Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G26300 Arabidopsis lyrata HOM05D005422 ORTHO05D006578 0.0e+00 1237.6 620 100.0
AT1G67630 Arabidopsis thaliana HOM05D005422 ORTHO05D006578 0.0e+00 1178.3 621 94.7
Carub.0002s1397 Capsella rubella HOM05D005422 ORTHO05D006578 0.0e+00 1155.6 621 91.9
CARHR060210 Cardamine hirsuta HOM05D005422 ORTHO05D006578 0.0e+00 1113.2 622 88.7
Sp5g22630 Schrenkiella parvula HOM05D005422 ORTHO05D006578 0.0e+00 1108.6 623 88.1
Thhalv10018287m.g Eutrema salsugineum HOM05D005422 ORTHO05D006578 0.0e+00 1094.7 624 87.0
BcaB05g24303 Brassica carinata HOM05D005422 ORTHO05D006578 5.1e-311 1070.5 623 84.9
C02p23270 Brassica napus HOM05D005422 ORTHO05D006578 7.1e-310 1066.6 623 84.9
BcaC03g14856 Brassica carinata HOM05D005422 ORTHO05D006578 9.3e-310 1066.2 623 84.9
BolC2t08466H Brassica oleracea HOM05D005422 ORTHO05D006578 2.3e-308 1061.6 623 84.8
BraA02t06501Z Brassica rapa HOM05D005422 ORTHO05D006578 6.3e-306 1053.5 623 83.8
A02p14390 Brassica napus HOM05D005422 ORTHO05D006578 3.1e-305 1051.2 623 83.9
Aa31LG4G12020 Aethionema arabicum HOM05D005422 ORTHO05D006578 4.0e-276 954.5 685 71.7
THA.LOC104807895 Tarenaya hassleriana HOM05D005422 ORTHO05D006578 2.4e-273 945.3 623 75.0
Cpa.g.sc43.8 Carica papaya HOM05D005422 ORTHO05D006578 6.0e-240 834.3 621 66.2
QL03p054803 Quercus lobata HOM05D005422 ORTHO05D006578 3.6e-237 825.1 623 65.7
Ciclev10030973m.g Citrus clementina HOM05D005422 ORTHO05D006578 3.4e-235 818.5 623 65.3
Potri.010G055900 Populus trichocarpa HOM05D005422 ORTHO05D006578 3.4e-235 818.5 620 65.0
Manes.12G015200 Manihot esculenta HOM05D005422 ORTHO05D006578 1.3e-234 816.6 621 64.4
Cfa009312 Carpinus fangiana HOM05D005422 ORTHO05D006578 1.0e-231 807.0 627 65.4
CiPaw.06G099500 Carya illinoinensis HOM05D005422 ORTHO05D006578 3.0e-231 805.4 623 63.6
Thecc.02G273900 Theobroma cacao HOM05D005422 ORTHO05D006578 3.1e-228 795.4 624 63.1
GSVIVG01010354001 Vitis vinifera HOM05D005422 ORTHO05D006578 5.8e-227 791.2 625 63.0
Eucgr.B03458 Eucalyptus grandis HOM05D005422 ORTHO05D006578 4.9e-226 788.1 625 63.2
Sabra10G0049200 Salix brachista HOM05D005422 ORTHO05D006578 1.4e-225 786.6 620 63.2
PGR102G2427 Punica granatum HOM05D005422 ORTHO05D006578 2.1e-224 782.7 624 63.3
RcHm_v2.0_Chr4g0431221 Rosa chinensis HOM05D005422 ORTHO05D006578 3.0e-223 778.9 625 62.7
TAR374G0226 Trochodendron aralioides HOM05D005422 ORTHO05D006578 3.6e-221 771.9 625 62.4
MD13G1111800 Malus domestica HOM05D005422 ORTHO05D006578 3.1e-220 768.8 621 62.5
Sed0011369 Sechium edule HOM05D005422 ORTHO05D006578 2.0e-219 766.1 627 62.0
