Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G26590 Arabidopsis lyrata HOM05D006816 ORTHO05D008666 0.0e+00 1122.5 611 100.0
AT1G67840 Arabidopsis thaliana HOM05D006816 ORTHO05D008666 7.0e-310 1066.6 613 95.6
Carub.0002s1430 Capsella rubella HOM05D006816 ORTHO05D008666 2.4e-302 1041.6 618 93.2
CARHR060480 Cardamine hirsuta HOM05D006816 ORTHO05D008666 1.1e-294 1016.1 619 91.1
Sp5g22850 Schrenkiella parvula HOM05D006816 ORTHO05D008666 1.2e-293 1012.7 623 90.7
Thhalv10018280m.g Eutrema salsugineum HOM05D006816 ORTHO05D008666 2.5e-291 1005.0 625 87.7
BcaB03g15378 Brassica carinata HOM05D006816 ORTHO05D008666 4.2e-286 987.6 624 88.1
BolC6t38923H Brassica oleracea HOM05D006816 ORTHO05D008666 2.7e-285 984.9 623 88.6
C06p38240 Brassica napus HOM05D006816 ORTHO05D008666 7.8e-285 983.4 622 87.8
BcaC08g46032 Brassica carinata HOM05D006816 ORTHO05D008666 1.9e-283 978.8 624 86.7
BraA07t30858Z Brassica rapa HOM05D006816 ORTHO05D008666 4.5e-280 967.6 625 87.0
A07p32350 Brassica napus HOM05D006816 ORTHO05D008666 2.9e-279 964.9 624 87.2
Aa31sc755G30 Aethionema arabicum HOM05D006816 ORTHO05D008666 5.6e-267 924.1 623 80.3
THA.LOC104825556 Tarenaya hassleriana HOM05D006816 ORTHO05D008666 6.1e-237 824.3 626 73.2
Cpa.g.sc33.36 Carica papaya HOM05D006816 ORTHO05D008666 1.1e-206 723.8 625 65.3
Ciclev10030964m.g Citrus clementina HOM05D006816 ORTHO05D008666 2.4e-193 679.5 612 63.4
TAR622G0126 Trochodendron aralioides HOM05D006816 ORTHO05D008666 5.4e-193 678.3 558 66.8
Dinv15216 Davidia involucrata HOM05D006816 ORTHO05D008666 2.3e-191 672.9 617 62.2
Gohir.A03G133700 Gossypium hirsutum HOM05D006816 ORTHO05D008666 3.1e-188 662.5 554 66.1
TWI36G0164 Tripterygium wilfordii HOM05D006816 ORTHO05D008666 4.0e-188 662.1 637 60.0
Gorai.005G177300 Gossypium raimondii HOM05D006816 ORTHO05D008666 2.6e-187 659.4 628 62.1
Gohir.D02G158100 Gossypium hirsutum HOM05D006816 ORTHO05D008666 2.2e-186 656.4 628 61.9
FAN22G0176 Fragaria x ananassa HOM05D006816 ORTHO05D008666 2.9e-186 656.0 557 65.4
FAN17G1412 Fragaria x ananassa HOM05D006816 ORTHO05D008666 1.9e-185 653.3 537 67.0
GSVIVG01000542001 Vitis vinifera HOM05D006816 ORTHO05D008666 2.4e-185 652.9 645 60.3
Ah.02g130220 Amaranthus hybridus HOM05D006816 ORTHO05D008666 1.2e-184 650.6 563 64.5
QL03p057598 Quercus lobata HOM05D006816 ORTHO05D008666 2.1e-184 649.8 570 63.3
COL.COLO4_23463 Corchorus olitorius HOM05D006816 ORTHO05D008666 4.6e-184 648.7 646 58.4
MD13G1099700 Malus domestica HOM05D006816 ORTHO05D008666 4.3e-182 642.1 558 64.7
Manes.13G022900 Manihot esculenta HOM05D006816 ORTHO05D008666 4.3e-182 642.1 654 58.4
Eucgr.H02486 Eucalyptus grandis HOM05D006816 ORTHO05D008666 7.3e-182 641.3 582 61.9
Haze_12261 Corylus avellana HOM05D006816 ORTHO05D008666 5.2e-180 635.2 693 56.0
Lj3C1059T10 Lonicera japonica HOM05D006816 ORTHO05D008666 8.9e-180 634.4 539 64.7
Hund06034 Selenicereus undatus HOM05D006816 ORTHO05D008666 1.2e-179 634.0 560 62.0
CsaV3_5G031010 Cucumis sativus L. HOM05D006816 ORTHO05D008666 3.8e-178 629.0 624 58.3
AUR62024254 Chenopodium quinoa HOM05D006816 ORTHO05D008666 1.0e-175 620.9 595 59.3
Sed0004203 Sechium edule HOM05D006816 ORTHO05D008666 1.7e-175 620.2 565 59.8
MELO3C011940.2 Cucumis melo HOM05D006816 ORTHO05D008666 5.1e-175 618.6 571 60.6
