Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G24420 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 1.3e-96 356.3 174 100.0
AT1G66520 Arabidopsis thaliana HOM05D006412 ORTHO05D008025 6.0e-73 277.7 219 67.6
AL2G22970 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 1.8e-72 276.2 219 67.6
Carub.0002s1254 Capsella rubella HOM05D006412 ORTHO05D008025 3.7e-70 268.5 219 66.7
BraA07t30973Z Brassica rapa HOM05D006412 ORTHO05D008025 1.5e-68 263.1 219 63.9
Aa31LG2G3160 Aethionema arabicum HOM05D006412 ORTHO05D008025 5.9e-68 261.2 219 63.9
BcaB03g15262 Brassica carinata HOM05D006412 ORTHO05D008025 7.6e-68 260.8 219 63.9
BcaC08g46048 Brassica carinata HOM05D006412 ORTHO05D008025 2.2e-67 259.2 219 63.0
A07p33470 Brassica napus HOM05D006412 ORTHO05D008025 2.2e-67 259.2 219 63.5
C06p39860 Brassica napus HOM05D006412 ORTHO05D008025 2.2e-67 259.2 219 63.0
BolC6t39074H Brassica oleracea HOM05D006412 ORTHO05D008025 2.9e-67 258.8 219 62.6
THA.LOC104822436 Tarenaya hassleriana HOM05D006412 ORTHO05D008025 3.2e-66 255.4 219 62.6
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 4.6e-65 251.5 206 66.0
Sp5g21570 Schrenkiella parvula HOM05D006412 ORTHO05D008025 1.8e-64 249.6 219 62.6
AUR62023199 Chenopodium quinoa HOM05D006412 ORTHO05D008025 3.8e-59 231.9 171 66.7
Cpa.g.sc116.15 Carica papaya HOM05D006412 ORTHO05D008025 3.2e-58 228.8 219 55.3
COL.COLO4_27119 Corchorus olitorius HOM05D006412 ORTHO05D008025 2.7e-57 225.7 188 63.3
GSVIVG01030886001 Vitis vinifera HOM05D006412 ORTHO05D008025 2.7e-57 225.7 218 56.4
Cfa007858 Carpinus fangiana HOM05D006412 ORTHO05D008025 3.6e-57 225.3 219 55.3
Dinv14869 Davidia involucrata HOM05D006412 ORTHO05D008025 3.6e-57 225.3 221 55.2
CSS0049075 Camellia sinensis var. sinensis HOM05D006412 ORTHO05D008025 1.4e-56 223.4 218 54.6
RcHm_v2.0_Chr3g0491591 Rosa chinensis HOM05D006412 ORTHO05D008025 2.3e-56 222.6 217 53.5
RcHm_v2.0_Chr3g0493551 Rosa chinensis HOM05D006412 ORTHO05D008025 5.1e-56 221.5 217 53.0
Migut.L00473 Erythranthe guttata HOM05D006412 ORTHO05D008025 8.8e-56 220.7 220 55.5
Sed0012276 Sechium edule HOM05D006412 ORTHO05D008025 8.8e-56 220.7 217 55.3
ECA232G0076 Erigeron canadensis HOM05D006412 ORTHO05D008025 2.0e-55 219.5 218 54.1
MD09G1260600 Malus domestica HOM05D006412 ORTHO05D008025 3.3e-55 218.8 216 53.7
Prupe.3G152400 Prunus persica HOM05D006412 ORTHO05D008025 3.3e-55 218.8 218 53.7
CANSAT78G1038 Cannabis sativa HOM05D006412 ORTHO05D008025 5.7e-55 218.0 218 54.6
PSO339G1787 Papaver somniferum HOM05D006412 ORTHO05D008025 5.7e-55 218.0 219 52.1
MELO3C020307.2 Cucumis melo HOM05D006412 ORTHO05D008025 9.7e-55 217.2 217 53.0
HanXRQChr09g0262341 Helianthus annuus HOM05D006412 ORTHO05D008025 9.7e-55 217.2 218 53.2
Manes.01G114900 Manihot esculenta HOM05D006412 ORTHO05D008025 2.2e-54 216.1 219 53.4
Eucgr.F02693 Eucalyptus grandis HOM05D006412 ORTHO05D008025 2.8e-54 215.7 219 52.1
FAN24G3364 Fragaria x ananassa HOM05D006412 ORTHO05D008025 2.8e-54 215.7 217 53.9
FvH4_2g04020 Fragaria vesca HOM05D006412 ORTHO05D008025 3.7e-54 215.3 217 53.9
AUR62026045 Chenopodium quinoa HOM05D006412 ORTHO05D008025 4.8e-54 214.9 216 54.6
SGA_v2.0_scaffold174G39268 Striga asiatica HOM05D006412 ORTHO05D008025 4.8e-54 214.9 217 52.5
Cc07_g08250 Coffea canephora HOM05D006412 ORTHO05D008025 6.3e-54 214.5 219 52.5
Lj2g0003354 Lotus japonicus HOM05D006412 ORTHO05D008025 6.3e-54 214.5 219 53.9
