Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G25370 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 2.9e-99 365.5 229 100.0
AT1G67035 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 5.7e-87 324.7 231 85.3
Carub.0002s1332 Capsella rubella HOM05D004795 ORTHO05D005518 4.8e-78 295.0 229 80.8
CARHR059450 Cardamine hirsuta HOM05D004795 ORTHO05D005518 2.5e-66 256.1 230 75.2
Sp5g21970 Schrenkiella parvula HOM05D004795 ORTHO05D005518 2.8e-54 216.1 260 62.3
Thhalv10019032m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 4.5e-52 208.8 267 64.0
C02p22330 Brassica napus HOM05D004795 ORTHO05D005518 6.6e-51 204.9 247 65.6
BraA02t06447Z Brassica rapa HOM05D004795 ORTHO05D005518 6.1e-49 198.4 205 62.9
BolC2t08386H Brassica oleracea HOM05D004795 ORTHO05D005518 8.0e-49 198.0 246 62.6
A07p33770 Brassica napus HOM05D004795 ORTHO05D005518 1.0e-48 197.6 245 60.8
BolC6t39123H Brassica oleracea HOM05D004795 ORTHO05D005518 4.0e-48 195.7 249 60.2
C06p43160 Brassica napus HOM05D004795 ORTHO05D005518 8.9e-48 194.5 250 60.0
BraA07t31003Z Brassica rapa HOM05D004795 ORTHO05D005518 1.2e-47 194.1 246 60.2
Aa31LG2G3430 Aethionema arabicum HOM05D004795 ORTHO05D005518 1.5e-47 193.7 215 60.9
BcaC03g14785 Brassica carinata HOM05D004795 ORTHO05D005518 2.0e-47 193.4 212 62.7
BcaB05g24226 Brassica carinata HOM05D004795 ORTHO05D005518 1.4e-45 187.2 210 60.0
THA.LOC104805574 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 7.8e-44 181.4 262 53.1
Thhalv10027906m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 6.6e-43 178.3 260 59.2
BcaNung06250 Brassica carinata HOM05D004795 ORTHO05D005518 2.8e-41 172.9 211 57.8
Aa31LG9G17140 Aethionema arabicum HOM05D004795 ORTHO05D005518 3.6e-41 172.6 259 49.0
THA.LOC104822635 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 4.7e-41 172.2 263 49.8
BolC4t26077H Brassica oleracea HOM05D004795 ORTHO05D005518 1.9e-37 160.2 259 49.4
Sp7g03720 Schrenkiella parvula HOM05D004795 ORTHO05D005518 1.9e-37 160.2 256 48.0
C04p44990 Brassica napus HOM05D004795 ORTHO05D005518 5.4e-37 158.7 263 48.7
A04p11270 Brassica napus HOM05D004795 ORTHO05D005518 7.0e-37 158.3 259 49.0
BraA04t16787Z Brassica rapa HOM05D004795 ORTHO05D005518 7.0e-37 158.3 259 49.0
BcaB06g27183 Brassica carinata HOM05D004795 ORTHO05D005518 2.7e-36 156.4 253 50.6
AT5G38300 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 3.5e-36 156.0 285 49.8
BcaC02g09641 Brassica carinata HOM05D004795 ORTHO05D005518 1.9e-34 150.2 250 48.8
AL7G52500 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 5.6e-34 148.7 285 50.2
Carub.0005s1274 Capsella rubella HOM05D004795 ORTHO05D005518 1.6e-33 147.1 265 52.8
CARHR214290 Cardamine hirsuta HOM05D004795 ORTHO05D005518 6.2e-33 145.2 273 52.7
Cpa.g.sc170.57 Carica papaya HOM05D004795 ORTHO05D005518 1.8e-24 117.1 201 45.3
Phvul.008G007200 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 1.1e-21 107.8 190 44.7