EL10Ac6g13857 Beta vulgaris HOM05D006816 ORTHO05D008666 1.9e-174 616.7 614 57.8
Glyma.05G174600 Glycine max HOM05D006816 ORTHO05D008666 1.2e-173 614.0 542 63.8
Solyc05g013670.3 Solanum lycopersicum HOM05D006816 ORTHO05D008666 2.8e-173 612.8 556 60.3
Atru.chr11.2152 Acer truncatum HOM05D006816 ORTHO05D008666 6.2e-173 611.7 616 58.0
HanXRQChr17g0569531 Helianthus annuus HOM05D006816 ORTHO05D008666 1.1e-172 610.9 532 63.0
Oeu057544.1 Olea europaea HOM05D006816 ORTHO05D008666 1.4e-172 610.5 635 56.7
Sopen05g008580 Solanum pennellii HOM05D006816 ORTHO05D008666 1.8e-172 610.1 616 57.1
VMungo0251G0196 Vigna mungo HOM05D006816 ORTHO05D008666 1.2e-171 607.4 542 63.1
Nitab4.5_0006963g0030 Nicotiana tabacum HOM05D006816 ORTHO05D008666 2.6e-171 606.3 550 61.6
FvH4_4g25720 Fragaria vesca HOM05D006816 ORTHO05D008666 7.6e-171 604.7 610 57.5
Lalb_Chr07g0185401 Lupinus albus HOM05D006816 ORTHO05D008666 9.9e-171 604.4 545 62.6
ECA234G3219 Erigeron canadensis HOM05D006816 ORTHO05D008666 1.3e-170 604.0 525 62.3
PSO063G6228 Papaver somniferum HOM05D006816 ORTHO05D008666 2.2e-170 603.2 558 60.4
PGSC0003DMG400018598 Solanum tuberosum HOM05D006816 ORTHO05D008666 2.9e-170 602.8 619 56.5
Phvul.002G259600 Phaseolus vulgaris HOM05D006816 ORTHO05D008666 4.9e-170 602.1 542 61.6
Lsat_1_v5_gn_4_4020 Lactuca sativa HOM05D006816 ORTHO05D008666 1.1e-169 600.9 534 62.4
PSO754G0080 Papaver somniferum HOM05D006816 ORTHO05D008666 1.1e-169 600.9 558 60.4
SalBow2G0630 Salvia bowleyana HOM05D006816 ORTHO05D008666 1.4e-169 600.5 563 59.3
Migut.K00611 Erythranthe guttata HOM05D006816 ORTHO05D008666 4.6e-168 595.5 543 59.9
FAN12G1622 Fragaria x ananassa HOM05D006816 ORTHO05D008666 6.0e-168 595.1 537 62.4
ClCG05G025840 Citrullus lanatus HOM05D006816 ORTHO05D008666 1.1e-166 590.9 569 59.1
Sabra10G0021100 Salix brachista HOM05D006816 ORTHO05D008666 3.3e-166 589.3 636 56.6
Aqoxy5G03738 Aquilegia oxysepala HOM05D006816 ORTHO05D008666 7.3e-166 588.2 522 63.0
TPR.G6183 Trifolium pratense HOM05D006816 ORTHO05D008666 7.3e-166 588.2 618 55.7
Medtr8g089810 Medicago truncatula HOM05D006816 ORTHO05D008666 1.6e-165 587.0 544 58.8
Nn4g22582 Nelumbo nucifera HOM05D006816 ORTHO05D008666 2.1e-165 586.6 648 55.2
Ca_17778_v3 Cicer arietinum L. HOM05D006816 ORTHO05D008666 1.4e-164 583.9 546 60.6
RcHm_v2.0_Chr4g0433151 Rosa chinensis HOM05D006816 ORTHO05D008666 6.9e-164 581.6 557 59.1
AUR62005487 Chenopodium quinoa HOM05D006816 ORTHO05D008666 1.5e-163 580.5 634 54.3
Lj4g0008868 Lotus japonicus HOM05D006816 ORTHO05D008666 4.5e-163 578.9 610 57.7
PGR119G0117 Punica granatum HOM05D006816 ORTHO05D008666 4.5e-163 578.9 630 55.4
CANSAT01G2021 Cannabis sativa HOM05D006816 ORTHO05D008666 3.8e-162 575.9 611 57.3
Cc11_g15850 Coffea canephora HOM05D006816 ORTHO05D008666 6.4e-162 575.1 538 61.2
Psat7g059360 Pisum sativum HOM05D006816 ORTHO05D008666 1.1e-161 574.3 541 58.8
CSS0008455 Camellia sinensis var. sinensis HOM05D006816 ORTHO05D008666 4.2e-161 572.4 537 59.6
Peaxi162Scf00128g00318 Petunia axillaris HOM05D006816 ORTHO05D008666 5.1e-159 565.5 553 57.5
unitig_699.g19932 Utricularia gibba HOM05D006816 ORTHO05D008666 1.5e-155 553.9 566 56.5
vmacro01121 Vaccinium macrocarpon HOM05D006816 ORTHO05D008666 2.9e-154 549.7 642 53.9