Nn3g18189 Nelumbo nucifera HOM05D006412 ORTHO05D008025 8.2e-54 214.2 219 52.5
Atru.chr1.1777 Acer truncatum HOM05D006412 ORTHO05D008025 1.1e-53 213.8 219 52.5
FAN15G2201 Fragaria x ananassa HOM05D006412 ORTHO05D008025 1.1e-53 213.8 217 53.5
Medtr6g003980 Medicago truncatula HOM05D006412 ORTHO05D008025 1.1e-53 213.8 219 53.4
PSO384G0683 Papaver somniferum HOM05D006412 ORTHO05D008025 1.1e-53 213.8 219 51.6
PGR042G1412 Punica granatum HOM05D006412 ORTHO05D008025 1.1e-53 213.8 219 52.1
SalBow3G1843 Salvia bowleyana HOM05D006412 ORTHO05D008025 1.4e-53 213.4 219 53.4
TWI74G1556 Tripterygium wilfordii HOM05D006412 ORTHO05D008025 1.4e-53 213.4 218 52.8
MSTRG.2784 Avicennia marina HOM05D006412 ORTHO05D008025 1.8e-53 213.0 218 50.9
ClCG05G010820 Citrullus lanatus HOM05D006412 ORTHO05D008025 1.8e-53 213.0 240 49.2
Sopen02g035910 Solanum pennellii HOM05D006412 ORTHO05D008025 2.4e-53 212.6 219 52.1
Nitab4.5_0003598g0080 Nicotiana tabacum HOM05D006412 ORTHO05D008025 3.1e-53 212.2 217 53.0
Sabra17G0101600 Salix brachista HOM05D006412 ORTHO05D008025 3.1e-53 212.2 219 53.0
Sabra17G0104300 Salix brachista HOM05D006412 ORTHO05D008025 4.1e-53 211.8 219 53.0
PGSC0003DMG400030600 Solanum tuberosum HOM05D006412 ORTHO05D008025 6.9e-53 211.1 219 52.1
TPR.G25248 Trifolium pratense HOM05D006412 ORTHO05D008025 6.9e-53 211.1 219 52.5
AUR62032836 Chenopodium quinoa HOM05D006412 ORTHO05D008025 9.1e-53 210.7 216 52.8
Gohir.D07G080800 Gossypium hirsutum HOM05D006412 ORTHO05D008025 9.1e-53 210.7 220 54.1
Gorai.001G085900 Gossypium raimondii HOM05D006412 ORTHO05D008025 9.1e-53 210.7 220 54.1
Nitab4.5_0002456g0120 Nicotiana tabacum HOM05D006412 ORTHO05D008025 9.1e-53 210.7 217 52.5
Peaxi162Scf00803g00420 Petunia axillaris HOM05D006412 ORTHO05D008025 1.5e-52 209.9 219 53.0
VMungo0464G0110 Vigna mungo HOM05D006412 ORTHO05D008025 4.5e-52 208.4 219 53.0
Sc11g0008580 Simmondsia chinensis HOM05D006412 ORTHO05D008025 5.9e-52 208.0 219 53.9
Solyc02g091290.3 Solanum lycopersicum HOM05D006412 ORTHO05D008025 5.9e-52 208.0 219 51.1
Glyma.05G001000 Glycine max HOM05D006412 ORTHO05D008025 1.0e-51 207.2 219 53.0
Ca_24327_v3 Cicer arietinum L. HOM05D006412 ORTHO05D008025 1.3e-51 206.8 219 52.5
Lsat_1_v5_gn_4_154881 Lactuca sativa HOM05D006412 ORTHO05D008025 1.3e-51 206.8 218 52.3
Phvul.004G001300 Phaseolus vulgaris HOM05D006412 ORTHO05D008025 1.7e-51 206.5 219 52.5
Oeu030807.1 Olea europaea HOM05D006412 ORTHO05D008025 2.2e-51 206.1 238 48.7
CAN.G625.77 Capsicum annuum HOM05D006412 ORTHO05D008025 5.0e-51 204.9 219 50.7
Aqoxy3G04032 Aquilegia oxysepala HOM05D006412 ORTHO05D008025 6.5e-51 204.5 219 50.2
Lj2A436G33 Lonicera japonica HOM05D006412 ORTHO05D008025 1.4e-50 203.4 202 58.4
Lalb_Chr03g0035001 Lupinus albus HOM05D006412 ORTHO05D008025 7.2e-50 201.1 219 51.6
unitig_32.g11755 Utricularia gibba HOM05D006412 ORTHO05D008025 2.7e-49 199.1 218 50.0
Hund16200 Selenicereus undatus HOM05D006412 ORTHO05D008025 4.7e-49 198.4 216 53.2
EL10Ac2g04491 Beta vulgaris HOM05D006412 ORTHO05D008025 5.2e-48 194.9 249 45.0
TAR629G1190 Trochodendron aralioides HOM05D006412 ORTHO05D008025 4.8e-46 188.3 199 52.8
Ciclev10013714m.g Citrus clementina HOM05D006412 ORTHO05D008025 9.1e-45 184.1 293 41.0
vmacro18058 Vaccinium macrocarpon HOM05D006412 ORTHO05D008025 1.6e-44 183.3 272 41.2
Os01g0687500 Oryza sativa ssp. japonica HOM05D006412 ORTHO05D008025 2.6e-44 182.6 217 47.5
Duzib133G0980 Durio zibethinus HOM05D006412 ORTHO05D008025 5.0e-43 178.3 189 52.9