CSS0029300 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 5.8e-219 764.6 622 62.4
FvH4_4g24380 Fragaria vesca HOM05D005422 ORTHO05D006578 5.8e-219 764.6 602 63.3
CSS0043806 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 8.4e-218 760.8 622 62.2
Atru.chr11.2241 Acer truncatum HOM05D005422 ORTHO05D006578 1.2e-216 756.9 629 62.2
Atru.chr11.2256 Acer truncatum HOM05D005422 ORTHO05D006578 2.1e-216 756.1 629 62.3
Nn3g16548 Nelumbo nucifera HOM05D005422 ORTHO05D006578 1.1e-214 750.4 631 60.4
MELO3C002044.2 Cucumis melo HOM05D005422 ORTHO05D006578 4.3e-214 748.4 624 61.4
Sc11g0000670 Simmondsia chinensis HOM05D005422 ORTHO05D006578 4.3e-214 748.4 622 60.8
Gorai.009G333700 Gossypium raimondii HOM05D005422 ORTHO05D006578 1.3e-213 746.9 625 60.6
CsaV3_1G006150 Cucumis sativus L. HOM05D005422 ORTHO05D006578 1.6e-213 746.5 627 60.9
Haze_12366 Corylus avellana HOM05D005422 ORTHO05D006578 3.6e-213 745.3 627 61.6
Gohir.D05G312350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 4.8e-213 745.0 625 60.5
Ca_16485_v3 Cicer arietinum L. HOM05D005422 ORTHO05D006578 1.1e-212 743.8 625 60.5
Prupe.1G233700 Prunus persica HOM05D005422 ORTHO05D006578 1.8e-212 743.0 625 61.1
FAN22G2139 Fragaria x ananassa HOM05D005422 ORTHO05D000550 3.1e-212 742.3 624 61.2
arahy.Tifrunner.gnm1.ann1.FGLE2H Arachis hypogaea HOM05D005422 ORTHO05D006578 6.9e-212 741.1 623 59.2
Phvul.001G259300 Phaseolus vulgaris HOM05D005422 ORTHO05D006578 2.0e-211 739.6 628 59.7
Medtr3g085750 Medicago truncatula HOM05D005422 ORTHO05D006578 2.6e-211 739.2 626 60.4
arahy.Tifrunner.gnm1.ann1.3L5TD6 Arachis hypogaea HOM05D005422 ORTHO05D006578 3.4e-211 738.8 623 59.1
Psat5g094440 Pisum sativum HOM05D005422 ORTHO05D006578 7.6e-211 737.6 624 59.3
Aqoxy5G03525 Aquilegia oxysepala HOM05D005422 ORTHO05D006578 1.7e-210 736.5 627 59.3
Lj6g0021706 Lotus japonicus HOM05D005422 ORTHO05D006578 2.9e-210 735.7 625 59.8
TPR.G22445 Trifolium pratense HOM05D005422 ORTHO05D006578 6.4e-210 734.6 624 59.8
COL.COLO4_23617 Corchorus olitorius HOM05D005422 ORTHO05D006578 1.2e-208 730.3 624 59.6
FAN07G0746 Fragaria x ananassa HOM05D005422 ORTHO05D000550 1.0e-207 727.2 622 60.1
PSO782G4908 Papaver somniferum HOM05D005422 ORTHO05D006578 2.3e-207 726.1 625 57.9
Duzib268G1013 Durio zibethinus HOM05D005422 ORTHO05D006578 5.1e-207 724.9 624 58.5
Lalb_Chr04g0262801 Lupinus albus HOM05D005422 ORTHO05D006578 4.3e-206 721.8 624 58.3
PSO063G3748 Papaver somniferum HOM05D005422 ORTHO05D006578 4.3e-206 721.8 626 58.0
Hund25438 Selenicereus undatus HOM05D005422 ORTHO05D006578 1.3e-205 720.3 655 57.1
VMungo1383G2526 Vigna mungo HOM05D005422 ORTHO05D006578 3.1e-204 715.7 626 59.1
