Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G26810 Arabidopsis lyrata HOM05D005481 ORTHO05D006779 1.8e-217 759.2 470 100.0
AT1G68100 Arabidopsis thaliana HOM05D005481 ORTHO05D006779 1.8e-196 689.5 470 93.2
Carub.0002s1458 Capsella rubella HOM05D005481 ORTHO05D006779 1.6e-181 639.8 474 85.9
Sp5g23100 Schrenkiella parvula HOM05D005481 ORTHO05D006779 1.1e-177 627.1 476 82.1
Thhalv10018501m.g Eutrema salsugineum HOM05D005481 ORTHO05D006779 5.1e-175 618.2 475 86.3
BcaC08g45998 Brassica carinata HOM05D005481 ORTHO05D006779 8.4e-170 600.9 480 80.8
BcaB03g15132 Brassica carinata HOM05D005481 ORTHO05D006779 9.3e-169 597.4 462 84.0
A07p34580 Brassica napus HOM05D005481 ORTHO05D006779 2.7e-168 595.9 474 82.7
C06p37930 Brassica napus HOM05D005481 ORTHO05D006779 6.0e-168 594.7 478 81.8
A07p32160 Brassica napus HOM05D005481 ORTHO05D006779 3.7e-165 585.5 488 77.5
BraA07t30846Z Brassica rapa HOM05D005481 ORTHO05D006779 3.7e-165 585.5 488 77.5
BraA07t31076Z Brassica rapa HOM05D005481 ORTHO05D006779 1.4e-164 583.6 474 81.6
BolC6t38892H Brassica oleracea HOM05D005481 ORTHO05D006779 3.1e-164 582.4 480 79.4
C06p41930 Brassica napus HOM05D005481 ORTHO05D006779 1.6e-160 570.1 480 78.1
CARHR060770 Cardamine hirsuta HOM05D005481 ORTHO05D006779 8.2e-157 557.8 419 87.1
BcaC08g46237 Brassica carinata HOM05D005481 ORTHO05D006779 6.9e-156 554.7 477 79.2
THA.LOC104821909 Tarenaya hassleriana HOM05D005481 ORTHO05D006779 3.2e-153 545.8 484 77.9
BolC6t39238H Brassica oleracea HOM05D005481 ORTHO05D006779 3.9e-151 538.9 477 78.0
Aa31LG9G8490 Aethionema arabicum HOM05D005481 ORTHO05D006779 6.7e-151 538.1 479 76.6
Gohir.A12G153800 Gossypium hirsutum HOM05D005481 ORTHO05D006779 1.6e-123 447.2 465 65.4
CSS0011982 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 2.9e-122 443.0 487 61.0
COL.COLO4_27578 Corchorus olitorius HOM05D005481 ORTHO05D006779 3.6e-120 436.0 408 66.4
TPR.G11925 Trifolium pratense HOM05D005481 ORTHO05D006779 8.0e-120 434.9 417 66.4
Gohir.D12G156900 Gossypium hirsutum HOM05D005481 ORTHO05D006779 2.3e-119 433.3 407 66.6
Ca_18192_v3 Cicer arietinum L. HOM05D005481 ORTHO05D006779 3.0e-119 433.0 412 68.2
RcHm_v2.0_Chr4g0433701 Rosa chinensis HOM05D005481 ORTHO05D006779 1.5e-118 430.6 489 61.1
Lj4g0017847 Lotus japonicus HOM05D005481 ORTHO05D006779 4.4e-118 429.1 417 67.4
Potri.008G139900 Populus trichocarpa HOM05D005481 ORTHO05D006779 7.5e-118 428.3 416 61.5
MELO3C020059.2 Cucumis melo HOM05D005481 ORTHO05D006779 1.3e-117 427.6 466 65.9
CsaV3_5G012960 Cucumis sativus L. HOM05D005481 ORTHO05D006779 3.7e-117 426.0 466 66.3
TWI77G0967 Tripterygium wilfordii HOM05D005481 ORTHO05D006779 3.7e-117 426.0 417 66.7
Migut.E00569 Erythranthe guttata HOM05D005481 ORTHO05D006779 6.3e-117 425.2 425 66.8
Eucgr.G02069 Eucalyptus grandis HOM05D005481 ORTHO05D006779 6.3e-117 425.2 502 57.4
Lalb_Chr07g0187931 Lupinus albus HOM05D005481 ORTHO05D006779 6.3e-117 425.2 422 66.8