Duzib133G0847 Durio zibethinus HOM05D004795 ORTHO05D005518 1.4e-21 107.5 192 45.3
TWI77G0518 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 2.4e-21 106.7 195 44.6
Sabra04G0081300 Salix brachista HOM05D004795 ORTHO05D005518 3.2e-21 106.3 196 43.9
QL12p016552 Quercus lobata HOM05D004795 ORTHO05D005518 4.1e-21 105.9 195 42.1
QL02p051034 Quercus lobata HOM05D004795 ORTHO05D005518 5.4e-21 105.5 195 41.5
COL.COLO4_09348 Corchorus olitorius HOM05D004795 ORTHO05D005518 9.2e-21 104.8 194 43.8
MD17G1245500 Malus domestica HOM05D004795 ORTHO05D005518 9.2e-21 104.8 197 44.2
PGR004G2449 Punica granatum HOM05D004795 ORTHO05D005518 1.6e-20 104.0 182 44.0
Glyma.18G295700 Glycine max HOM05D004795 ORTHO05D005518 2.1e-20 103.6 205 41.0
Gohir.D11G325800 Gossypium hirsutum HOM05D004795 ORTHO05D005518 2.1e-20 103.6 193 44.6
VMungo1383G1737 Vigna mungo HOM05D004795 ORTHO05D005518 2.1e-20 103.6 195 44.1
Gorai.007G182000 Gossypium raimondii HOM05D004795 ORTHO05D005518 2.7e-20 103.2 184 43.5
Gohir.A11G163900 Gossypium hirsutum HOM05D004795 ORTHO05D005518 4.6e-20 102.4 184 43.5
Cfa007915 Carpinus fangiana HOM05D004795 ORTHO05D005518 7.8e-20 101.7 192 42.2
Gohir.D11G325700 Gossypium hirsutum HOM05D004795 ORTHO05D005518 7.8e-20 101.7 193 44.0
Manes.02G069600 Manihot esculenta HOM05D004795 ORTHO05D005518 7.8e-20 101.7 194 43.8
Cc07_g08730 Coffea canephora HOM05D004795 ORTHO05D005518 1.3e-19 100.9 187 41.2
TWI53G1522 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 1.7e-19 100.5 194 45.4
Duzib138G0938 Durio zibethinus HOM05D004795 ORTHO05D005518 3.0e-19 99.8 195 43.6
Gohir.D11G326300 Gossypium hirsutum HOM05D004795 ORTHO05D005518 3.0e-19 99.8 191 42.9
Eucgr.J01506 Eucalyptus grandis HOM05D004795 ORTHO05D005518 3.9e-19 99.4 187 42.8
Potri.017G116100 Populus trichocarpa HOM05D004795 ORTHO05D005518 5.1e-19 99.0 222 39.2
Thecc.04G132300 Theobroma cacao HOM05D004795 ORTHO05D005518 5.1e-19 99.0 195 43.6
Sopen02g030830 Solanum pennellii HOM05D004795 ORTHO05D005518 6.6e-19 98.6 182 41.8
CiPaw.03G062800 Carya illinoinensis HOM05D004795 ORTHO05D005518 1.1e-18 97.8 198 40.9
Nitab4.5_0000912g0060 Nicotiana tabacum HOM05D004795 ORTHO05D005518 1.1e-18 97.8 185 39.5
Atru.chr1.1662 Acer truncatum HOM05D004795 ORTHO05D005518 1.5e-18 97.4 195 40.0
arahy.Tifrunner.gnm1.ann1.HZ9SBP Arachis hypogaea HOM05D001490 ORTHO05D005518 2.5e-18 96.7 190 41.6
Duzib211G0180 Durio zibethinus HOM05D004795 ORTHO05D005518 2.5e-18 96.7 192 43.2
Ciclev10012794m.g Citrus clementina HOM05D004795 ORTHO05D005518 3.3e-18 96.3 167 47.3
Glyma.08G366700 Glycine max HOM05D004795 ORTHO05D005518 4.3e-18 95.9 150 49.3
Sabra17G0096100 Salix brachista HOM05D004795 ORTHO05D005518 4.3e-18 95.9 223 38.6
PGSC0003DMG402026390 Solanum tuberosum HOM05D004795 ORTHO05D005518 5.6e-18 95.5 183 42.1
MD09G1253700 Malus domestica HOM05D004795 ORTHO05D005518 1.2e-17 94.4 199 41.2
Ah.16g101690 Amaranthus hybridus HOM05D004795 ORTHO05D005518 2.1e-17 93.6 189 40.7