MBI16_g44113_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 7.2e-42 174.5 189 52.4
MBI16_g24204_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 1.2e-41 173.7 218 47.2
SMO147G0011 Selaginella moellendorffii HOM05D006412 ORTHO05D008025 4.0e-40 168.7 217 43.3
HPP92_024416 Vanilla planifolia HOM05D006412 ORTHO05D008025 3.3e-39 165.6 217 44.7
AagrBONN_evm.TU.Sc2ySwM_344.1769 Anthoceros agrestis HOM05D006412 ORTHO05D008025 1.3e-38 163.7 220 43.2
SHI30139 Sapria himalayana HOM05D006412 ORTHO05D008025 4.8e-38 161.8 224 44.2
ATR0686G130 Amborella trichopoda HOM05D006412 ORTHO05D008025 9.1e-37 157.5 200 48.0
Pp3c16_620 Physcomitrium patens HOM05D006412 ORTHO05D008025 2.0e-36 156.4 215 44.2
arahy.Tifrunner.gnm1.ann1.QMY2CQ Arachis hypogaea HOM05D002475 ORTHO05D002710 7.7e-36 154.5 204 46.1
QL12p004163 Quercus lobata HOM05D006412 ORTHO05D008025 5.0e-35 151.8 176 51.1
arahy.Tifrunner.gnm1.ann1.1V0F05 Arachis hypogaea HOM05D002475 ORTHO05D008025 2.5e-34 149.4 217 42.4
DCAR_025879 Daucus carota HOM05D006412 ORTHO05D008025 7.5e-31 137.9 177 44.1
Cre12.g560550 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 1.4e-29 133.7 222 38.7
CBR_g48389 Chara braunii HOM05D006412 ORTHO05D008025 2.4e-29 132.9 238 34.9
MCO14G351 Micromonas commoda HOM05D006412 ORTHO05D008025 7.0e-29 131.3 221 38.5
SEGI_18017 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 1.2e-28 130.6 157 45.9
SEGI_25003 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 3.3e-26 122.5 120 48.3
Rhsim08G0085000 Rhododendron simsii HOM05D006412 ORTHO05D008025 4.7e-25 118.6 90 63.3
CARHR058440 Cardamine hirsuta HOM05D006412 ORTHO05D008025 2.3e-24 116.3 121 56.2
AL2G23010 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 1.5e-23 113.6 60 96.7
CsaV3_3G017690 Cucumis sativus L. HOM05D006412 ORTHO05D008025 2.4e-21 106.3 121 50.4
Mapoly0147s0008 Marchantia polymorpha HOM05D006412 ORTHO05D008025 3.1e-21 105.9 121 47.9
MBI08_g39920_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 5.4e-21 105.1 107 50.5
Gohir.A07G076300 Gossypium hirsutum HOM05D006412 ORTHO05D008025 3.5e-20 102.4 122 48.4
Thhalv10019000m.g Eutrema salsugineum HOM05D006412 ORTHO05D008025 3.8e-19 99.0 60 86.7
Zm00001eb156380 Zea mays HOM05D006412 ORTHO05D008025 1.5e-18 97.1 121 49.6
Psat1g052240 Pisum sativum HOM05D006412 ORTHO05D008025 2.5e-18 96.3 121 47.1
Thecc.04G123200 Theobroma cacao HOM05D006412 ORTHO05D008025 2.5e-18 96.3 121 47.9
CiPaw.03G067700 Carya illinoinensis HOM05D006412 ORTHO05D008025 3.3e-18 95.9 122 45.9
Potri.017G123300 Populus trichocarpa HOM05D006412 ORTHO05D008025 5.6e-18 95.1 121 49.6
Rhsim08G0084800 Rhododendron simsii HOM05D006412 ORTHO05D008025 1.2e-17 94.0 73 69.9
Haze_14211 Corylus avellana HOM05D006412 ORTHO05D008025 2.8e-17 92.8 73 69.9
Cre09.g392729 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 2.3e-16 89.7 162 37.0
SEGI_40413 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 4.4e-15 85.5 97 48.5
MBI13_g41159_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 1.1e-13 80.9 83 50.6
HanXRQChr16g0531301 Helianthus annuus HOM05D006412 ORTHO05D008025 1.2e-12 77.4 53 64.2
Mapoly0147s0006 Marchantia polymorpha HOM05D006412 ORTHO05D008025 1.6e-12 77.0 60 66.7
PRCOL_00006745 Prasinoderma coloniale HOM05D006412 ORTHO05D008025 1.7e-11 73.6 292 24.0


User provided reference genes

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