Manes.15G138800 Manihot esculenta HOM05D005481 ORTHO05D006779 1.4e-116 424.1 428 67.5
Gorai.008G169700 Gossypium raimondii HOM05D005481 ORTHO05D006779 1.8e-116 423.7 427 62.5
CSS0010274 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 2.4e-116 423.3 461 61.0
Atru.chr11.1002 Acer truncatum HOM05D005481 ORTHO05D006779 4.1e-116 422.5 484 64.7
Glyma.05G137400 Glycine max HOM05D005481 ORTHO05D006779 4.1e-116 422.5 456 62.9
MD13G1015600 Malus domestica HOM05D005481 ORTHO05D006779 7.0e-116 421.8 495 62.4
FvH4_4g26130 Fragaria vesca HOM05D005481 ORTHO05D006779 9.1e-116 421.4 410 67.6
FAN17G1043 Fragaria x ananassa HOM05D005481 ORTHO05D006779 2.0e-115 420.2 410 67.6
MD16G1013100 Malus domestica HOM05D005481 ORTHO05D006779 2.0e-115 420.2 500 61.0
TWI74G0731 Tripterygium wilfordii HOM05D005481 ORTHO05D006779 2.7e-115 419.9 416 64.9
Cfa022222 Carpinus fangiana HOM05D005481 ORTHO05D006779 3.5e-115 419.5 488 57.2
FAN07G1071 Fragaria x ananassa HOM05D005481 ORTHO05D006779 3.5e-115 419.5 410 65.1
CANSAT78G1557 Cannabis sativa HOM05D005481 ORTHO05D006779 1.0e-114 417.9 485 62.9
Hma1.2p1_0095F.1_g047500 Hydrangea macrophylla HOM05D005481 ORTHO05D006779 1.3e-114 417.5 421 64.4
Glyma.08G092700 Glycine max HOM05D005481 ORTHO05D006779 2.3e-114 416.8 489 59.7
PSO063G6983 Papaver somniferum HOM05D005481 ORTHO05D006779 2.3e-114 416.8 415 62.7
CiPaw.05G158800 Carya illinoinensis HOM05D005481 ORTHO05D006779 2.9e-114 416.4 423 58.2
Actinidia37496 Actinidia chinensis HOM05D005481 ORTHO05D006779 6.6e-114 415.2 469 59.1
BcaC08g45996 Brassica carinata HOM05D005481 ORTHO05D006779 1.5e-113 414.1 480 64.4
ClCG11G000990 Citrullus lanatus HOM05D005481 ORTHO05D006779 1.5e-113 414.1 414 64.7
SalBow2G3020 Salvia bowleyana HOM05D005481 ORTHO05D006779 1.5e-113 414.1 417 64.5
Sopen04g003490 Solanum pennellii HOM05D005481 ORTHO05D006779 1.5e-113 414.1 427 63.2
Phvul.002G184200 Phaseolus vulgaris HOM05D005481 ORTHO05D006779 7.2e-113 411.8 407 68.3
Aqoxy3G04008 Aquilegia oxysepala HOM05D005481 ORTHO05D006779 1.2e-112 411.0 495 57.8
Dinv20536 Davidia involucrata HOM05D005481 ORTHO05D006779 1.2e-112 411.0 497 60.6
Sed0010601 Sechium edule HOM05D005481 ORTHO05D006779 2.1e-112 410.2 471 58.2
Solyc04g008340.2 Solanum lycopersicum HOM05D005481 ORTHO05D006779 3.6e-112 409.5 427 63.0
Actinidia20106 Actinidia chinensis HOM05D005481 ORTHO05D006779 4.7e-112 409.1 467 56.1
Prupe.1G338200 Prunus persica HOM05D005481 ORTHO05D006779 1.0e-111 407.9 481 60.9
CAN.G966.8 Capsicum annuum HOM05D005481 ORTHO05D006779 1.4e-111 407.5 454 61.7
MSTRG.13650 Avicennia marina HOM05D005481 ORTHO05D006779 1.8e-111 407.1 439 57.2
GSVIVG01011593001 Vitis vinifera HOM05D005481 ORTHO05D006779 3.0e-111 406.4 468 63.2
Cc11_g05700 Coffea canephora HOM05D005481 ORTHO05D006779 6.8e-111 405.2 441 59.9
FAN22G2365 Fragaria x ananassa HOM05D005481 ORTHO05D006779 1.5e-110 404.1 489 60.1
arahy.Tifrunner.gnm1.ann1.31BYXQ Arachis hypogaea HOM05D005481 ORTHO05D006779 3.4e-110 402.9 378 69.3
