Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G26280 Arabidopsis lyrata HOM05D006725 ORTHO05D008223 8.1e-100 367.1 185 100.0
AT1G67620 Arabidopsis thaliana HOM05D006725 ORTHO05D008223 4.0e-91 338.2 188 92.6
Carub.0002s1395 Capsella rubella HOM05D006725 ORTHO05D008223 2.3e-86 322.4 187 88.2
CARHR060190 Cardamine hirsuta HOM05D006725 ORTHO05D008223 5.1e-78 294.7 182 83.0
Thhalv10019173m.g Eutrema salsugineum HOM05D006725 ORTHO05D008223 1.9e-77 292.7 196 77.0
A07p34140 Brassica napus HOM05D006725 ORTHO05D008223 5.8e-66 254.6 200 71.0
BcaB03g15182 Brassica carinata HOM05D006725 ORTHO05D008223 7.6e-66 254.2 201 70.6
BcaC08g46171 Brassica carinata HOM05D006725 ORTHO05D008223 1.3e-65 253.4 203 70.0
BraA07t31040Z Brassica rapa HOM05D006725 ORTHO05D008223 6.4e-65 251.1 191 71.2
BolC6t39176H Brassica oleracea HOM05D006725 ORTHO05D008223 1.1e-64 250.4 203 69.0
C06p42630 Brassica napus HOM05D006725 ORTHO05D008223 1.9e-64 249.6 203 69.5
BraA07t31044Z Brassica rapa HOM05D006725 ORTHO05D008223 9.6e-61 237.3 190 69.5
Aa31LG4G12010 Aethionema arabicum HOM05D006725 ORTHO05D008223 3.5e-55 218.8 173 67.6
THA.LOC104825521 Tarenaya hassleriana HOM05D006725 ORTHO05D008223 1.3e-54 216.9 196 62.8
RcHm_v2.0_Chr4g0431131 Rosa chinensis HOM05D006725 ORTHO05D008223 3.1e-51 205.7 182 58.8
PGR102G0799 Punica granatum HOM05D006725 ORTHO05D008223 1.3e-49 200.3 190 58.4
FAN12G1259 Fragaria x ananassa HOM05D006725 ORTHO05D008223 1.1e-48 197.2 198 55.1
Prupe.1G233300 Prunus persica HOM05D006725 ORTHO05D008223 1.4e-48 196.8 186 57.5
FAN22G0294 Fragaria x ananassa HOM05D006725 ORTHO05D008223 1.9e-48 196.4 198 55.1
TWI18G0344 Tripterygium wilfordii HOM05D006725 ORTHO05D008223 1.9e-48 196.4 180 60.6
CiPaw.05G115200 Carya illinoinensis HOM05D006725 ORTHO05D008223 4.2e-48 195.3 192 56.2
PSO782G3390 Papaver somniferum HOM05D006725 ORTHO05D008223 5.5e-48 194.9 185 60.0
Thecc.02G274200 Theobroma cacao HOM05D006725 ORTHO05D008223 9.3e-48 194.1 195 56.9
Dinv14799 Davidia involucrata HOM05D006725 ORTHO05D008223 1.6e-47 193.4 194 56.7
COL.COLO4_23620 Corchorus olitorius HOM05D006725 ORTHO05D008223 2.1e-47 193.0 195 55.9
MD13G1112100 Malus domestica HOM05D006725 ORTHO05D008223 2.1e-47 193.0 186 56.5
MD16G1111700 Malus domestica HOM05D006725 ORTHO05D008223 2.7e-47 192.6 186 56.5
PSO063G2169 Papaver somniferum HOM05D006725 ORTHO05D008223 2.7e-47 192.6 189 58.7
Duzib248G0208 Durio zibethinus HOM05D006725 ORTHO05D008223 6.1e-47 191.4 195 55.9
Potri.008G105700 Populus trichocarpa HOM05D006725 ORTHO05D008223 2.3e-46 189.5 184 56.0