Prupe.3G143600 Prunus persica HOM05D004795 ORTHO05D005518 3.6e-17 92.8 197 41.1
CAN.G625.30 Capsicum annuum HOM05D004795 ORTHO05D005518 6.2e-17 92.0 201 38.8
CANSAT78G0274 Cannabis sativa HOM05D004795 ORTHO05D005518 8.1e-17 91.7 191 41.4
Peaxi162Scf00394g00712 Petunia axillaris HOM05D004795 ORTHO05D005518 8.1e-17 91.7 152 42.1
Haze_14167 Corylus avellana HOM05D004795 ORTHO05D005518 1.8e-16 90.5 192 39.6
Glyma.13G045200 Glycine max HOM05D004795 ORTHO05D005518 3.1e-16 89.7 197 39.1
Oeu016627.1 Olea europaea HOM05D004795 ORTHO05D005518 3.1e-16 89.7 183 37.7
Dinv33956 Davidia involucrata HOM05D001490 ORTHO05D001450 4.0e-16 89.4 156 45.5
ClCG05G012330 Citrullus lanatus HOM05D004795 ORTHO05D005518 5.2e-16 89.0 180 37.8
Ca_08078_v3 Cicer arietinum L. HOM05D004795 ORTHO05D005518 6.8e-16 88.6 161 42.2
TAR629G1480 Trochodendron aralioides HOM05D004795 ORTHO05D005518 6.8e-16 88.6 194 38.7
CsaV3_3G020240 Cucumis sativus L. HOM05D004795 ORTHO05D005518 8.9e-16 88.2 180 37.8
PGR042G3836 Punica granatum HOM05D004795 ORTHO05D005518 1.2e-15 87.8 159 41.5
VMungo0464G1679 Vigna mungo HOM05D004795 ORTHO05D005518 1.5e-15 87.4 200 39.0
Oeu039734.1 Olea europaea HOM05D004795 ORTHO05D005518 2.0e-15 87.0 186 37.6
RcHm_v2.0_Chr2g0148201 Rosa chinensis HOM05D004795 ORTHO05D005518 2.6e-15 86.7 201 39.8
Manes.01G111300 Manihot esculenta HOM05D004795 ORTHO05D005518 3.4e-15 86.3 194 39.7
Lalb_Chr10g0091311 Lupinus albus HOM05D004795 ORTHO05D005518 5.8e-15 85.5 155 41.9
Rhsim10G0068600 Rhododendron simsii HOM05D004795 ORTHO05D005518 5.8e-15 85.5 195 36.4
MELO3C023735.2 Cucumis melo HOM05D004795 ORTHO05D005518 7.6e-15 85.1 186 36.0
Gorai.007G356700 Gossypium raimondii HOM05D004795 ORTHO05D005518 7.6e-15 85.1 180 40.0
Nn3g17899 Nelumbo nucifera HOM05D004795 ORTHO05D005518 7.6e-15 85.1 200 36.5
MSTRG.3555 Avicennia marina HOM05D004795 ORTHO05D005518 9.9e-15 84.7 194 36.6
CiPaw.04G043000 Carya illinoinensis HOM05D004795 ORTHO05D005518 9.9e-15 84.7 197 38.6
Sed0015257 Sechium edule HOM05D004795 ORTHO05D005518 1.7e-14 84.0 157 43.3
Oeu050378.1 Olea europaea HOM05D004795 ORTHO05D005518 3.8e-14 82.8 183 37.7
Gohir.D11G170200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 6.4e-14 82.0 151 41.7
Lsat_1_v5_gn_4_154580 Lactuca sativa HOM05D004795 ORTHO05D005518 2.4e-13 80.1 170 38.2
FvH4_6g36230 Fragaria vesca HOM05D004795 ORTHO05D005518 3.2e-13 79.7 197 38.1
FAN14G2363 Fragaria x ananassa HOM05D004795 ORTHO05D005518 3.2e-13 79.7 197 38.1
FAN14G5069 Fragaria x ananassa HOM05D004795 ORTHO05D005518 3.2e-13 79.7 197 38.1
DCAR_025909 Daucus carota HOM05D004795 ORTHO05D005518 4.2e-13 79.3 156 40.4
FAN02G3195 Fragaria x ananassa HOM05D004795 ORTHO05D005518 4.2e-13 79.3 187 37.4
FAN05G2248 Fragaria x ananassa HOM05D004795 ORTHO05D005518 5.4e-13 79.0 187 37.4
TAR371G0696 Trochodendron aralioides HOM05D004795 ORTHO05D005518 5.4e-13 79.0 194 36.1