HanXRQChr17g0566271 Helianthus annuus HOM05D005481 ORTHO05D006779 1.7e-109 400.6 404 68.6
PSO782G1235 Papaver somniferum HOM05D005481 ORTHO05D006779 5.4e-108 395.6 419 61.6
ATR0598G125 Amborella trichopoda HOM05D005481 ORTHO05D006779 1.3e-106 391.0 483 59.4
ECA234G1527 Erigeron canadensis HOM05D005481 ORTHO05D006779 2.9e-106 389.8 392 65.8
SGA_v2.0_scaffold65G22147 Striga asiatica HOM05D005481 ORTHO05D006779 6.6e-106 388.7 426 59.2
FAN12G2411 Fragaria x ananassa HOM05D005481 ORTHO05D006779 1.6e-104 384.0 410 63.9
Duzib251G0084 Durio zibethinus HOM05D005481 ORTHO05D006779 1.8e-103 380.6 404 63.4
EL10Ac8g18625 Beta vulgaris HOM05D005481 ORTHO05D006779 3.1e-103 379.8 403 64.3
Os08g0467400 Oryza sativa ssp. japonica HOM05D005481 ORTHO05D006779 2.9e-101 373.2 433 59.4
TAR622G0189 Trochodendron aralioides HOM05D005481 ORTHO05D006779 1.1e-100 371.3 378 64.3
unitig_22.g5612 Utricularia gibba HOM05D005481 ORTHO05D006779 9.2e-100 368.2 433 57.3
CDE05G3246 Ceratophyllum demersum HOM05D005481 ORTHO05D006779 1.6e-99 367.5 477 57.2
Sabra08G0106000 Salix brachista HOM05D005481 ORTHO05D006779 1.1e-97 361.3 434 58.5
Rhsim09G0085400 Rhododendron simsii HOM05D005481 ORTHO05D006779 1.5e-97 360.9 498 51.6
CDE05G2094 Ceratophyllum demersum HOM05D005481 ORTHO05D006779 4.3e-97 359.4 476 52.1
Lsat_1_v5_gn_4_24241 Lactuca sativa HOM05D005481 ORTHO05D006779 3.6e-96 356.3 405 64.2
Nitab4.5_0000926g0040 Nicotiana tabacum HOM05D005481 ORTHO05D006779 2.3e-95 353.6 420 61.2
BcaB03g15128 Brassica carinata HOM05D005481 ORTHO05D006779 7.5e-94 348.6 477 62.1
QL03p039175 Quercus lobata HOM05D005481 ORTHO05D006779 1.3e-93 347.8 679 43.7
MBI19_g01916_MAGBIO Magnolia biondii HOM05D005481 ORTHO05D006779 3.0e-90 336.7 426 55.9
AUR62033487 Chenopodium quinoa HOM05D005481 ORTHO05D006779 1.2e-86 324.7 376 58.0
Pp3c12_24640 Physcomitrium patens HOM05D005481 ORTHO05D006779 5.8e-86 322.4 419 55.4
Mapoly0096s0003 Marchantia polymorpha HOM05D005481 ORTHO05D006779 4.1e-84 316.2 459 51.2
Mapoly0096s0004 Marchantia polymorpha HOM05D005481 ORTHO05D006779 4.1e-84 316.2 459 51.2
Sc10g0004950 Simmondsia chinensis HOM05D005481 ORTHO05D006779 2.5e-81 307.0 400 54.8
Duzib268G0472 Durio zibethinus HOM05D005481 ORTHO05D006779 4.3e-81 306.2 479 47.0
Hund03668 Selenicereus undatus HOM05D005481 ORTHO05D006779 5.6e-81 305.8 370 61.4
SMO164G0085 Selaginella moellendorffii HOM05D005481 ORTHO05D006779 2.1e-80 303.9 455 48.8
BcaB03g15400 Brassica carinata HOM05D005481 ORTHO05D006779 1.4e-79 301.2 187 85.6
FAN12G2899 Fragaria x ananassa HOM05D005481 ORTHO05D006779 1.4e-79 301.2 280 64.6
Ciclev10018249m.g Citrus clementina HOM05D005481 ORTHO05D006779 5.2e-79 299.3 290 66.9
VMungo0251G3144 Vigna mungo HOM05D005481 ORTHO05D000001 2.3e-74 283.9 280 59.6
Nitab4.5_0007504g0030 Nicotiana tabacum HOM05D005481 ORTHO05D006779 3.0e-74 283.5 293 64.8
Psat7g085400 Pisum sativum HOM05D005481 ORTHO05D006779 4.3e-73 279.6 320 65.6
