0779 Trochodendron aralioides HOM05D003134 ORTHO05D003500 2.7e-10 69.3 157 35.7
TAR622G1269 Trochodendron aralioides HOM05D003134 ORTHO05D003500 2.7e-10 69.3 157 35.7
Haze_14180 Corylus avellana HOM05D003134 ORTHO05D003500 3.6e-10 68.9 176 36.4
MD17G1247700 Malus domestica HOM05D003134 ORTHO05D003500 3.6e-10 68.9 169 37.9
Sabra04G0066000 Salix brachista HOM05D003134 ORTHO05D003500 3.6e-10 68.9 158 37.3
Sed0004988 Sechium edule HOM05D003134 ORTHO05D003500 3.6e-10 68.9 153 37.3
PGSC0003DMG400024380 Solanum tuberosum HOM05D003134 ORTHO05D003500 3.6e-10 68.9 172 36.6
Oeu012575.1 Olea europaea HOM05D003134 ORTHO05D003500 4.7e-10 68.6 167 37.7
Psat6g225360 Pisum sativum HOM05D003134 ORTHO05D003500 4.7e-10 68.6 149 38.3
Potri.017G117866 Populus trichocarpa HOM05D003134 ORTHO05D003500 4.7e-10 68.6 153 40.5
FAN07G2257 Fragaria x ananassa HOM05D003134 ORTHO05D003500 6.1e-10 68.2 145 41.4
Glyma.02G088600 Glycine max HOM05D003134 ORTHO05D003500 6.1e-10 68.2 158 44.3
Oeu012577.1 Olea europaea HOM05D003134 ORTHO05D003500 6.1e-10 68.2 163 36.8
Phvul.007G030600 Phaseolus vulgaris HOM05D003134 ORTHO05D003500 6.1e-10 68.2 150 40.0
Solyc03g034300.1 Solanum lycopersicum HOM05D003134 ORTHO05D003500 8.0e-10 67.8 159 39.0
RcHm_v2.0_Chr1g0326241 Rosa chinensis HOM05D003134 ORTHO05D003500 1.0e-09 67.4 174 36.2
Sed0007756 Sechium edule HOM05D003134 ORTHO05D003500 1.0e-09 67.4 162 38.9
PSO017G0284 Papaver somniferum HOM05D003134 ORTHO05D003500 1.4e-09 67.0 171 34.5
THA.LOC104823851 Tarenaya hassleriana HOM05D003134 ORTHO05D003500 1.4e-09 67.0 160 38.8
DCAR_021449 Daucus carota HOM05D003134 ORTHO05D003500 2.3e-09 66.2 155 37.4
Migut.H00233 Erythranthe guttata HOM05D003134 ORTHO05D003500 2.3e-09 66.2 176 36.9
Sc10g0001080 Simmondsia chinensis HOM05D003134 ORTHO05D003500 2.3e-09 66.2 162 41.4
Solyc02g086260.1 Solanum lycopersicum HOM05D003134 ORTHO05D003500 2.3e-09 66.2 162 37.7
BcaB03g15220 Brassica carinata HOM05D003134 ORTHO05D003500 4.0e-09 65.5 170 34.7
CsaV3_2G033780 Cucumis sativus L. HOM05D003134 ORTHO05D003500 4.0e-09 65.5 172 37.2
Dinv34801 Davidia involucrata HOM05D003134 ORTHO05D003500 4.0e-09 65.5 162 39.5
Atru.chr1.1630 Acer truncatum HOM05D003134 ORTHO05D003500 8.8e-09 64.3 154 35.7
C06p43260 Brassica napus HOM05D003134 ORTHO05D003500 8.8e-09 64.3 167 34.1
Cc07_g08620 Coffea canephora HOM05D003134 ORTHO05D003500 8.8e-09 64.3 171 36.8
Migut.L00500 Erythranthe guttata HOM05D003134 ORTHO05D003500 8.8e-09 64.3 169 37.9
Glyma.18G294900 Glycine max HOM05D003134 ORTHO05D003500 8.8e-09 64.3 157 43.3
PSO170G0811 Papaver somniferum HOM05D003134 ORTHO05D003500 8.8e-09 64.3 169 33.7
SalBow3G2725 Salvia bowleyana HOM05D003134 ORTHO05D003500 8.8e-09 64.3 155 37.4
CiPaw.03G063500 Carya illinoinensis HOM05D003134 ORTHO05D003500 1.2e-08 63.9 185 33.0
MELO3C008147.2 Cucumis melo HOM05D003134 ORTHO05D003500 1.2e-08 63.9 169 36.1
Sp5g21880 Schrenkiella parvula HOM05D003134 ORTHO05D003500 1.2e-08 63.9 167 34.1
TPR.G36596 Trifolium pratense HOM05D003134 ORTHO05D003500 1.2e-08 63.9 163 35.0
Ca_08085_v3 Cicer arietinum L. HOM05D003134 ORTHO05D003500 1.5e-08 63.5 161 36.6
Thhalv10019248m.g Eutrema salsugineum HOM05D003134 ORTHO05D003500 1.5e-08 63.5 169 34.9
HanXRQChr12g0375681 Helianthus annuus HOM05D003134 ORTHO05D003500 1.5e-08 63.5 161 36.6
Potri.008G123800 Populus trichocarpa HOM05D003134 ORTHO05D003500 1.5e-08 63.5 69 60.9
Sopen03g007090 Solanum pennellii HOM05D003134 ORTHO05D003500 1.5e-08 63.5 162 37.0