Glyma.18G009300 Glycine max HOM05D005422 ORTHO05D006578 5.3e-204 714.9 622 59.5
Oeu056686.1 Olea europaea HOM05D005422 ORTHO05D006578 1.5e-203 713.4 625 57.6
Actinidia33261 Actinidia chinensis HOM05D005422 ORTHO05D006578 2.2e-202 709.5 622 58.8
Sopen05g009590 Solanum pennellii HOM05D005422 ORTHO05D006578 2.2e-202 709.5 626 57.7
PGSC0003DMG400017439 Solanum tuberosum HOM05D005422 ORTHO05D006578 6.5e-202 708.0 624 57.7
Dinv14796 Davidia involucrata HOM05D005422 ORTHO05D006578 4.2e-201 705.3 635 57.3
Solyc05g014540.3 Solanum lycopersicum HOM05D005422 ORTHO05D006578 4.2e-201 705.3 624 57.5
Lj6g0001538 Lotus japonicus HOM05D005422 ORTHO05D006578 5.5e-201 704.9 626 58.0
FAN17G0355 Fragaria x ananassa HOM05D005422 ORTHO05D006578 2.7e-200 702.6 624 59.0
FAN12G3101 Fragaria x ananassa HOM05D005422 ORTHO05D006578 1.3e-199 700.3 693 54.5
EL10Ac6g13434 Beta vulgaris HOM05D005422 ORTHO05D006578 3.0e-199 699.1 633 57.0
ClCG04G011650 Citrullus lanatus HOM05D005422 ORTHO05D006578 1.3e-197 693.7 618 58.4
Lj6C821T7 Lonicera japonica HOM05D005422 ORTHO05D006578 2.4e-196 689.5 622 57.1
AUR62005568 Chenopodium quinoa HOM05D005422 ORTHO05D006578 6.9e-196 688.0 640 55.5
Peaxi162Scf00128g00843 Petunia axillaris HOM05D005422 ORTHO05D006578 6.9e-196 688.0 623 56.2
MSTRG.7977 Avicennia marina HOM05D005422 ORTHO05D006578 3.4e-195 685.6 620 56.1
Migut.K00694 Erythranthe guttata HOM05D005422 ORTHO05D006578 8.4e-194 681.0 621 56.5
MD16G1111400 Malus domestica HOM05D005422 ORTHO05D006578 2.5e-193 679.5 575 61.7
AUR62024162 Chenopodium quinoa HOM05D005422 ORTHO05D006578 3.9e-191 672.2 622 55.5
CAN.G163.4 Capsicum annuum HOM05D005422 ORTHO05D006578 7.4e-190 667.9 621 55.7
Hma1.2p1_1340F.1_g276720 Hydrangea macrophylla HOM05D005422 ORTHO05D006578 9.7e-190 667.5 620 56.3
ECA246G0814 Erigeron canadensis HOM05D005422 ORTHO05D006578 4.8e-189 665.2 625 55.2
Cc11_g16560 Coffea canephora HOM05D005422 ORTHO05D006578 6.3e-189 664.8 625 55.4
HanXRQChr06g0174981 Helianthus annuus HOM05D005422 ORTHO05D006578 2.0e-187 659.8 620 54.4
Duzib251G0558 Durio zibethinus HOM05D005422 ORTHO05D006578 2.9e-186 656.0 622 54.3
Nitab4.5_0000240g0030 Nicotiana tabacum HOM05D005422 ORTHO05D006578 5.0e-186 655.2 621 54.1
CANSAT01G0865 Cannabis sativa HOM05D005422 ORTHO05D006578 7.2e-185 651.4 529 60.7
Lsat_1_v5_gn_3_29520 Lactuca sativa HOM05D005422 ORTHO05D006578 1.8e-183 646.7 622 54.5
ATR0743G050 Amborella trichopoda HOM05D005422 ORTHO05D006578 2.3e-183 646.4 635 52.3
MBI18_g30536_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 2.5e-182 642.9 663 51.1
