Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G27140 Arabidopsis lyrata HOM05D002269 ORTHO05D002421 5.9e-32 140.2 68 100.0
Carub.0002s1480 Capsella rubella HOM05D002269 ORTHO05D002421 6.5e-15 83.6 42 92.9
AT1G68310 Arabidopsis thaliana HOM05D002269 ORTHO05D002421 3.2e-14 81.3 42 90.5
CARHR060990 Cardamine hirsuta HOM05D002269 ORTHO05D002421 2.7e-13 78.2 42 83.3
A02p14860 Brassica napus HOM05D002269 ORTHO05D002421 1.8e-12 75.5 46 76.1
BraA02t06553Z Brassica rapa HOM05D002269 ORTHO05D002421 1.8e-12 75.5 46 76.1
Sp5g23360 Schrenkiella parvula HOM05D002269 ORTHO05D002421 4.0e-12 74.3 42 81.0
BcaC03g14935 Brassica carinata HOM05D002269 ORTHO05D002421 5.2e-12 73.9 46 73.9
C02p24310 Brassica napus HOM05D002269 ORTHO05D002421 5.2e-12 73.9 46 73.9
BolC2t08543H Brassica oleracea HOM05D002269 ORTHO05D002421 5.2e-12 73.9 46 73.9
BcaB05g24362 Brassica carinata HOM05D002269 ORTHO05D002421 1.5e-11 72.4 44 75.0
Thhalv10019265m.g Eutrema salsugineum HOM05D002269 ORTHO05D002421 3.4e-11 71.2 42 78.6
Manes.03G078116 Manihot esculenta HOM05D002269 ORTHO05D002421 2.4e-09 65.1 48 64.6
CSS0004410 Camellia sinensis var. sinensis HOM05D002269 ORTHO05D002421 5.4e-09 63.9 45 66.7
CSS0015281 Camellia sinensis var. sinensis HOM05D002269 ORTHO05D002421 5.4e-09 63.9 45 66.7
THA.LOC104821912 Tarenaya hassleriana HOM05D002269 ORTHO05D002421 5.4e-09 63.9 42 69.0
arahy.Tifrunner.gnm1.ann1.988I9X Arachis hypogaea HOM05D002269 ORTHO05D002421 1.2e-08 62.8 47 70.2
arahy.Tifrunner.gnm1.ann1.E7GDE8 Arachis hypogaea HOM05D002269 ORTHO05D002421 1.2e-08 62.8 47 70.2
Thhalv10012130m.g Eutrema salsugineum HOM05D002269 ORTHO05D002421 1.2e-08 62.8 38 71.1
CSS0035166 Camellia sinensis var. sinensis HOM05D002269 ORTHO05D002421 1.6e-08 62.4 44 68.2
Thecc.09G239300 Theobroma cacao HOM05D002269 ORTHO05D002421 1.6e-08 62.4 44 65.9
Oeu017090.1 Olea europaea HOM05D002269 ORTHO05D002421 2.0e-08 62.0 45 66.7
PGR031G3026 Punica granatum HOM05D002269 ORTHO05D002421 2.0e-08 62.0 44 63.6
TWI60G0852 Tripterygium wilfordii HOM05D002269 ORTHO05D002421 2.0e-08 62.0 42 64.3
CSS0042614 Camellia sinensis var. sinensis HOM05D002269 ORTHO05D002421 2.7e-08 61.6 45 64.4
Gohir.D07G127100 Gossypium hirsutum HOM05D002269 ORTHO05D002421 3.5e-08 61.2 41 65.9
Medtr5g028010 Medicago truncatula HOM05D002269 ORTHO05D002421 3.5e-08 61.2 47 66.0
BcaC08g46264 Brassica carinata HOM05D002269 ORTHO05D002421 4.5e-08 60.8 46 65.2
BcaC08g46265 Brassica carinata HOM05D002269 ORTHO05D002421 4.5e-08 60.8 46 65.2
BcaC08g46262 Brassica carinata HOM05D002269 ORTHO05D002421 5.9e-08 60.5 49 63.3
Prupe.1G100200 Prunus persica HOM05D002269 ORTHO05D002421 5.9e-08 60.5 46 63.0
RcHm_v2.0_Chr7g0212191 Rosa chinensis HOM05D002269 ORTHO05D002421 5.9e-08 60.5 45 64.4
Eucgr.D02638 Eucalyptus grandis HOM05D002269 ORTHO05D002421 7.7e-08 60.1 44 63.6
Nitab4.5_0002897g0010 Nicotiana tabacum HOM05D002269 ORTHO05D002421 7.7e-08 60.1 42 69.0
vmacro00264 Vaccinium macrocarpon HOM05D002269 ORTHO05D002421 1.0e-07 59.7 45 62.2
BolC6t39257H Brassica oleracea HOM05D002269 ORTHO05D002421 1.3e-07 59.3 56 57.1
ClCG09G011580 Citrullus lanatus HOM05D002269 ORTHO05D002421 1.7e-07 58.9 42 64.3
Nn1g01855 Nelumbo nucifera HOM05D002269 ORTHO05D002421 1.7e-07 58.9 42 61.9
BcaB03g15099 Brassica carinata HOM05D002269 ORTHO05D002421 2.3e-07 58.5 45 66.7
