Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G25860 Arabidopsis lyrata HOM05D004124 ORTHO05D004779 5.8e-145 517.7 289 100.0
AT1G67325 Arabidopsis thaliana HOM05D004124 ORTHO05D004779 8.6e-141 503.8 289 97.6
Carub.0002s1361 Capsella rubella HOM05D004124 ORTHO05D004779 5.2e-138 494.6 289 94.8
Sp5g22270 Schrenkiella parvula HOM05D004124 ORTHO05D004779 6.0e-134 481.1 244 93.9
Thhalv10018870m.g Eutrema salsugineum HOM05D004124 ORTHO05D004779 2.5e-132 475.7 244 93.0
CARHR059820 Cardamine hirsuta HOM05D004124 ORTHO05D004779 1.8e-130 469.5 243 92.6
BcaB03g15346 Brassica carinata HOM05D004124 ORTHO05D004779 4.6e-126 454.9 245 89.8
Aa31sc584G20 Aethionema arabicum HOM05D004124 ORTHO05D004779 5.6e-124 448.0 242 88.0
THA.LOC104807133 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 2.2e-120 436.0 243 85.6
C06p38790 Brassica napus HOM05D004124 ORTHO05D004779 6.0e-118 427.9 246 86.6
BolC6t38971H Brassica oleracea HOM05D004124 ORTHO05D004779 1.5e-116 423.3 245 86.1
BraA07t30886Z Brassica rapa HOM05D004124 ORTHO05D004779 5.3e-114 414.8 249 84.3
C06p42940 Brassica napus HOM05D004124 ORTHO05D004779 2.6e-113 412.5 245 83.7
A07p32620 Brassica napus HOM05D004124 ORTHO05D004779 4.5e-113 411.8 247 84.2
THA.LOC104807526 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 8.4e-112 407.5 243 82.3
THA.LOC104825500 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 1.4e-111 406.8 243 81.9
A07p33920 Brassica napus HOM05D000660 ORTHO05D000766 2.4e-111 406.0 248 82.7
BolC6t39143H Brassica oleracea HOM05D004124 ORTHO05D004779 1.0e-109 400.6 244 82.8
BraA07t31018Z Brassica rapa HOM05D000660 ORTHO05D000766 2.3e-109 399.4 245 82.4
Manes.12G010400 Manihot esculenta HOM05D004124 ORTHO05D004779 7.6e-105 384.4 243 77.0
CANSAT01G0376 Cannabis sativa HOM05D004124 ORTHO05D004779 2.2e-104 382.9 245 75.5
Dinv10949 Davidia involucrata HOM05D004124 ORTHO05D004779 2.2e-104 382.9 243 77.4
Cc11_g16980 Coffea canephora HOM05D004124 ORTHO05D004779 1.1e-103 380.6 243 74.9
Potri.001G056000 Populus trichocarpa HOM05D004124 ORTHO05D004779 3.2e-103 379.0 245 76.7
GSVIVG01010495001 Vitis vinifera HOM05D004124 ORTHO05D004779 7.1e-103 377.9 241 75.9
COL.COLO4_20412 Corchorus olitorius HOM05D004124 ORTHO05D004779 2.1e-102 376.3 245 75.1
Gohir.A04G140100 Gossypium hirsutum HOM05D004124 ORTHO05D004779 4.6e-102 375.2 245 73.5
arahy.Tifrunner.gnm1.ann1.JS6392 Arachis hypogaea HOM05D004124 ORTHO05D004779 6.0e-102 374.8 244 75.0
VMungo1383G0738 Vigna mungo HOM05D004124 ORTHO05D004779 1.3e-101 373.6 243 74.1
Haze_12426 Corylus avellana HOM05D004124 ORTHO05D004779 1.8e-101 373.2 242 74.0
Glyma.18G005700 Glycine max HOM05D004124 ORTHO05D004779 1.8e-101 373.2 243 73.7
Glyma.11G251300 Glycine max HOM05D004124 ORTHO05D004779 3.9e-101 372.1 243 73.7
Potri.003G172500 Populus trichocarpa HOM05D004124 ORTHO05D004779 5.1e-101 371.7 239 77.0
Atru.chr11.2334 Acer truncatum HOM05D004124 ORTHO05D004779 8.7e-101 370.9 242 74.8
Phvul.001G262500 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 8.7e-101 370.9 242 73.6
