Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G25360 Arabidopsis lyrata HOM05D000292 ORTHO05D014388 2.6e-56 221.9 117 100.0
AT5G01130 Arabidopsis thaliana HOM05D000292 ORTHO05D000172 1.3e-23 113.2 99 62.6
A04p13080 Brassica napus HOM05D000292 ORTHO05D000172 1.7e-23 112.8 99 61.6
Carub.0006s0074 Capsella rubella HOM05D000292 ORTHO05D000172 6.6e-23 110.9 112 55.4
BcaC03g18457 Brassica carinata HOM05D000292 ORTHO05D000172 2.5e-22 109.0 107 51.4
BcaNung02208 Brassica carinata HOM05D000292 ORTHO05D000172 2.5e-22 109.0 107 51.4
C02p08040 Brassica napus HOM05D000292 ORTHO05D000172 2.5e-22 109.0 107 51.4
BolC2t06726H Brassica oleracea HOM05D000292 ORTHO05D000172 2.5e-22 109.0 107 51.4
AL6G11050 Arabidopsis lyrata HOM05D000292 ORTHO05D000172 3.3e-22 108.6 111 55.0
A02p03280 Brassica napus HOM05D000292 ORTHO05D000172 7.3e-22 107.5 107 50.5
BraA02t05298Z Brassica rapa HOM05D000292 ORTHO05D000172 7.3e-22 107.5 107 50.5
BraA04t16967Z Brassica rapa HOM05D000292 ORTHO05D000172 9.5e-22 107.1 111 55.9
A04p13060 Brassica napus HOM05D000292 ORTHO05D000172 1.6e-21 106.3 100 58.0
BcaB01g06200 Brassica carinata HOM05D000292 ORTHO05D000172 2.1e-21 105.9 108 54.6
AT5G01150 Arabidopsis thaliana HOM05D000292 ORTHO05D000172 3.6e-21 105.1 111 54.1
BcaB06g27454 Brassica carinata HOM05D000292 ORTHO05D000172 3.6e-21 105.1 83 63.9
Sp7g01870 Schrenkiella parvula HOM05D000292 ORTHO05D000172 6.8e-20 100.9 85 61.2
CARHR211440 Cardamine hirsuta HOM05D000292 ORTHO05D000172 2.0e-19 99.4 105 55.2
AL6G11090 Arabidopsis lyrata HOM05D000292 ORTHO05D000172 5.4e-17 91.3 102 53.9
THA.LOC104823279 Tarenaya hassleriana HOM05D000292 ORTHO05D000172 7.0e-17 90.9 105 45.7
BraA10t45392Z Brassica rapa HOM05D000292 ORTHO05D000172 1.6e-16 89.7 115 46.1
C04p46830 Brassica napus HOM05D000292 ORTHO05D000172 1.3e-15 86.7 76 57.9
Sp6g40510 Schrenkiella parvula HOM05D000292 ORTHO05D000172 3.9e-15 85.1 107 48.6
BolC4t26271H Brassica oleracea HOM05D000292 ORTHO05D000172 5.1e-15 84.7 115 46.1
AL8G17250 Arabidopsis lyrata HOM05D000292 ORTHO05D000172 6.6e-15 84.3 123 44.7
C06p44050 Brassica napus HOM05D000292 ORTHO05D000172 1.5e-14 83.2 102 45.1
AT5G01140 Arabidopsis thaliana HOM05D000292 ORTHO05D000172 2.5e-14 82.4 98 48.0
A07p36650 Brassica napus HOM05D000292 ORTHO05D000172 5.6e-14 81.3 99 47.5
BcaNung07339 Brassica carinata HOM05D000292 ORTHO05D000172 9.5e-14 80.5 99 46.5
C03p00640 Brassica napus HOM05D000292 ORTHO05D014388 1.6e-13 79.7 94 47.9
C03p08260 Brassica napus HOM05D000292 ORTHO05D014388 1.6e-13 79.7 94 47.9
BraA07t30755Z Brassica rapa HOM05D000292 ORTHO05D000172 1.6e-13 79.7 103 43.7
AL6G11080 Arabidopsis lyrata HOM05D000292 ORTHO05D000172 3.6e-13 78.6 95 45.3
BcaNung02761 Brassica carinata HOM05D000292 ORTHO05D000172 3.6e-13 78.6 114 47.4
C09p74540 Brassica napus HOM05D005357 ORTHO05D006354 3.6e-13 78.6 74 51.4
BolC9t60186H Brassica oleracea HOM05D005357 ORTHO05D006354 3.6e-13 78.6 74 51.4
BcaNung02764 Brassica carinata HOM05D000292 ORTHO05D000172 4.7e-13 78.2 95 47.4
C09p74530 Brassica napus HOM05D000292 ORTHO05D000172 4.7e-13 78.2 95 47.4
BolC9t60185H Brassica oleracea HOM05D000292 ORTHO05D000172 4.7e-13 78.2 95 47.4