Cfa007900 Carpinus fangiana HOM05D003134 ORTHO05D003500 2.0e-08 63.2 175 33.7
ClCG11G007810 Citrullus lanatus HOM05D003134 ORTHO05D003500 2.0e-08 63.2 169 35.5
Lalb_Chr06g0165891 Lupinus albus HOM05D003134 ORTHO05D003500 2.0e-08 63.2 149 41.6
Manes.02G070500 Manihot esculenta HOM05D003134 ORTHO05D003500 2.6e-08 62.8 166 34.9
SGA_v2.0_scaffold49G18114 Striga asiatica HOM05D003134 ORTHO05D003500 2.6e-08 62.8 159 38.4
Lalb_Chr10g0091341 Lupinus albus HOM05D003134 ORTHO05D003500 3.3e-08 62.4 152 38.2
Manes.01G112200 Manihot esculenta HOM05D003134 ORTHO05D003500 3.3e-08 62.4 162 36.4
QL02p049588 Quercus lobata HOM05D003134 ORTHO05D003500 3.3e-08 62.4 184 35.3
FAN12G3727 Fragaria x ananassa HOM05D003134 ORTHO05D003500 4.4e-08 62.0 82 53.7
Psat3g098080 Pisum sativum HOM05D003134 ORTHO05D003500 4.4e-08 62.0 165 34.5
Sp7g03820 Schrenkiella parvula HOM05D003134 ORTHO05D003500 4.4e-08 62.0 170 33.5
VMungo1383G0351 Vigna mungo HOM05D003134 ORTHO05D003500 4.4e-08 62.0 162 40.7
Nitab4.5_0000753g0120 Nicotiana tabacum HOM05D003134 ORTHO05D003500 7.5e-08 61.2 89 49.4
unitig_0.g841 Utricularia gibba HOM05D003134 ORTHO05D003500 1.3e-07 60.5 146 30.8
AUR62009019 Chenopodium quinoa HOM05D003134 ORTHO05D003500 2.2e-07 59.7 173 36.4
Oeu008433.1 Olea europaea HOM05D003134 ORTHO05D003500 2.2e-07 59.7 165 33.3
THA.LOC104805579 Tarenaya hassleriana HOM05D003134 ORTHO05D003500 2.2e-07 59.7 177 32.8
AUR62023283 Chenopodium quinoa HOM05D003134 ORTHO05D003500 2.8e-07 59.3 172 32.6
QL02p050634 Quercus lobata HOM05D003134 ORTHO05D003500 2.8e-07 59.3 183 33.9
AT1G66890 Arabidopsis thaliana HOM05D003134 ORTHO05D003500 3.7e-07 58.9 165 34.5
Lj1g0014230 Lotus japonicus HOM05D003134 ORTHO05D003500 3.7e-07 58.9 171 38.6
EL10Ac2g04546 Beta vulgaris HOM05D003134 ORTHO05D003500 4.8e-07 58.5 171 31.6
Oeu030792.1 Olea europaea HOM05D000260 ORTHO05D000318 6.3e-07 58.2 145 34.5
Sed0003377 Sechium edule HOM05D003134 ORTHO05D003500 8.2e-07 57.8 157 37.6
Gohir.A11G165400 Gossypium hirsutum HOM05D003134 ORTHO05D003500 1.1e-06 57.4 170 32.9
Phvul.008G007800 Phaseolus vulgaris HOM05D003134 ORTHO05D003500 1.1e-06 57.4 155 41.3
Actinidia17642 Actinidia chinensis HOM05D003134 ORTHO05D003500 1.4e-06 57.0 151 37.1
BraA07t30998Z Brassica rapa HOM05D003134 ORTHO05D003500 1.4e-06 57.0 171 32.7
Peaxi162Scf00394g00095 Petunia axillaris HOM05D003134 ORTHO05D003500 1.4e-06 57.0 92 46.7
A07p33710 Brassica napus HOM05D003134 ORTHO05D003500 1.8e-06 56.6 171 32.7
Potri.004G097200 Populus trichocarpa HOM05D003134 ORTHO05D003500 1.8e-06 56.6 157 34.4
Gohir.D11G171400 Gossypium hirsutum HOM05D003134 ORTHO05D003500 2.4e-06 56.2 170 32.4
Gorai.007G183800 Gossypium raimondii HOM05D003134 ORTHO05D003500 2.4e-06 56.2 170 32.4
Oeu036853.1 Olea europaea HOM05D003134 ORTHO05D003500 2.4e-06 56.2 163 32.5
Medtr7g082520 Medicago truncatula HOM05D003134 ORTHO05D003500 3.1e-06 55.8 162 34.0
BcaC08g46122 Brassica carinata HOM05D003134 ORTHO05D003500 4.1e-06 55.5 168 33.3
Lsat_1_v5_gn_2_81120 Lactuca sativa HOM05D003134 ORTHO05D003500 4.1e-06 55.5 163 35.0
AL2G25140 Arabidopsis lyrata HOM05D003134 ORTHO05D003500 5.3e-06 55.1 166 32.5
Haze_24605 Corylus avellana HOM05D003134 ORTHO05D003500 5.3e-06 55.1 45 66.7
PGSC0003DMG400026385 Solanum tuberosum HOM05D001447 ORTHO05D005923 7.0e-06 54.7 95 46.3
Aa31LG2G3400 Aethionema arabicum HOM05D003134 ORTHO05D003500 9.1e-06 54.3 179 32.4
ATR1125G046 Amborella trichopoda HOM05D003134 ORTHO05D003500 9.1e-06 54.3 171 32.7


User provided reference genes

Program Settings