arahy.Tifrunner.gnm1.ann1.B7Q2TL Arachis hypogaea HOM05D004124 ORTHO05D004779 1.1e-100 370.5 252 72.2
Gorai.012G176300 Gossypium raimondii HOM05D004124 ORTHO05D004779 1.1e-100 370.5 245 72.7
Eucgr.H04636 Eucalyptus grandis HOM05D004124 ORTHO05D004779 1.9e-100 369.8 245 74.3
PGR102G1761 Punica granatum HOM05D004124 ORTHO05D004779 1.9e-100 369.8 240 75.8
Duzib251G0523 Durio zibethinus HOM05D004124 ORTHO05D004779 2.5e-100 369.4 245 73.1
Sabra01G0040400 Salix brachista HOM05D004124 ORTHO05D004779 2.5e-100 369.4 244 74.6
CiPaw.06G103200 Carya illinoinensis HOM05D004124 ORTHO05D004779 4.3e-100 368.6 238 75.2
Gohir.D04G183300 Gossypium hirsutum HOM05D004124 ORTHO05D004779 7.4e-100 367.9 247 72.5
TWI18G0339 Tripterygium wilfordii HOM05D004124 ORTHO05D004779 7.4e-100 367.9 240 74.6
Rhsim12G0025300 Rhododendron simsii HOM05D004124 ORTHO05D004779 2.1e-99 366.3 243 74.1
QL03p052498 Quercus lobata HOM05D004124 ORTHO05D004779 8.2e-99 364.4 233 73.8
Ciclev10033913m.g Citrus clementina HOM05D004124 ORTHO05D004779 1.4e-98 363.6 265 69.1
MSTRG.8009 Avicennia marina HOM05D004124 ORTHO05D004779 2.4e-98 362.8 243 72.4
Gorai.005G166600 Gossypium raimondii HOM05D004124 ORTHO05D004779 1.2e-97 360.5 244 71.7
Prupe.1G225000 Prunus persica HOM05D004124 ORTHO05D004779 1.2e-97 360.5 224 76.3
Ca_16453_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 2.0e-97 359.8 244 71.7
MELO3C011859.2 Cucumis melo HOM05D004124 ORTHO05D004779 2.0e-97 359.8 240 72.5
CsaV3_5G030210 Cucumis sativus L. HOM05D004124 ORTHO05D004779 2.0e-97 359.8 240 72.5
RcHm_v2.0_Chr4g0430131 Rosa chinensis HOM05D004124 ORTHO05D004779 2.6e-97 359.4 243 70.8
Lalb_Chr11g0075781 Lupinus albus HOM05D004124 ORTHO05D004779 5.8e-97 358.2 243 70.8
AUR62005628 Chenopodium quinoa HOM05D004124 ORTHO05D004779 7.6e-97 357.8 245 73.1
FAN07G1336 Fragaria x ananassa HOM05D004124 ORTHO05D004779 1.0e-96 357.5 245 69.4
FAN17G0270 Fragaria x ananassa HOM05D004124 ORTHO05D004779 1.0e-96 357.5 245 69.8
Gohir.A03G125700 Gossypium hirsutum HOM05D004124 ORTHO05D004779 1.3e-96 357.1 244 71.3
CAN.G163.7 Capsicum annuum HOM05D004124 ORTHO05D004779 1.7e-96 356.7 236 72.9
FvH4_4g23660 Fragaria vesca HOM05D004124 ORTHO05D004779 2.2e-96 356.3 243 70.0
FAN12G0357 Fragaria x ananassa HOM05D004124 ORTHO05D004779 2.2e-96 356.3 243 70.0
Nitab4.5_0000861g0060 Nicotiana tabacum HOM05D004124 ORTHO05D004779 2.9e-96 355.9 242 71.5
Actinidia30642 Actinidia chinensis HOM05D004124 ORTHO05D004779 6.5e-96 354.8 243 72.0
MD16G1120200 Malus domestica HOM05D004124 ORTHO05D004779 1.1e-95 354.0 242 72.7
FAN22G1987 Fragaria x ananassa HOM05D004124 ORTHO05D004779 1.4e-95 353.6 243 69.5
Lj6g0002227 Lotus japonicus HOM05D004124 ORTHO05D004779 2.5e-95 352.8 243 72.0
Gohir.D02G148500 Gossypium hirsutum HOM05D004124 ORTHO05D004779 4.2e-95 352.1 246 70.7
PGSC0003DMG400034304 Solanum tuberosum HOM05D004124 ORTHO05D004779 7.1e-95 351.3 227 73.6
AUR62028920 Chenopodium quinoa HOM05D004124 ORTHO05D004779 9.3e-95 350.9 245 71.8
