Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G24070 Arabidopsis lyrata HOM05D007291 ORTHO05D009038 8.3e-105 385.2 207 100.0
AT1G66345 Arabidopsis thaliana HOM05D007291 ORTHO05D009038 2.7e-87 327.0 208 81.7
Carub.0002s1237 Capsella rubella HOM05D007291 ORTHO05D009038 8.7e-78 295.4 210 75.7
Sp5g21370 Schrenkiella parvula HOM05D007291 ORTHO05D009038 4.5e-66 256.5 209 68.9
BcaC03g14744 Brassica carinata HOM05D007291 ORTHO05D009038 7.6e-66 255.8 207 68.1
C02p21950 Brassica napus HOM05D007291 ORTHO05D009038 7.6e-66 255.8 207 68.1
BolC2t08326H Brassica oleracea HOM05D007291 ORTHO05D009038 7.6e-66 255.8 207 68.1
CARHR058230 Cardamine hirsuta HOM05D007291 ORTHO05D009038 6.5e-65 252.7 207 66.2
A02p13610 Brassica napus HOM05D007291 ORTHO05D009038 1.9e-64 251.1 207 67.1
BraA02t06420Z Brassica rapa HOM05D007291 ORTHO05D009038 1.9e-64 251.1 207 67.1
BcaB05g24168 Brassica carinata HOM05D007291 ORTHO05D009038 2.5e-64 250.8 211 67.3
Thhalv10018418m.g Eutrema salsugineum HOM05D007291 ORTHO05D009038 2.3e-62 244.2 211 64.9
Aa31LG2G3020 Aethionema arabicum HOM05D007291 ORTHO05D009038 4.2e-56 223.4 207 62.3
THA.LOC104805618 Tarenaya hassleriana HOM05D007291 ORTHO05D009038 1.8e-46 191.4 187 57.2
Cpa.g.sc116.47 Carica papaya HOM05D007291 ORTHO05D009038 2.3e-38 164.5 178 53.4
Haze_11634 Corylus avellana HOM05D007291 ORTHO05D009038 2.6e-34 151.0 199 43.7
TAR371G0694 Trochodendron aralioides HOM05D007291 ORTHO05D009038 2.9e-33 147.5 170 44.7
TWI74G1032 Tripterygium wilfordii HOM05D007291 ORTHO05D009038 5.0e-33 146.7 202 42.1
Hma1.2p1_0524F.1_g172380 Hydrangea macrophylla HOM05D007291 ORTHO05D009038 1.5e-32 145.2 194 41.8
Hma1.2p1_1840F.1_g304950 Hydrangea macrophylla HOM05D007291 ORTHO05D009038 1.5e-32 145.2 194 41.8
AUR62012554 Chenopodium quinoa HOM05D007291 ORTHO05D009038 1.6e-31 141.7 204 43.6
CANSAT64G0946 Cannabis sativa HOM05D007291 ORTHO05D009038 2.1e-31 141.4 167 45.5
Prupe.4G237400 Prunus persica HOM05D007291 ORTHO05D009038 3.6e-31 140.6 192 42.7
Dinv28212 Davidia involucrata HOM05D007291 ORTHO05D009038 1.0e-30 139.0 180 42.2
Potri.004G090800 Populus trichocarpa HOM05D007291 ORTHO05D009038 1.4e-30 138.7 192 42.7
AUR62014645 Chenopodium quinoa HOM05D007291 ORTHO05D009038 1.8e-30 138.3 204 42.2
QL93p0100_0337 Quercus lobata HOM05D007291 ORTHO05D009038 1.8e-30 138.3 198 42.4
QL02p057926 Quercus lobata HOM05D007291 ORTHO05D009038 4.0e-30 137.1 191 42.4
Sabra04G0061000 Salix brachista HOM05D007291 ORTHO05D009038 4.0e-30 137.1 192 42.7
ClCG01G008820 Citrullus lanatus HOM05D007291 ORTHO05D009038 6.8e-30 136.3 167 44.9
Rhsim08G0018600 Rhododendron simsii HOM05D001542 ORTHO05D001416 1.2e-29 135.6 169 43.8
CsaV3_5G024140 Cucumis sativus L. HOM05D007291 ORTHO05D009038 1.5e-29 135.2 167 44.9
MBI04_g29831_MAGBIO Magnolia biondii HOM05D001170 ORTHO05D009038 2.6e-29 134.4 167 43.7
Sed0024711 Sechium edule HOM05D007291 ORTHO05D009038 2.6e-29 134.4 167 46.1