Duzib251G0886 Durio zibethinus HOM05D006816 ORTHO05D008666 5.5e-153 545.4 545 57.2
ATR0824G245 Amborella trichopoda HOM05D006816 ORTHO05D008666 6.2e-149 531.9 575 53.6
Zm00001eb319330 Zea mays HOM05D006816 ORTHO05D008666 2.2e-146 523.5 586 52.4
Actinidia01356 Actinidia chinensis HOM05D006816 ORTHO05D008666 4.5e-139 499.2 546 56.0
CAN.G436.5 Capsicum annuum HOM05D006816 ORTHO05D008666 1.3e-138 497.7 461 60.1
Nitab4.5_0000524g0100 Nicotiana tabacum HOM05D006816 ORTHO05D008666 8.8e-135 485.0 482 57.9
Sc11g0000930 Simmondsia chinensis HOM05D006816 ORTHO05D008666 6.9e-132 475.3 473 58.1
DCAR_031163 Daucus carota HOM05D006816 ORTHO05D008666 2.8e-125 453.4 549 50.6
SEGI_18687 Sequoiadendron giganteum HOM05D006816 ORTHO05D008666 3.1e-116 423.3 547 45.7
Thecc.02G261900 Theobroma cacao HOM05D006816 ORTHO05D008666 2.0e-115 420.6 467 55.5
SGA_v2.0_scaffold100G29566 Striga asiatica HOM05D006816 ORTHO05D008666 3.0e-111 406.8 594 43.8
Potri.010G047500 Populus trichocarpa HOM05D006816 ORTHO05D008666 1.8e-103 380.9 372 59.4
FAN07G2231 Fragaria x ananassa HOM05D006816 ORTHO05D008666 2.3e-103 380.6 455 53.0
CiPaw.05G180700 Carya illinoinensis HOM05D006816 ORTHO05D008666 5.2e-103 379.4 407 58.2
HPP92_023364 Vanilla planifolia HOM05D006816 ORTHO05D008666 1.4e-100 371.3 316 62.0
arahy.Tifrunner.gnm1.ann1.2HFS1Z Arachis hypogaea HOM05D006816 ORTHO05D008666 2.3e-98 364.0 377 58.4
arahy.Tifrunner.gnm1.ann1.CH9KSW Arachis hypogaea HOM05D006816 ORTHO05D008666 1.1e-97 361.7 377 58.1
Prupe.1G246300 Prunus persica HOM05D006816 ORTHO05D008666 2.0e-94 350.9 395 53.7
Os12g0292900 Oryza sativa ssp. japonica HOM05D006816 ORTHO05D008666 1.7e-85 321.2 371 51.8
CDE02G3152 Ceratophyllum demersum HOM05D006816 ORTHO05D008666 1.9e-84 317.8 474 44.5
Mapoly0088s0066 Marchantia polymorpha HOM05D006816 ORTHO05D008666 6.8e-71 272.7 581 35.8
MBI17_g43191_MAGBIO Magnolia biondii HOM05D006816 ORTHO05D008666 4.3e-57 226.9 246 53.3
Glyma.08G131850 Glycine max HOM05D006816 ORTHO05D008666 3.2e-52 210.7 169 68.0
Pp3c11_24610 Physcomitrium patens HOM05D006816 ORTHO05D008666 3.0e-50 204.1 557 31.2
Psat3g153160 Pisum sativum HOM05D006816 ORTHO05D008517 2.7e-35 154.5 167 50.3
Psat3g153200 Pisum sativum HOM05D006816 ORTHO05D008666 6.0e-35 153.3 154 51.9
COL.COLO4_35805 Corchorus olitorius HOM05D006816 ORTHO05D008666 2.1e-32 144.8 97 69.1
HPP92_023363 Vanilla planifolia HOM05D006816 ORTHO05D008666 9.0e-31 139.4 137 54.0
Psat2g121560 Pisum sativum HOM05D006816 ORTHO05D008666 2.9e-29 134.4 138 51.4
Psat4g077560 Pisum sativum HOM05D006816 ORTHO05D008666 4.2e-28 130.6 95 67.4
CBR_g52389 Chara braunii HOM05D006816 ORTHO05D008666 2.7e-27 127.9 331 27.5
CDE09G0157 Ceratophyllum demersum HOM05D006816 ORTHO05D008666 1.5e-25 122.1 161 46.0
Actinidia08129 Actinidia chinensis HOM05D006816 ORTHO05D008666 4.6e-19 100.5 119 48.7
Actinidia01355 Actinidia chinensis HOM05D006816 ORTHO05D008666 3.0e-18 97.8 59 78.0
FvH4_4g35670 Fragaria vesca HOM05D006816 ORTHO05D008666 3.4e-14 84.3 85 57.6
CBR_g52391 Chara braunii HOM05D006816 ORTHO05D008666 1.7e-13 82.0 191 32.5
FAN22G1065 Fragaria x ananassa HOM05D000247 ORTHO05D000288 9.4e-12 76.3 85 51.8


User provided reference genes

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