AT5G43240 Arabidopsis thaliana HOM05D000292 ORTHO05D000172 6.2e-13 77.8 120 40.0
A04p13300 Brassica napus HOM05D000292 ORTHO05D000172 6.2e-13 77.8 95 46.3
AT5G01120 Arabidopsis thaliana HOM05D000292 ORTHO05D000172 8.1e-13 77.4 95 45.3
BcaC08g45841 Brassica carinata HOM05D000292 ORTHO05D000172 8.1e-13 77.4 103 43.7
A10p33600 Brassica napus HOM05D000292 ORTHO05D000172 8.1e-13 77.4 96 45.8
BolC6t38750H Brassica oleracea HOM05D000292 ORTHO05D000172 8.1e-13 77.4 103 43.7
THA.LOC104816225 Tarenaya hassleriana HOM05D000292 ORTHO05D000172 8.1e-13 77.4 100 42.0
C06p36280 Brassica napus HOM05D000292 ORTHO05D000172 1.1e-12 77.0 103 43.7
BraA10t45391Z Brassica rapa HOM05D000292 ORTHO05D000172 1.1e-12 77.0 96 45.8
Carub.0006s0075 Capsella rubella HOM05D000292 ORTHO05D000172 1.1e-12 77.0 95 45.3
Aa31LG3G1640 Aethionema arabicum HOM05D000292 ORTHO05D000172 1.4e-12 76.6 104 41.3
C03p00660 Brassica napus HOM05D000292 ORTHO05D014388 1.4e-12 76.6 94 45.7
BolC3t12629H Brassica oleracea HOM05D000292 ORTHO05D014388 1.4e-12 76.6 94 45.7
BcaB03g15530 Brassica carinata HOM05D000292 ORTHO05D000172 1.2e-11 73.6 103 44.7
BraA04t16988Z Brassica rapa HOM05D000292 ORTHO05D000172 1.2e-11 73.6 95 45.3
AL1G22150 Arabidopsis lyrata HOM05D000292 ORTHO05D000172 2.0e-11 72.8 95 45.3
AL428U10020 Arabidopsis lyrata HOM05D000292 ORTHO05D014388 3.4e-11 72.0 116 42.2
AT5G37320 Arabidopsis thaliana HOM05D000292 ORTHO05D016587 3.4e-11 72.0 94 43.6
A05p39770 Brassica napus HOM05D000292 ORTHO05D000172 3.4e-11 72.0 102 43.1
A07p31220 Brassica napus HOM05D000292 ORTHO05D000172 3.4e-11 72.0 113 39.8
A10p33610 Brassica napus HOM05D005357 ORTHO05D006354 3.4e-11 72.0 84 47.6
BraA05t22760Z Brassica rapa HOM05D000292 ORTHO05D000172 3.4e-11 72.0 102 43.1
C04p47080 Brassica napus HOM05D000292 ORTHO05D000172 4.4e-11 71.6 92 44.6
BolC4t26302H Brassica oleracea HOM05D000292 ORTHO05D000172 4.4e-11 71.6 92 44.6
BolC5t34533H Brassica oleracea HOM05D000292 ORTHO05D000172 4.4e-11 71.6 102 43.1
BcaB01g06087 Brassica carinata HOM05D000292 ORTHO05D014388 5.8e-11 71.2 73 52.1
BcaC05g29642 Brassica carinata HOM05D000292 ORTHO05D000172 7.5e-11 70.9 102 43.1
C05p58810 Brassica napus HOM05D000292 ORTHO05D000172 7.5e-11 70.9 102 43.1
BolC6t39478H Brassica oleracea HOM05D000292 ORTHO05D000172 9.9e-11 70.5 77 49.4
AL1G17320 Arabidopsis lyrata HOM05D000292 ORTHO05D000172 1.3e-10 70.1 83 47.0
AL638U10010 Arabidopsis lyrata HOM05D000292 ORTHO05D000172 1.3e-10 70.1 83 47.0
BcaC08g46466 Brassica carinata HOM05D000292 ORTHO05D000172 1.3e-10 70.1 77 51.9
Carub.0002s0600 Capsella rubella HOM05D000292 ORTHO05D000172 1.7e-10 69.7 97 40.2
Carub.0001s1072 Capsella rubella HOM05D000292 ORTHO05D000172 2.2e-10 69.3 94 45.7
Thhalv10012284m.g Eutrema salsugineum HOM05D000292 ORTHO05D016587 2.9e-10 68.9 96 41.7
Carub.0003s0828 Capsella rubella HOM05D000292 ORTHO05D000172 3.7e-10 68.6 101 42.6
CARHR107080 Cardamine hirsuta HOM05D000292 ORTHO05D000172 3.7e-10 68.6 107 43.9
AL3G20190 Arabidopsis lyrata HOM05D000292 ORTHO05D000172 4.9e-10 68.2 98 42.9
CARHR107070 Cardamine hirsuta HOM05D000292 ORTHO05D000172 6.4e-10 67.8 101 42.6