Atru.chr13.2096 Acer truncatum HOM05D007291 ORTHO05D009038 2.8e-28 131.0 167 45.5
Duzib268G1497 Durio zibethinus HOM05D007291 ORTHO05D009038 2.8e-28 131.0 180 42.8
Sc03g0007430 Simmondsia chinensis HOM05D000068 ORTHO05D004691 2.8e-28 131.0 174 42.0
arahy.Tifrunner.gnm1.ann1.HW3SC4 Arachis hypogaea HOM05D007291 ORTHO05D009038 6.3e-28 129.8 168 42.9
PGSC0003DMG401014601 Solanum tuberosum HOM05D007291 ORTHO05D009038 3.1e-27 127.5 186 38.2
Thecc.07G187000 Theobroma cacao HOM05D007291 ORTHO05D009038 4.1e-27 127.1 167 43.7
Cc07_g13560 Coffea canephora HOM05D007291 ORTHO05D009038 7.0e-27 126.3 201 39.8
Lalb_Chr02g0154661 Lupinus albus HOM05D007291 ORTHO05D009038 1.6e-26 125.2 169 39.6
Oeu032258.1 Olea europaea HOM05D007291 ORTHO05D009038 2.0e-26 124.8 189 38.6
FvH4_5g33100 Fragaria vesca HOM05D007291 ORTHO05D009038 3.5e-26 124.0 200 38.0
Sopen05g029730 Solanum pennellii HOM05D007291 ORTHO05D009038 3.5e-26 124.0 201 36.8
Aqoxy3G02430 Aquilegia oxysepala HOM05D007291 ORTHO05D009038 7.7e-26 122.9 191 38.2
CAN.G1181.19 Capsicum annuum HOM05D007291 ORTHO05D009038 7.7e-26 122.9 201 39.3
Manes.16G125800 Manihot esculenta HOM05D007291 ORTHO05D009038 7.7e-26 122.9 168 41.1
Ca_26721_v3 Cicer arietinum L. HOM05D007291 ORTHO05D009038 1.0e-25 122.5 156 41.7
Ciclev10011485m.g Citrus clementina HOM05D007291 ORTHO05D009038 1.0e-25 122.5 192 41.7
Gorai.009G366400 Gossypium raimondii HOM05D007291 ORTHO05D009038 1.3e-25 122.1 188 42.0
Ca_00776_v3 Cicer arietinum L. HOM05D000091 ORTHO05D009038 1.7e-25 121.7 170 38.8
Nn4g24244 Nelumbo nucifera HOM05D007291 ORTHO05D009038 2.9e-25 120.9 178 39.3
Solyc05g051340.3 Solanum lycopersicum HOM05D007291 ORTHO05D009038 5.0e-25 120.2 201 35.8
MSTRG.10708 Avicennia marina HOM05D007291 ORTHO05D009038 6.5e-25 119.8 167 41.3
Migut.H01009 Erythranthe guttata HOM05D007291 ORTHO05D009038 6.5e-25 119.8 177 38.4
CiPaw.01G118600 Carya illinoinensis HOM05D007291 ORTHO05D009038 8.5e-25 119.4 138 46.4
Psat6g098880 Pisum sativum HOM05D007291 ORTHO05D009038 8.5e-25 119.4 179 37.4
COL.COLO4_04575 Corchorus olitorius HOM05D007291 ORTHO05D009038 1.1e-24 119.0 151 43.7
Gorai.009G365100 Gossypium raimondii HOM05D007291 ORTHO05D009038 1.1e-24 119.0 183 42.1
SGA_v2.0_scaffold159G37611 Striga asiatica HOM05D007291 ORTHO05D009038 4.2e-24 117.1 170 40.6
SalBow1G1723 Salvia bowleyana HOM05D007291 ORTHO05D009038 5.5e-24 116.7 195 39.0
RcHm_v2.0_Chr7g0231271 Rosa chinensis HOM05D007291 ORTHO05D009038 7.2e-24 116.3 168 37.5
SHI30104 Sapria himalayana HOM05D007291 ORTHO05D009038 7.2e-24 116.3 169 38.5
Ah.14g088580 Amaranthus hybridus HOM05D007291 ORTHO05D009038 1.2e-23 115.5 174 39.7
TPR.G8243 Trifolium pratense HOM05D007291 ORTHO05D009038 1.2e-23 115.5 198 35.4
Lsat_1_v5_gn_2_69440 Lactuca sativa HOM05D007291 ORTHO05D009038 2.1e-23 114.8 178 38.2
RcHm_v2.0_Chr7g0231291 Rosa chinensis HOM05D007291 ORTHO05D009038 3.6e-23 114.0 148 40.5