Sopen05g010890 Solanum pennellii HOM05D004124 ORTHO05D004779 1.2e-94 350.5 227 73.6
Nn5g26967 Nelumbo nucifera HOM05D004124 ORTHO05D004779 1.6e-94 350.1 243 71.6
TAR626G1310 Trochodendron aralioides HOM05D004124 ORTHO05D004779 2.1e-94 349.7 244 70.5
EL10Ac6g13513 Beta vulgaris HOM05D004124 ORTHO05D004779 7.9e-94 347.8 245 70.6
Sabra03G0126200 Salix brachista HOM05D004124 ORTHO05D004779 7.9e-94 347.8 226 74.3
Peaxi162Scf00128g01335 Petunia axillaris HOM05D004124 ORTHO05D004779 1.0e-93 347.4 240 70.4
Psat5g096680 Pisum sativum HOM05D004124 ORTHO05D004779 1.8e-93 346.7 244 69.7
Actinidia09646 Actinidia chinensis HOM05D004124 ORTHO05D004779 3.0e-93 345.9 226 73.0
MSTRG.500 Avicennia marina HOM05D004124 ORTHO05D004779 3.9e-93 345.5 245 68.6
Medtr3g085190 Medicago truncatula HOM05D004124 ORTHO05D004779 3.9e-93 345.5 243 69.1
Nn8g41237 Nelumbo nucifera HOM05D004124 ORTHO05D004779 3.9e-93 345.5 245 69.0
Solyc05g015500.4 Solanum lycopersicum HOM05D004124 ORTHO05D004779 5.1e-93 345.1 225 72.9
Duzib248G0967 Durio zibethinus HOM05D004124 ORTHO05D004779 1.3e-91 340.5 240 70.4
vmacro01057 Vaccinium macrocarpon HOM05D004124 ORTHO05D004779 1.3e-91 340.5 299 59.9
Hund25468 Selenicereus undatus HOM05D004124 ORTHO05D004779 2.8e-91 339.3 261 66.7
SGA_v2.0_scaffold391G50628 Striga asiatica HOM05D004124 ORTHO05D004779 3.7e-91 339.0 245 69.4
Actinidia08066 Actinidia chinensis HOM05D004124 ORTHO05D004779 6.3e-91 338.2 277 63.2
MBI13_g33572_MAGBIO Magnolia biondii HOM05D004124 ORTHO05D004779 6.3e-91 338.2 246 68.3
Hund06093 Selenicereus undatus HOM05D004124 ORTHO05D004779 8.2e-91 337.8 244 70.5
Migut.K00950 Erythranthe guttata HOM05D004124 ORTHO05D004779 1.1e-90 337.4 245 67.8
TAR383G0859 Trochodendron aralioides HOM05D004124 ORTHO05D004779 1.4e-90 337.0 242 68.2
TPR.G17791 Trifolium pratense HOM05D004124 ORTHO05D004779 3.1e-90 335.9 230 70.4
Lalb_Chr07g0187111 Lupinus albus HOM05D004124 ORTHO05D004779 2.6e-89 332.8 244 68.0
ECA234G0541 Erigeron canadensis HOM05D004124 ORTHO05D004779 2.9e-88 329.3 227 67.8
Sed0002251 Sechium edule HOM05D004124 ORTHO05D004779 4.2e-87 325.5 244 68.4
Lalb_Chr13g0294351 Lupinus albus HOM05D004124 ORTHO05D004779 7.2e-87 324.7 244 66.0
Lalb_Chr08g0230601 Lupinus albus HOM05D004124 ORTHO05D004779 1.2e-86 323.9 244 67.6
PSO063G2768 Papaver somniferum HOM05D004124 ORTHO05D004779 3.0e-85 319.3 250 66.0
ECA233G0726 Erigeron canadensis HOM05D004124 ORTHO05D004779 8.8e-85 317.8 243 65.8
PSO170G5699 Papaver somniferum HOM05D004124 ORTHO05D004779 8.8e-85 317.8 250 65.6
Lj6A827G48 Lonicera japonica HOM05D004124 ORTHO05D004779 3.3e-84 315.8 211 70.6
Thecc.02G206600 Theobroma cacao HOM05D004124 ORTHO05D004779 3.3e-84 315.8 213 72.8
DCAR_024098 Daucus carota HOM05D004124 ORTHO05D004779 2.2e-83 313.2 246 64.6
Aqoxy7G02609 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 2.4e-82 309.7 247 65.2
HanXRQChr12g0372641 Helianthus annuus HOM05D004124 ORTHO05D004779 2.0e-81 306.6 242 64.5