Nitab4.5_0004416g0090 Nicotiana tabacum HOM05D004795 ORTHO05D005518 7.1e-13 78.6 141 41.1
SGA_v2.0_scaffold115G32104 Striga asiatica HOM05D004795 ORTHO05D005518 7.1e-13 78.6 172 35.5
Sc11g0008370 Simmondsia chinensis HOM05D004795 ORTHO05D005518 1.2e-12 77.8 198 36.9
Psat3g098240 Pisum sativum HOM05D004795 ORTHO05D005518 2.1e-12 77.0 167 39.5
FAN09G4185 Fragaria x ananassa HOM05D004795 ORTHO05D005518 2.7e-12 76.6 197 37.6
Lj2g0010000 Lotus japonicus HOM05D004795 ORTHO05D005518 4.6e-12 75.9 201 32.8
Phvul.004G066100 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 7.8e-12 75.1 198 36.9
HanXRQChr11g0330661 Helianthus annuus HOM05D004795 ORTHO05D005518 1.3e-11 74.3 153 40.5
Lj1g0003158 Lotus japonicus HOM05D004795 ORTHO05D005518 3.0e-11 73.2 162 40.7
Ah.06g188560 Amaranthus hybridus HOM05D004795 ORTHO05D005518 3.9e-11 72.8 149 38.9
Gorai.001G202200 Gossypium raimondii HOM05D004795 ORTHO05D005518 3.9e-11 72.8 168 41.1
HanXRQChr11g0325401 Helianthus annuus HOM05D004795 ORTHO05D005518 8.7e-11 71.6 154 40.9
Potri.004G098200 Populus trichocarpa HOM05D004795 ORTHO05D005518 4.3e-10 69.3 123 42.3
Glyma.19G049900 Glycine max HOM05D004795 ORTHO05D005518 5.6e-10 68.9 185 35.7
TAR622G0902 Trochodendron aralioides HOM05D004795 ORTHO05D005518 5.6e-10 68.9 192 34.9
Gohir.D12G053200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.3e-09 67.8 181 35.4
ECA232G0641 Erigeron canadensis HOM05D000072 ORTHO05D000026 1.6e-09 67.4 97 49.5
Gorai.008G056400 Gossypium raimondii HOM05D004795 ORTHO05D005518 2.8e-09 66.6 180 34.4
TPR.G31528 Trifolium pratense HOM05D004795 ORTHO05D005518 2.8e-09 66.6 172 36.0
AUR62023290 Chenopodium quinoa HOM05D004795 ORTHO05D005518 3.6e-09 66.2 95 48.4
AUR62009011 Chenopodium quinoa HOM05D004795 ORTHO05D005518 4.8e-09 65.9 99 48.5
Hma1.2p1_1109F.1_g258120 Hydrangea macrophylla HOM05D004795 ORTHO05D005518 4.8e-09 65.9 133 39.8
AUR62043981 Chenopodium quinoa HOM05D004795 ORTHO05D005518 6.2e-09 65.5 94 50.0
Gohir.A12G054400 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.1e-08 64.7 182 35.7
Medtr6g018780 Medicago truncatula HOM05D004795 ORTHO05D005518 1.8e-08 63.9 100 46.0
PSO532G0010 Papaver somniferum HOM05D004795 ORTHO05D005518 1.8e-08 63.9 153 34.6
PSO541G1476 Papaver somniferum HOM05D004795 ORTHO05D005518 2.4e-08 63.5 162 32.1
PSO541G4271 Papaver somniferum HOM05D004795 ORTHO05D005518 6.9e-08 62.0 165 34.5
Solyc02g086140.2 Solanum lycopersicum HOM05D004795 ORTHO05D005518 9.0e-08 61.6 86 46.5
unitig_32.g11886 Utricularia gibba HOM05D004795 ORTHO05D005518 1.5e-07 60.8 157 37.6
Aqoxy3G00247 Aquilegia oxysepala HOM05D004795 ORTHO05D005518 2.2e-06 57.0 194 31.4
Lalb_Chr02g0158191 Lupinus albus HOM05D004795 ORTHO05D005518 4.9e-06 55.8 176 34.1
Medtr7g082230 Medicago truncatula HOM05D004795 ORTHO05D005518 4.9e-06 55.8 161 32.3
MBI09_g36997_MAGBIO Magnolia biondii HOM05D004795 ORTHO05D005518 6.4e-06 55.5 158 32.3


User provided reference genes

Program Settings