DCAR_024084 Daucus carota HOM05D005422 ORTHO05D006578 3.3e-182 642.5 588 56.6
Rhsim12G0105700 Rhododendron simsii HOM05D005422 ORTHO05D006578 1.7e-178 630.2 657 53.6
vmacro16136 Vaccinium macrocarpon HOM05D005422 ORTHO05D006578 5.1e-175 618.6 528 61.0
Gohir.A05G311350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 5.7e-174 615.1 625 52.8
SGA_v2.0_scaffold46G17410 Striga asiatica HOM05D005422 ORTHO05D006578 1.3e-173 614.0 621 52.2
SEGI_16764 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 1.3e-162 577.4 640 48.0
SEGI_31313 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 1.3e-162 577.4 640 48.0
SEGI_15215 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 1.1e-161 574.3 637 48.0
DCAR_013710 Daucus carota HOM05D005422 ORTHO05D006578 3.2e-161 572.8 619 49.8
Zm00001eb409930 Zea mays HOM05D005422 ORTHO05D006578 2.7e-160 569.7 625 49.0
unitig_749.g13303 Utricularia gibba HOM05D005422 ORTHO05D006578 1.1e-153 547.7 610 48.0
SHI17936 Sapria himalayana HOM05D005422 ORTHO05D006578 1.9e-153 547.0 620 49.4
Glyma.11G247900 Glycine max HOM05D005422 ORTHO05D006578 3.0e-151 539.7 488 58.4
Nitab4.5_0000581g0110 Nicotiana tabacum HOM05D005422 ORTHO05D006578 3.4e-150 536.2 619 47.7
Pp3c10_15960 Physcomitrium patens HOM05D005422 ORTHO05D006578 6.1e-144 515.4 631 43.9
Mapoly0035s0099 Marchantia polymorpha HOM05D005422 ORTHO05D006578 4.0e-143 512.7 644 44.7
CDE09G1061 Ceratophyllum demersum HOM05D005422 ORTHO05D006578 9.2e-140 501.5 528 50.0
HPP92_024300 Vanilla planifolia HOM05D005422 ORTHO05D006578 3.5e-139 499.6 624 44.9
Os12g0242900 Oryza sativa ssp. japonica HOM05D005422 ORTHO05D006578 5.6e-129 465.7 405 57.0
HPP92_024298 Vanilla planifolia HOM05D005422 ORTHO05D006578 2.4e-124 450.3 385 56.6
SMO164G0100 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 6.8e-119 432.2 582 42.1
CSS0043308 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 8.4e-117 425.2 406 55.9
CSS0016009 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 2.8e-112 410.2 409 53.3
AagrBONN_evm.TU.Sc2ySwM_228.1647 Anthoceros agrestis HOM05D005422 ORTHO05D006578 8.9e-111 405.2 474 46.4
CBR_g26038 Chara braunii HOM05D005422 ORTHO05D006578 1.4e-79 301.6 762 30.4
CARHR058070 Cardamine hirsuta HOM05D005422 ORTHO05D006578 1.3e-72 278.5 164 85.4
PRCOL_00001924 Prasinoderma coloniale HOM05D005422 ORTHO05D006578 4.2e-68 263.5 633 31.9
MCO02G188 Micromonas commoda HOM05D005422 ORTHO05D006578 3.9e-66 256.9 681 31.4
SMO076G0002 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 1.5e-57 228.4 244 48.8
unitig_35.g30205 Utricularia gibba HOM05D005422 ORTHO05D006578 5.0e-53 213.4 271 43.9