Thhalv10002899m.g Eutrema salsugineum HOM05D000292 ORTHO05D000172 6.4e-10 67.8 98 40.8
Sp5g15130 Schrenkiella parvula HOM05D000020 ORTHO05D000172 6.4e-10 67.8 101 40.6
BcaNung02765 Brassica carinata HOM05D000292 ORTHO05D000172 8.3e-10 67.4 111 38.7
BolC3t13333H Brassica oleracea HOM05D000292 ORTHO05D014388 8.3e-10 67.4 103 40.8
BcaB04g17549 Brassica carinata HOM05D000292 ORTHO05D000172 1.9e-09 66.2 81 40.7
Sp3g24320 Schrenkiella parvula HOM05D000292 ORTHO05D000172 4.1e-09 65.1 80 46.2
AL6G14060 Arabidopsis lyrata HOM05D000292 ORTHO05D014388 5.4e-09 64.7 50 66.0
BcaB06g26865 Brassica carinata HOM05D000292 ORTHO05D000172 7.1e-09 64.3 82 46.3
CARHR215750 Cardamine hirsuta HOM05D000292 ORTHO05D016587 9.2e-09 63.9 96 38.5
A05p39760 Brassica napus HOM05D000292 ORTHO05D000172 2.7e-08 62.4 101 38.6
BraA05t22759Z Brassica rapa HOM05D000292 ORTHO05D000172 2.7e-08 62.4 101 38.6
BraA07t31233Z Brassica rapa HOM05D000292 ORTHO05D000172 2.7e-08 62.4 68 50.0
C05p58800 Brassica napus HOM05D000292 ORTHO05D000172 4.6e-08 61.6 108 35.2
BolC3t12628H Brassica oleracea HOM05D000292 ORTHO05D014388 7.8e-08 60.8 68 50.0
BolC3t13335H Brassica oleracea HOM05D000292 ORTHO05D014388 7.8e-08 60.8 68 50.0
AT3G09140 Arabidopsis thaliana HOM05D000292 ORTHO05D000172 1.0e-07 60.5 84 46.4
A01p26210 Brassica napus HOM05D000292 ORTHO05D000172 1.0e-07 60.5 81 40.7
BraA01t02544Z Brassica rapa HOM05D000292 ORTHO05D000172 1.0e-07 60.5 81 40.7
Sp1g34300 Schrenkiella parvula HOM05D000292 ORTHO05D000172 1.0e-07 60.5 104 34.6
AL9U10500 Arabidopsis lyrata HOM05D001832 ORTHO05D001861 3.9e-07 58.5 78 42.3
BolC1t03264H Brassica oleracea HOM05D000292 ORTHO05D000172 3.9e-07 58.5 86 40.7
CARHR083500 Cardamine hirsuta HOM05D000292 ORTHO05D000172 3.9e-07 58.5 98 40.8
Sabra16G0150200 Salix brachista HOM05D000292 ORTHO05D000172 3.9e-07 58.5 104 36.5
AL1G22140 Arabidopsis lyrata HOM05D000292 ORTHO05D000172 6.6e-07 57.8 93 38.7
Carub.0001s1073 Capsella rubella HOM05D000292 ORTHO05D000172 8.6e-07 57.4 75 44.0
Sp4g10500 Schrenkiella parvula HOM05D000292 ORTHO05D000172 8.6e-07 57.4 85 44.7
BcaC09g49752 Brassica carinata HOM05D000292 ORTHO05D000172 1.1e-06 57.0 78 42.3
THA.LOC104816224 Tarenaya hassleriana HOM05D000292 ORTHO05D000172 1.1e-06 57.0 112 34.8
Thhalv10009362m.g Eutrema salsugineum HOM05D000292 ORTHO05D000172 1.9e-06 56.2 85 40.0
A07p06370 Brassica napus HOM05D000292 ORTHO05D000172 3.3e-06 55.5 80 41.2
CARHR107060 Cardamine hirsuta HOM05D000292 ORTHO05D000172 3.3e-06 55.5 98 37.8
Gohir.A01G224500 Gossypium hirsutum HOM05D000292 ORTHO05D000172 5.6e-06 54.7 89 36.0
HanXRQChr09g0241191 Helianthus annuus HOM05D000292 ORTHO05D000172 7.3e-06 54.3 81 42.0
Potri.001G247200 Populus trichocarpa HOM05D000292 ORTHO05D000172 7.3e-06 54.3 91 38.5
Sp7g01570 Schrenkiella parvula HOM05D000292 ORTHO05D000172 7.3e-06 54.3 102 37.3
TAR636G2800 Trochodendron aralioides HOM05D000292 ORTHO05D000172 7.3e-06 54.3 97 37.1
CARHR211450 Cardamine hirsuta HOM05D000292 ORTHO05D000172 9.5e-06 53.9 48 54.2
TAR636G0285 Trochodendron aralioides HOM05D000292 ORTHO05D000172 9.5e-06 53.9 97 37.1


User provided reference genes

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