BcaB03g15102 Brassica carinata HOM05D002269 ORTHO05D002421 2.3e-07 58.5 45 66.7
A07p34720 Brassica napus HOM05D002269 ORTHO05D002421 2.3e-07 58.5 45 66.7
C06p41690 Brassica napus HOM05D002269 ORTHO05D002421 2.3e-07 58.5 45 66.7
Zm00001eb430080 Zea mays HOM05D002269 ORTHO05D002421 2.9e-07 58.2 42 69.0
Migut.E01321 Erythranthe guttata HOM05D002269 ORTHO05D002421 3.8e-07 57.8 42 61.9
Lalb_Chr09g0325401 Lupinus albus HOM05D002269 ORTHO05D002421 3.8e-07 57.8 58 55.2
MD03G1162900 Malus domestica HOM05D002269 ORTHO05D002421 3.8e-07 57.8 46 63.0
Os04g0596400 Oryza sativa ssp. japonica HOM05D002269 ORTHO05D002421 3.8e-07 57.8 42 66.7
Aqoxy2G02906 Aquilegia oxysepala HOM05D002269 ORTHO05D002421 5.0e-07 57.4 44 65.9
Duzib168G0037 Durio zibethinus HOM05D002269 ORTHO05D002421 5.0e-07 57.4 42 59.5
QL04p055157 Quercus lobata HOM05D002269 ORTHO05D002421 6.6e-07 57.0 45 57.8
EL10Ac5g11998 Beta vulgaris HOM05D002269 ORTHO05D002421 8.6e-07 56.6 45 62.2
Sabra03G0066400 Salix brachista HOM05D002269 ORTHO05D002421 8.6e-07 56.6 45 62.2
Sed0000806 Sechium edule HOM05D002269 ORTHO05D002421 8.6e-07 56.6 42 61.9
A07p32060 Brassica napus HOM05D002269 ORTHO05D002421 1.1e-06 56.2 44 61.4
BraA07t30836Z Brassica rapa HOM05D002269 ORTHO05D002421 1.1e-06 56.2 44 61.4
CSS0022027 Camellia sinensis var. sinensis HOM05D002269 ORTHO05D002421 1.1e-06 56.2 45 62.2
Phvul.002G135400 Phaseolus vulgaris HOM05D002269 ORTHO05D002421 1.1e-06 56.2 43 67.4
Psat2g139840 Pisum sativum HOM05D002269 ORTHO05D002421 1.1e-06 56.2 43 65.1
Potri.003G098000 Populus trichocarpa HOM05D002269 ORTHO05D002421 1.1e-06 56.2 43 65.1
Hund14382 Selenicereus undatus HOM05D002269 ORTHO05D002421 1.1e-06 56.2 45 64.4
SEGI_25839 Sequoiadendron giganteum HOM05D002269 ORTHO05D002421 1.1e-06 56.2 42 61.9
PGSC0003DMG402009322 Solanum tuberosum HOM05D002269 ORTHO05D002421 1.1e-06 56.2 42 61.9
Nitab4.5_0006977g0020 Nicotiana tabacum HOM05D002269 ORTHO05D002421 1.5e-06 55.8 44 65.9
Rhsim02G0002300 Rhododendron simsii HOM05D002269 ORTHO05D002421 1.5e-06 55.8 45 60.0
Rhsim11G0031700 Rhododendron simsii HOM05D002269 ORTHO05D002421 1.5e-06 55.8 45 60.0
Zm00001eb072050 Zea mays HOM05D002269 ORTHO05D002421 1.5e-06 55.8 42 66.7
Lj2A761T4 Lonicera japonica HOM05D002269 ORTHO05D002421 1.9e-06 55.5 46 63.0
Solyc08g076120.3 Solanum lycopersicum HOM05D002269 ORTHO05D002421 1.9e-06 55.5 42 61.9
Ca_25162_v3 Cicer arietinum L. HOM05D002269 ORTHO05D002421 2.5e-06 55.1 45 62.2
Haze_08132 Corylus avellana HOM05D002269 ORTHO05D002421 3.3e-06 54.7 59 50.8
TAR675G0001 Trochodendron aralioides HOM05D002269 ORTHO05D002421 3.3e-06 54.7 47 57.4
Cfa012532 Carpinus fangiana HOM05D004168 ORTHO05D002421 4.2e-06 54.3 46 58.7
Ciclev10002744m.g Citrus clementina HOM05D002269 ORTHO05D002421 5.5e-06 53.9 43 60.5
Glyma.04G121601 Glycine max HOM05D002269 ORTHO05D002421 5.5e-06 53.9 44 65.9
PSO017G3942 Papaver somniferum HOM05D002269 ORTHO05D002421 5.5e-06 53.9 44 56.8
PSO170G1543 Papaver somniferum HOM05D002269 ORTHO05D002421 5.5e-06 53.9 44 56.8
FAN04G1675 Fragaria x ananassa HOM05D002269 ORTHO05D002421 7.2e-06 53.5 42 61.9
MD11G1178900 Malus domestica HOM05D002269 ORTHO05D002421 9.5e-06 53.1 46 58.7
Prupe.6G151700 Prunus persica HOM05D002269 ORTHO05D002421 9.5e-06 53.1 43 60.5
Rhsim06G0207900 Rhododendron simsii HOM05D002269 ORTHO05D002421 9.5e-06 53.1 45 57.8


User provided reference genes

Program Settings