Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G25700 Arabidopsis lyrata HOM05D001568 ORTHO05D004404 2.2e-28 128.6 85 100.0
Thhalv10019331m.g Eutrema salsugineum HOM05D001568 ORTHO05D004404 1.3e-25 119.4 85 92.9
Sp5g22130 Schrenkiella parvula HOM05D001568 ORTHO05D004404 1.3e-25 119.4 85 91.8
Carub.0002s1347 Capsella rubella HOM05D001568 ORTHO05D004404 1.8e-25 119.0 89 93.3
A07p33830 Brassica napus HOM05D001568 ORTHO05D004404 2.6e-21 105.1 85 84.7
C06p43090 Brassica napus HOM05D001568 ORTHO05D004404 2.6e-21 105.1 85 85.9
BolC6t39129H Brassica oleracea HOM05D001568 ORTHO05D004404 2.6e-21 105.1 85 83.5
BraA07t31009Z Brassica rapa HOM05D001568 ORTHO05D004404 2.6e-21 105.1 85 84.7
BolC2t08417H Brassica oleracea HOM05D001568 ORTHO05D004404 1.6e-18 95.9 85 80.0
C02p22640 Brassica napus HOM05D001568 ORTHO05D004404 2.1e-18 95.5 85 80.0
THA.LOC104822692 Tarenaya hassleriana HOM05D001568 ORTHO05D004404 2.3e-17 92.0 85 62.4
A02p14040 Brassica napus HOM05D001568 ORTHO05D004404 8.7e-17 90.1 87 78.2
BraA02t06465Z Brassica rapa HOM05D001568 ORTHO05D004404 8.7e-17 90.1 87 78.2
CARHR059650 Cardamine hirsuta HOM05D001568 ORTHO05D004404 6.3e-15 84.0 85 75.3
Aa31LG2G3570 Aethionema arabicum HOM05D001568 ORTHO05D004404 2.4e-14 82.0 80 76.2
Sed0014020 Sechium edule HOM05D001568 ORTHO05D004404 1.4e-11 72.8 79 51.9
Cc07_g04900 Coffea canephora HOM05D001568 ORTHO05D004404 1.2e-10 69.7 79 54.4
CSS0005518 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 2.7e-10 68.6 84 50.0
CSS0039733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 2.7e-10 68.6 84 50.0
Potri.017G109900 Populus trichocarpa HOM05D001568 ORTHO05D004404 4.6e-10 67.8 84 48.8
Manes.01G107200 Manihot esculenta HOM05D001568 ORTHO05D004404 6.1e-10 67.4 81 51.9
Sed0003724 Sechium edule HOM05D001568 ORTHO05D004404 7.9e-10 67.0 85 43.5
arahy.Tifrunner.gnm1.ann1.IG7GQE Arachis hypogaea HOM05D001568 ORTHO05D004404 1.4e-09 66.2 41 75.6
Lj1g0007549 Lotus japonicus HOM05D001568 ORTHO05D004404 1.8e-09 65.9 81 50.6
Oeu032864.1 Olea europaea HOM05D001568 ORTHO05D004404 1.8e-09 65.9 77 48.1
Thecc.04G144700 Theobroma cacao HOM05D001568 ORTHO05D004404 2.3e-09 65.5 86 50.0
arahy.Tifrunner.gnm1.ann1.R2NHXZ Arachis hypogaea HOM05D001568 ORTHO05D004404 3.0e-09 65.1 41 73.2
Phvul.004G048600 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 3.0e-09 65.1 81 48.1
Phvul.008G021300 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 3.9e-09 64.7 84 48.8
Glyma.19G042000 Glycine max HOM05D001568 ORTHO05D004404 5.1e-09 64.3 81 46.9
Gohir.D07G077600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 6.7e-09 63.9 81 45.7
Lalb_Chr17g0336571 Lupinus albus HOM05D001568 ORTHO05D004404 6.7e-09 63.9 81 48.1
Manes.02G064800 Manihot esculenta HOM05D001568 ORTHO05D004404 6.7e-09 63.9 41 73.2
Potri.017G109800 Populus trichocarpa HOM05D001568 ORTHO05D004404 6.7e-09 63.9 41 73.2
Sabra17G0091900 Salix brachista HOM05D001568 ORTHO05D004404 6.7e-09 63.9 81 50.6
Potri.004G105900 Populus trichocarpa HOM05D001568 ORTHO05D004404 8.8e-09 63.5 41 75.6
Gohir.A07G073000 Gossypium hirsutum HOM05D001568 ORTHO05D004404 1.1e-08 63.2 81 45.7