HanXRQChr17g0569011 Helianthus annuus HOM05D004124 ORTHO05D004779 5.9e-81 305.1 241 63.1
ATR0626G238 Amborella trichopoda HOM05D004124 ORTHO05D004779 1.7e-80 303.5 246 62.6
Manes.13G011200 Manihot esculenta HOM05D004124 ORTHO05D004779 4.2e-79 298.9 240 63.8
Sed0008103 Sechium edule HOM05D004124 ORTHO05D004779 9.4e-79 297.7 236 64.4
Lj3A1069T45 Lonicera japonica HOM05D004124 ORTHO05D004779 1.2e-78 297.4 222 66.7
HanXRQChr12g0361221 Helianthus annuus HOM05D004124 ORTHO05D004779 1.4e-77 293.9 242 62.8
Eucgr.B03499 Eucalyptus grandis HOM05D004124 ORTHO05D004779 3.9e-77 292.4 238 63.0
DCAR_026459 Daucus carota HOM05D004124 ORTHO05D004779 8.8e-77 291.2 227 61.7
Lsat_1_v5_gn_4_400 Lactuca sativa HOM05D004124 ORTHO05D004779 1.1e-76 290.8 251 62.5
Sc04g0010190 Simmondsia chinensis HOM05D004124 ORTHO05D004779 7.4e-76 288.1 244 62.3
Ah.03g136110 Amaranthus hybridus HOM05D004124 ORTHO05D004779 1.2e-73 280.8 229 63.8
unitig_749.g13306 Utricularia gibba HOM05D004124 ORTHO05D004779 1.4e-71 273.9 245 59.2
CiPaw.05G108900 Carya illinoinensis HOM05D004124 ORTHO05D004779 2.1e-70 270.0 197 68.0
CSS0002767 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 6.1e-70 268.5 198 67.7
CSS0020706 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 3.0e-69 266.2 186 70.4
Zm00001eb174550 Zea mays HOM05D004124 ORTHO05D004779 1.6e-65 253.8 249 55.8
Duzib268G1736 Durio zibethinus HOM05D004124 ORTHO05D004779 2.0e-65 253.4 188 67.6
ClCG11G013590 Citrullus lanatus HOM05D004124 ORTHO05D004779 3.5e-65 252.7 240 56.7
Lsat_1_v5_gn_8_147801 Lactuca sativa HOM05D004124 ORTHO05D004779 4.2e-63 245.7 247 57.1
Oeu049141.1 Olea europaea HOM05D004124 ORTHO05D004779 4.2e-63 245.7 220 58.6
Oeu006524.1 Olea europaea HOM05D004124 ORTHO05D004779 1.4e-61 240.7 202 61.4
CDE04G3109 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 5.2e-61 238.8 243 55.6
Zm00001eb035500 Zea mays HOM05D004124 ORTHO05D004779 5.2e-61 238.8 249 52.6
Nitab4.5_0003900g0010 Nicotiana tabacum HOM05D004124 ORTHO05D004779 1.5e-60 237.3 185 63.2
HPP92_015269 Vanilla planifolia HOM05D004124 ORTHO05D004779 2.8e-59 233.0 204 58.8
Os08g0521400 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 4.0e-53 212.6 251 50.2
HanXRQChr08g0221261 Helianthus annuus HOM05D004124 ORTHO05D004779 1.0e-40 171.4 131 64.9
Cpa.g.sc43.62 Carica papaya HOM05D004124 ORTHO05D004779 5.0e-40 169.1 160 53.1
Lsat_1_v5_gn_5_94821 Lactuca sativa HOM05D004124 ORTHO05D004779 2.2e-35 153.7 201 48.8
AagrBONN_evm.TU.Sc2ySwM_340.309 Anthoceros agrestis HOM05D004124 ORTHO05D004779 3.2e-34 149.8 240 40.0
Pp3c4_8110 Physcomitrium patens HOM05D004124 ORTHO05D004779 3.9e-32 142.9 247 42.1
SMO200G0023 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 1.6e-30 137.5 234 42.3
CiPaw.13G027200 Carya illinoinensis HOM05D002637 ORTHO05D008095 9.2e-26 121.7 229 38.9
arahy.Tifrunner.gnm1.ann1.FNBZ5S Arachis hypogaea HOM05D004124 ORTHO05D004779 2.1e-25 120.6 224 38.4
Mapoly0005s0267 Marchantia polymorpha HOM05D004124 ORTHO05D004779 6.0e-25 119.0 237 35.9