CSS0023056 Camellia sinensis var. sinensis HOM05D006725 ORTHO05D008223 5.1e-46 188.3 192 53.6
Gorai.005G171500 Gossypium raimondii HOM05D006725 ORTHO05D008223 6.7e-46 188.0 177 58.2
TAR374G1568 Trochodendron aralioides HOM05D006725 ORTHO05D008223 6.7e-46 188.0 188 58.0
Phvul.001G259500 Phaseolus vulgaris HOM05D006725 ORTHO05D008223 1.1e-45 187.2 176 56.2
Peaxi162Scf00128g00835 Petunia axillaris HOM05D006725 ORTHO05D008223 1.5e-45 186.8 192 54.2
Gohir.D02G152500 Gossypium hirsutum HOM05D006725 ORTHO05D008223 2.5e-45 186.0 177 57.6
Aqoxy5G03519 Aquilegia oxysepala HOM05D006725 ORTHO05D008223 3.3e-45 185.7 188 53.2
Solyc05g014650.2 Solanum lycopersicum HOM05D006725 ORTHO05D008223 3.3e-45 185.7 194 54.6
Atru.chr11.2245 Acer truncatum HOM05D006725 ORTHO05D008223 5.7e-45 184.9 187 58.3
Sopen05g009780 Solanum pennellii HOM05D006725 ORTHO05D008223 5.7e-45 184.9 192 55.2
Actinidia08088 Actinidia chinensis HOM05D006725 ORTHO05D008223 7.4e-45 184.5 196 53.1
CANSAT56G1091 Cannabis sativa HOM05D006725 ORTHO05D008223 7.4e-45 184.5 178 58.4
Ca_16483_v3 Cicer arietinum L. HOM05D006725 ORTHO05D008223 7.4e-45 184.5 188 55.3
Atru.chr11.2260 Acer truncatum HOM05D006725 ORTHO05D008223 9.7e-45 184.1 187 58.3
Cfa009314 Carpinus fangiana HOM05D006725 ORTHO05D008223 1.3e-44 183.7 191 54.5
Gohir.A03G128700 Gossypium hirsutum HOM05D006725 ORTHO05D008223 2.2e-44 183.0 169 56.2
ClCG08G017310 Citrullus lanatus HOM05D006725 ORTHO05D008223 6.3e-44 181.4 191 55.0
Ciclev10032688m.g Citrus clementina HOM05D006725 ORTHO05D008223 4.1e-43 178.7 190 54.7
CsaV3_2G025320 Cucumis sativus L. HOM05D006725 ORTHO05D008223 5.3e-43 178.3 187 54.5
QL03p054759 Quercus lobata HOM05D006725 ORTHO05D008223 6.9e-43 177.9 189 52.9
Sed0015494 Sechium edule HOM05D006725 ORTHO05D008223 1.2e-42 177.2 188 53.7
Glyma.11G248100 Glycine max HOM05D006725 ORTHO05D008223 2.0e-42 176.4 183 55.2
Haze_12368 Corylus avellana HOM05D006725 ORTHO05D008223 2.6e-42 176.0 224 46.9
vmacro01086 Vaccinium macrocarpon HOM05D006725 ORTHO05D008223 3.4e-42 175.6 170 54.7
arahy.Tifrunner.gnm1.ann1.245RAI Arachis hypogaea HOM05D006725 ORTHO05D008223 4.5e-42 175.3 188 54.8
Nn4g22406 Nelumbo nucifera HOM05D006725 ORTHO05D008223 5.9e-42 174.9 183 55.2
TPR.G22435 Trifolium pratense HOM05D006725 ORTHO05D008223 5.9e-42 174.9 199 54.3
Lj3g0011418 Lotus japonicus HOM05D006725 ORTHO05D008223 7.7e-42 174.5 193 53.9
Medtr3g085720 Medicago truncatula HOM05D006725 ORTHO05D008223 1.3e-41 173.7 184 54.3
HPP92_021374 Vanilla planifolia HOM05D006725 ORTHO05D008223 5.0e-41 171.8 153 57.5