BcaB03g15126 Brassica carinata HOM05D005481 ORTHO05D006779 6.4e-69 265.8 350 65.7
Thecc.02G303600 Theobroma cacao HOM05D005481 ORTHO05D006779 1.1e-68 265.0 269 66.9
SMO271G0121 Selaginella moellendorffii HOM05D005481 ORTHO05D006779 1.7e-66 257.7 337 51.6
DCAR_002653 Daucus carota HOM05D005481 ORTHO05D006779 3.0e-66 256.9 297 57.2
Peaxi162Scf00337g00010 Petunia axillaris HOM05D005481 ORTHO05D006779 1.9e-65 254.2 282 57.8
Zm00001eb037820 Zea mays HOM05D005481 ORTHO05D006779 2.4e-63 247.3 317 55.8
HPP92_005759 Vanilla planifolia HOM05D005481 ORTHO05D006779 4.9e-61 239.6 404 45.0
AagrBONN_evm.TU.Sc2ySwM_368.3383 Anthoceros agrestis HOM05D005481 ORTHO05D006779 1.4e-60 238.0 318 54.4
BcaB03g15129 Brassica carinata HOM05D005481 ORTHO05D006779 2.7e-59 233.8 375 60.0
Haze_10808 Corylus avellana HOM05D005481 ORTHO05D006779 1.3e-56 224.9 625 37.1
AUR62011097 Chenopodium quinoa HOM05D005481 ORTHO05D006779 2.1e-56 224.2 383 47.5
CBR_g56846 Chara braunii HOM05D005481 ORTHO05D006779 3.2e-44 183.7 491 43.0
Dinv20505 Davidia involucrata HOM05D005481 ORTHO05D006779 3.0e-42 177.2 249 60.6
Oeu062661.1 Olea europaea HOM05D005481 ORTHO05D006779 2.7e-35 154.1 103 77.7
VMungo0251G2403 Vigna mungo HOM05D005481 ORTHO05D006779 3.6e-35 153.7 99 77.8
MCO07G486 Micromonas commoda HOM05D005481 ORTHO05D006779 2.4e-31 141.0 358 29.9
Cpa.g.sc326.1 Carica papaya HOM05D005481 ORTHO05D006779 1.5e-30 138.3 87 79.3
CSS0044880 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 5.0e-29 133.3 119 64.7
SEGI_33830 Sequoiadendron giganteum HOM05D005481 ORTHO05D006779 1.3e-24 118.6 199 43.7
BcaB03g15399 Brassica carinata HOM05D005481 ORTHO05D006779 4.8e-24 116.7 95 91.6
Oeu062663.1 Olea europaea HOM05D005481 ORTHO05D006779 2.6e-22 110.9 97 85.6
Cpa.g.sc326.2 Carica papaya HOM05D005481 ORTHO05D006779 3.5e-22 110.5 80 72.5
C09p44560 Brassica napus HOM05D041588 ORTHO05D006779 1.5e-20 105.1 110 54.5
TAR374G0503 Trochodendron aralioides HOM05D005481 ORTHO05D006779 2.5e-20 104.4 52 88.5
TAR374G1742 Trochodendron aralioides HOM05D005481 ORTHO05D006779 2.5e-20 104.4 107 73.8
C06p31420 Brassica napus HOM05D005481 ORTHO05D006779 1.6e-19 101.7 94 60.6
FAN12G0241 Fragaria x ananassa HOM05D005481 ORTHO05D006779 5.7e-17 93.2 84 60.7
Sc10g0005080 Simmondsia chinensis HOM05D005481 ORTHO05D006779 7.0e-15 86.3 52 76.9
CSS0020286 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 2.9e-13 80.9 96 53.1
CSS0008657 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 5.0e-13 80.1 63 66.7
Ah.09g225960 Amaranthus hybridus HOM05D005481 ORTHO05D006779 5.5e-12 76.6 100 48.0
HanXRQChr16g0527591 Helianthus annuus HOM05D005481 ORTHO05D006779 1.2e-09 68.9 43 81.4
MCO14G334 Micromonas commoda HOM05D005481 ORTHO05D006779 7.5e-09 66.2 140 30.0
CSS0022702 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 9.8e-09 65.9 87 46.0


User provided reference genes

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