COL.COLO4_08509 Corchorus olitorius HOM05D001568 ORTHO05D004404 1.5e-08 62.8 80 50.0
Migut.H00549 Erythranthe guttata HOM05D001568 ORTHO05D004404 1.5e-08 62.8 81 48.1
Gorai.001G082100 Gossypium raimondii HOM05D001568 ORTHO05D004404 1.5e-08 62.8 81 45.7
Atru.chr8.777 Acer truncatum HOM05D001568 ORTHO05D004404 1.9e-08 62.4 81 43.2
Nn3g17638 Nelumbo nucifera HOM05D001568 ORTHO05D004404 1.9e-08 62.4 84 48.8
Glyma.13G049300 Glycine max HOM05D001568 ORTHO05D004404 2.5e-08 62.0 81 45.7
Eucgr.I02108 Eucalyptus grandis HOM05D001568 ORTHO05D004404 3.3e-08 61.6 84 45.2
HanXRQChr10g0283701 Helianthus annuus HOM05D001568 ORTHO05D004404 3.3e-08 61.6 85 45.9
Medtr7g019160 Medicago truncatula HOM05D001568 ORTHO05D004404 3.3e-08 61.6 81 46.9
Glyma.18G279700 Glycine max HOM05D001568 ORTHO05D004404 4.3e-08 61.2 81 45.7
Lalb_Chr10g0092401 Lupinus albus HOM05D001568 ORTHO05D004404 4.3e-08 61.2 81 49.4
Hma1.2p1_0588F.1_g184400 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 5.7e-08 60.8 41 70.7
Nn4g23635 Nelumbo nucifera HOM05D001568 ORTHO05D004404 5.7e-08 60.8 81 46.9
Prupe.3G242600 Prunus persica HOM05D001568 ORTHO05D004404 5.7e-08 60.8 41 68.3
FAN14G3562 Fragaria x ananassa HOM05D001568 ORTHO05D004404 7.4e-08 60.5 84 42.9
SalBow1G1780 Salvia bowleyana HOM05D001568 ORTHO05D004404 7.4e-08 60.5 84 41.7
SalBow1G7911 Salvia bowleyana HOM05D001568 ORTHO05D004404 7.4e-08 60.5 84 41.7
FAN05G3918 Fragaria x ananassa HOM05D001568 ORTHO05D004404 9.7e-08 60.1 84 42.9
CAN.G497.17 Capsicum annuum HOM05D001568 ORTHO05D004404 1.3e-07 59.7 81 42.0
DCAR_010979 Daucus carota HOM05D001568 ORTHO05D004404 1.3e-07 59.7 85 44.7
DCAR_010982 Daucus carota HOM05D001568 ORTHO05D004404 1.3e-07 59.7 85 44.7
Solyc02g089660.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 1.3e-07 59.7 81 42.0
PGSC0003DMG400010048 Solanum tuberosum HOM05D001568 ORTHO05D004404 1.3e-07 59.7 81 42.0
TAR622G0735 Trochodendron aralioides HOM05D000764 ORTHO05D002006 1.3e-07 59.7 41 68.3
RcHm_v2.0_Chr2g0163791 Rosa chinensis HOM05D001568 ORTHO05D004404 1.7e-07 59.3 84 42.9
TAR629G2968 Trochodendron aralioides HOM05D001568 ORTHO05D004404 1.7e-07 59.3 83 45.8
Potri.004G105800 Populus trichocarpa HOM05D001568 ORTHO05D004404 2.8e-07 58.5 40 65.0
Lsat_1_v5_gn_3_94821 Lactuca sativa HOM05D001568 ORTHO05D004404 3.7e-07 58.2 42 66.7
ECA246G2394 Erigeron canadensis HOM05D001568 ORTHO05D004404 4.8e-07 57.8 42 66.7
TPR.G3300 Trifolium pratense HOM05D001568 ORTHO05D004404 6.3e-07 57.4 84 47.6
PGSC0003DMG400019661 Solanum tuberosum HOM05D001568 ORTHO05D004404 8.2e-07 57.0 41 65.9
Medtr6g016890 Medicago truncatula HOM05D001568 ORTHO05D004404 1.1e-06 56.6 37 70.3
QL02p053549 Quercus lobata HOM05D001568 ORTHO05D004404 1.4e-06 56.2 40 65.0
FvH4_6g45650 Fragaria vesca HOM05D001568 ORTHO05D004404 3.1e-06 55.1 80 41.2
AUR62008943 Chenopodium quinoa HOM05D001568 ORTHO05D004404 4.1e-06 54.7 84 39.3
Lsat_1_v5_gn_4_175441 Lactuca sativa HOM05D001568 ORTHO05D004404 5.3e-06 54.3 42 64.3
Psat0s6663g0040 Pisum sativum HOM05D001568 ORTHO05D004404 9.1e-06 53.5 72 41.7


User provided reference genes

Program Settings