CiPaw.14G021000 Carya illinoinensis HOM05D004124 ORTHO05D004779 7.8e-25 118.6 227 37.9
PGR083G0898 Punica granatum HOM05D004124 ORTHO05D004779 1.3e-24 117.9 184 42.9
BcaNung07398 Brassica carinata HOM05D004124 ORTHO05D004779 5.1e-24 115.9 54 96.3
arahy.Tifrunner.gnm1.ann1.4H3LGZ Arachis hypogaea HOM05D004124 ORTHO05D004779 4.7e-22 109.4 234 36.3
Glyma.18G252600 Glycine max HOM05D004124 ORTHO05D004779 4.7e-22 109.4 229 34.9
TAR374G0532 Trochodendron aralioides HOM05D004124 ORTHO05D004779 4.7e-22 109.4 229 34.5
Lj3g0004507 Lotus japonicus HOM05D004124 ORTHO05D004779 1.4e-21 107.8 235 35.7
Nn1g00866 Nelumbo nucifera HOM05D004124 ORTHO05D004779 1.4e-21 107.8 237 35.0
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 3.1e-21 106.7 246 32.9
Ca_14066_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 8.9e-21 105.1 238 33.2
Phvul.008G046200 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 9.9e-20 101.7 235 31.9
CDE06G1866 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 2.9e-19 100.1 241 33.2
TAR375G0412 Trochodendron aralioides HOM05D004124 ORTHO05D004779 4.9e-19 99.4 232 32.8
Aqoxy3G02746 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 2.4e-18 97.1 240 33.8
CDE06G1514 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 1.6e-17 94.4 227 34.4
CBR_g53713 Chara braunii HOM05D004124 ORTHO05D004779 1.6e-17 94.4 234 35.0
PGR083G1960 Punica granatum HOM05D000500 ORTHO05D000367 4.6e-17 92.8 56 73.2
Os07g0490600 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 3.0e-16 90.1 252 30.6
Actinidia20714 Actinidia chinensis HOM05D004124 ORTHO05D004779 5.6e-15 85.9 45 82.2
Glyma.09G242400 Glycine max HOM05D004124 ORTHO05D004779 8.9e-13 78.6 168 36.9
Zm00001eb105300 Zea mays HOM05D004124 ORTHO05D004779 3.4e-12 76.6 241 29.5
HanXRQChr12g0379451 Helianthus annuus HOM05D004124 ORTHO05D004779 4.4e-12 76.3 53 64.2
Eucgr.L03169 Eucalyptus grandis HOM05D004124 ORTHO05D004779 1.9e-10 70.9 103 42.7
QL04p030562 Quercus lobata HOM05D004124 ORTHO05D000004 6.0e-09 65.9 51 52.9
PSO782G3756 Papaver somniferum HOM05D004124 ORTHO05D004779 5.1e-08 62.8 46 58.7
Psat7g021520 Pisum sativum HOM05D004124 ORTHO05D004779 6.6e-08 62.4 253 25.3
QL04p030567 Quercus lobata HOM05D004124 ORTHO05D004779 1.9e-07 60.8 57 49.1
AagrBONN_evm.TU.Sc2ySwM_368.334 Anthoceros agrestis HOM05D004124 ORTHO05D004779 2.5e-07 60.5 35 62.9
Haze_02835 Corylus avellana HOM05D004124 ORTHO05D004779 2.5e-07 60.5 80 41.2
PSO063G6881 Papaver somniferum HOM05D004124 ORTHO05D004779 2.5e-07 60.5 55 43.6
Zm00001eb321720 Zea mays HOM05D004124 ORTHO05D004779 3.3e-07 60.1 67 43.3
ATR0057G076 Amborella trichopoda HOM05D004124 ORTHO05D004779 5.6e-07 59.3 49 51.0
SMO181G0003 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 9.6e-07 58.5 32 68.8
GSVIVG01018266001 Vitis vinifera HOM05D004124 ORTHO05D004779 1.6e-06 57.8 51 47.1
VMungo1383G0643 Vigna mungo HOM05D004124 ORTHO05D004779 3.6e-06 56.6 54 46.3


User provided reference genes

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