arahy.Tifrunner.gnm1.ann1.T7I6MJ Arachis hypogaea HOM05D005422 ORTHO05D006578 2.5e-52 211.1 216 49.1
Cre01.g017450 Chlamydomonas reinhardtii HOM05D005422 ORTHO05D006578 3.6e-51 207.2 387 34.4
CSS0044941 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 7.5e-49 199.5 130 70.0
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 2.6e-41 174.5 645 26.5
C02p23310 Brassica napus HOM05D005422 ORTHO05D006578 7.0e-39 166.4 111 75.7
arahy.Tifrunner.gnm1.ann1.PQ2R0I Arachis hypogaea HOM05D005422 ORTHO05D006578 3.5e-38 164.1 143 58.7
Lsat_1_v5_gn_5_63620 Lactuca sativa HOM05D005422 ORTHO05D006040 2.6e-33 147.9 155 48.4
Lsat_1_v5_gn_8_120961 Lactuca sativa HOM05D005422 ORTHO05D006578 9.5e-28 129.4 144 47.9
FvH4_4g24360 Fragaria vesca HOM05D005422 ORTHO05D006578 1.0e-26 125.9 98 66.3
arahy.Tifrunner.gnm1.ann1.IS07F8 Arachis hypogaea HOM05D005422 ORTHO05D006578 1.4e-26 125.6 95 61.1
HPP92_024297 Vanilla planifolia HOM05D005422 ORTHO05D006578 1.8e-26 125.2 106 55.7
Potri.008G178951 Populus trichocarpa HOM05D005422 ORTHO05D006578 1.0e-21 109.4 124 50.0
Lsat_1_v5_gn_5_146881 Lactuca sativa HOM05D005422 ORTHO05D019256 2.3e-21 108.2 172 37.2
BcaC03g14863 Brassica carinata HOM05D000026 ORTHO05D000094 1.2e-19 102.4 178 39.3
unitig_35.g30204 Utricularia gibba HOM05D005422 ORTHO05D006578 1.0e-18 99.4 125 42.4
Sabra08G0136500 Salix brachista HOM05D005422 ORTHO05D006578 5.4e-15 87.0 73 53.4
Lsat_1_v5_gn_2_95100 Lactuca sativa HOM05D005290 ORTHO05D006040 1.2e-14 85.9 163 34.4
arahy.Tifrunner.gnm1.ann1.SR9TX3 Arachis hypogaea HOM05D005422 ORTHO05D001437 7.8e-14 83.2 82 54.9
Lsat_1_v5_gn_7_52961 Lactuca sativa HOM05D001824 ORTHO05D006578 4.3e-12 77.4 66 56.1
Rhsim03G0100700 Rhododendron simsii HOM05D005422 ORTHO05D006578 9.5e-12 76.3 228 27.6
Lsat_1_v5_gn_3_78701 Lactuca sativa HOM05D005422 ORTHO05D006578 2.1e-11 75.1 69 55.1
AL1G40980 Arabidopsis lyrata HOM05D002438 ORTHO05D002617 1.1e-10 72.8 43 83.7
Lsat_1_v5_gn_6_18500 Lactuca sativa HOM05D001824 ORTHO05D006578 2.3e-10 71.6 84 47.6
VMungo1215G3139 Vigna mungo HOM05D003635 ORTHO05D004283 1.2e-09 69.3 54 61.1
SHI54583 Sapria himalayana HOM05D005422 ORTHO05D006578 4.4e-09 67.4 52 61.5
MBI10_g35396_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 2.9e-08 64.7 43 62.8
arahy.Tifrunner.gnm1.ann1.L1WA2E Arachis hypogaea HOM05D001562 ORTHO05D001437 1.9e-07 62.0 66 50.0
arahy.Tifrunner.gnm1.ann1.E05V9C Arachis hypogaea HOM05D000386 ORTHO05D083937 6.0e-06 57.0 134 36.6
Cfa005156 Carpinus fangiana HOM05D000011 ORTHO05D000157 6.0e-06 57.0 74 47.3


User provided reference genes

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