Manes.13G015700 Manihot esculenta HOM05D006725 ORTHO05D008223 1.1e-40 170.6 153 56.9
Glyma.18G009100 Glycine max HOM05D006725 ORTHO05D008223 1.4e-40 170.2 138 62.3
HanXRQChr17g0569291 Helianthus annuus HOM05D006725 ORTHO05D008223 7.2e-40 167.9 186 52.7
Rhsim12G0035000 Rhododendron simsii HOM05D006725 ORTHO05D008223 7.2e-40 167.9 224 46.9
SalBow2G1482 Salvia bowleyana HOM05D006725 ORTHO05D008223 1.6e-39 166.8 205 49.3
EL10Ac6g13437 Beta vulgaris HOM05D006725 ORTHO05D008223 2.7e-39 166.0 186 50.5
Lsat_1_v5_gn_4_2821 Lactuca sativa HOM05D006725 ORTHO05D008223 7.9e-39 164.5 192 51.6
Lalb_Chr11g0075681 Lupinus albus HOM05D006725 ORTHO05D008223 1.0e-38 164.1 187 50.8
DCAR_007015 Daucus carota HOM05D006725 ORTHO05D008223 1.8e-38 163.3 194 46.9
unitig_749.g13304 Utricularia gibba HOM05D006725 ORTHO05D008223 5.1e-38 161.8 137 60.6
Eucgr.B03461 Eucalyptus grandis HOM05D006725 ORTHO05D008223 1.1e-37 160.6 194 48.5
Nitab4.5_0000581g0080 Nicotiana tabacum HOM05D006725 ORTHO05D008223 1.5e-37 160.2 182 51.1
arahy.Tifrunner.gnm1.ann1.ZVR9LL Arachis hypogaea HOM05D006725 ORTHO05D008223 2.6e-37 159.5 175 52.6
Aqoxy5G03514 Aquilegia oxysepala HOM05D006725 ORTHO05D008223 3.3e-37 159.1 169 52.1
Migut.K00702 Erythranthe guttata HOM05D006725 ORTHO05D008223 3.3e-37 159.1 145 55.2
Hund06064 Selenicereus undatus HOM05D006725 ORTHO05D008223 8.2e-36 154.5 179 50.8
SGA_v2.0_scaffold46G17392 Striga asiatica HOM05D006725 ORTHO05D008223 1.5e-34 150.2 207 44.9
Sabra08G0079700 Salix brachista HOM05D006725 ORTHO05D008223 2.0e-34 149.8 193 48.7
Psat5g094640 Pisum sativum HOM05D006725 ORTHO05D008223 5.9e-34 148.3 157 52.9
Lj3A1064T102 Lonicera japonica HOM05D006725 ORTHO05D008223 1.3e-33 147.1 183 48.1
AUR62005570 Chenopodium quinoa HOM05D006725 ORTHO05D008223 2.9e-33 146.0 220 42.7
ATR0609G130 Amborella trichopoda HOM05D006725 ORTHO05D008223 3.8e-33 145.6 178 44.4
GSVIVG01010346001 Vitis vinifera HOM05D006725 ORTHO05D008223 1.1e-32 144.1 101 65.3
Zm00001eb133570 Zea mays HOM05D006725 ORTHO05D008223 2.5e-32 142.9 187 47.1
CDE09G0294 Ceratophyllum demersum HOM05D006725 ORTHO05D008223 4.7e-31 138.7 105 61.9
Os12g0241100 Oryza sativa ssp. japonica HOM05D006725 ORTHO05D008223 7.9e-31 137.9 188 44.7
Sc04g0004650 Simmondsia chinensis HOM05D006725 ORTHO05D008223 1.5e-29 133.7 117 56.4
MELO3C010728.2 Cucumis melo HOM05D006725 ORTHO05D008223 1.9e-24 116.7 133 51.1
FvH4_4g24330 Fragaria vesca HOM05D006725 ORTHO05D008223 7.5e-21 104.8 99 54.5
Nitab4.5_0000240g0060 Nicotiana tabacum HOM05D006725 ORTHO05D008223 7.5e-21 104.8 85 61.2
arahy.Tifrunner.gnm1.ann1.GPZA99 Arachis hypogaea HOM05D006725 ORTHO05D008223 9.7e-21 104.4 138 47.1
VMungo1383G0611 Vigna mungo HOM05D006725 ORTHO05D008223 3.7e-20 102.4 159 42.8
SalBow3G4645 Salvia bowleyana HOM05D006725 ORTHO05D008223 6.3e-20 101.7 81 61.7
Cc11_g16590 Coffea canephora HOM05D006725 ORTHO05D008223 1.1e-19 100.9 83 60.2
ECA234G0356 Erigeron canadensis HOM05D006725 ORTHO05D008223 4.1e-19 99.0 113 51.3
AUR62024160 Chenopodium quinoa HOM05D006725 ORTHO05D008223 1.2e-18 97.4 145 39.3
CDE02G2623 Ceratophyllum demersum HOM05D006725 ORTHO05D008223 4.5e-18 95.5 98 52.0
Cpa.g.sc351.2 Carica papaya HOM05D006725 ORTHO05D008223 5.9e-18 95.1 183 37.2
CAN.G1081.11 Capsicum annuum HOM05D006725 ORTHO05D008223 8.5e-17 91.3 100 54.0
CAN.G3094.2 Capsicum annuum HOM05D006725 ORTHO05D008223 8.5e-17 91.3 100 54.0
RcHm_v2.0_Chr7g0198741 Rosa chinensis HOM05D006725 ORTHO05D008223 1.9e-16 90.1 76 57.9
Actinidia30676 Actinidia chinensis HOM05D006725 ORTHO05D008223 2.5e-16 89.7 99 49.5
Pp3c8_14070 Physcomitrium patens HOM05D006725 ORTHO05D008223 5.5e-16 88.6 106 42.5
SpUn0282_0010 Schrenkiella parvula HOM05D006725 ORTHO05D008223 2.1e-15 86.7 55 80.0
SalBow1G8122 Salvia bowleyana HOM05D004872 ORTHO05D006050 4.7e-15 85.5 73 57.5
CBR_g17596 Chara braunii HOM05D006725 ORTHO05D008223 1.0e-14 84.3 111 38.7
RcHm_v2.0_Chr1g0343341 Rosa chinensis HOM05D006725 ORTHO05D008223 1.4e-14 84.0 71 57.7
SMO141G0262 Selaginella moellendorffii HOM05D006725 ORTHO05D008223 3.0e-14 82.8 105 37.1
Oeu041686.1 Olea europaea HOM05D006725 ORTHO05D008223 8.8e-14 81.3 101 49.5
CAN.G1081.12 Capsicum annuum HOM05D006725 ORTHO05D008223 2.0e-13 80.1 83 49.4
CAN.G3094.1 Capsicum annuum HOM05D006725 ORTHO05D008223 2.0e-13 80.1 83 49.4
Atru.chr7.1050 Acer truncatum HOM05D006725 ORTHO05D008223 1.3e-12 77.4 69 60.9
MBI08_g41741_MAGBIO Magnolia biondii HOM05D006725 ORTHO05D008223 1.3e-12 77.4 64 59.4
MBI08_g41742_MAGBIO Magnolia biondii HOM05D006725 ORTHO05D008223 3.7e-12 75.9 88 51.1
MCO03G004 Micromonas commoda HOM05D006725 ORTHO05D008223 3.8e-09 65.9 111 30.6
Hma1.2p1_0167F.1_g073800 Hydrangea macrophylla HOM05D006725 ORTHO05D008223 2.5e-08 63.2 51 54.9
RcHm_v2.0_Chr7g0183971 Rosa chinensis HOM05D006725 ORTHO05D008223 2.8e-07 59.7 62 50.0
RcHm_v2.0_Chr1g0366581 Rosa chinensis HOM05D006725 ORTHO05D008223 4.0e-06 55.8 51 56.9
RcHm_v2.0_Chr3g0456071 Rosa chinensis HOM05D006725 ORTHO05D008223 6.8e-06 55.1 49 55.1


User provided reference genes

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