CDE02G1611 Ceratophyllum demersum HOM05D007291 ORTHO05D009038 8.0e-23 112.8 168 36.9
Lj2g0016301 Lotus japonicus HOM05D007291 ORTHO05D009038 3.0e-22 110.9 168 39.3
HanXRQChr14g0444491 Helianthus annuus HOM05D007291 ORTHO05D009038 6.8e-22 109.8 201 35.3
FAN08G0725 Fragaria x ananassa HOM05D007291 ORTHO05D009038 7.5e-21 106.3 137 43.1
HPP92_001299 Vanilla planifolia HOM05D007291 ORTHO05D009038 9.8e-21 105.9 185 35.7
CSS0009024 Camellia sinensis var. sinensis HOM05D007956 ORTHO05D009038 2.2e-20 104.8 128 46.9
QL08p010035 Quercus lobata HOM05D007291 ORTHO05D009038 3.1e-19 100.9 201 33.3
ATR0829G190 Amborella trichopoda HOM05D007291 ORTHO05D009038 9.1e-19 99.4 168 34.5
Phvul.003G005900 Phaseolus vulgaris HOM05D007291 ORTHO05D009038 5.9e-18 96.7 170 35.9
DCAR_003433 Daucus carota HOM05D007291 ORTHO05D009038 1.7e-17 95.1 167 37.1
Gohir.D05G340000 Gossypium hirsutum HOM05D007291 ORTHO05D009038 5.0e-17 93.6 126 44.4
VMungo1383G1759 Vigna mungo HOM05D003919 ORTHO05D009038 5.0e-17 93.6 168 33.9
PGR044G2558 Punica granatum HOM05D007291 ORTHO05D009038 3.3e-16 90.9 197 31.5
SEGI_32122 Sequoiadendron giganteum HOM05D007291 ORTHO05D009038 2.8e-15 87.8 168 31.0
Medtr1g037260 Medicago truncatula HOM05D007291 ORTHO05D009038 2.3e-14 84.7 188 33.5
Actinidia28812 Actinidia chinensis HOM05D007291 ORTHO05D009038 8.9e-14 82.8 106 39.6
Glyma.09G282100 Glycine max HOM05D007291 ORTHO05D009038 5.7e-13 80.1 195 30.8
Medtr0026s0200 Medicago truncatula HOM05D001401 ORTHO05D006368 2.2e-12 78.2 193 32.1
Medtr4g068800 Medicago truncatula HOM05D007675 ORTHO05D009699 3.7e-12 77.4 193 32.1
Thhalv10027688m.g Eutrema salsugineum HOM05D007358 ORTHO05D009117 1.0e-09 69.3 204 28.9
AT5G40400 Arabidopsis thaliana HOM05D007358 ORTHO05D009117 3.9e-09 67.4 128 35.9
Aa31LG9G1210 Aethionema arabicum HOM05D007358 ORTHO05D009117 5.0e-09 67.0 170 32.4
QL11p039609 Quercus lobata HOM05D007675 ORTHO05D009699 6.6e-09 66.6 194 30.9
Psat7g206160 Pisum sativum HOM05D007675 ORTHO05D009699 8.6e-09 66.2 164 32.3
Prupe.8G107700 Prunus persica HOM05D007675 ORTHO05D009699 1.5e-08 65.5 208 26.0
SEGI_12665 Sequoiadendron giganteum HOM05D007455 ORTHO05D009431 1.5e-08 65.5 122 34.4
Ciclev10028281m.g Citrus clementina HOM05D007675 ORTHO05D009699 2.5e-08 64.7 191 30.4
AL7G49460 Arabidopsis lyrata HOM05D007358 ORTHO05D009117 3.3e-08 64.3 212 27.8
C04p47210 Brassica napus HOM05D007358 ORTHO05D009117 5.6e-08 63.5 191 29.3
BolC4t26320H Brassica oleracea HOM05D007358 ORTHO05D009117 5.6e-08 63.5 191 28.8
FAN04G0610 Fragaria x ananassa HOM05D007291 ORTHO05D009038 5.6e-08 63.5 64 51.6
Carub.0007s3520 Capsella rubella HOM05D007358 ORTHO05D009117 7.3e-08 63.2 210 28.1
A04p13440 Brassica napus HOM05D007358 ORTHO05D009117 9.5e-08 62.8 205 28.3
Migut.N01220 Erythranthe guttata HOM05D007675 ORTHO05D009699 9.5e-08 62.8 201 28.9
THA.LOC104805375 Tarenaya hassleriana HOM05D007358 ORTHO05D009117 9.5e-08 62.8 179 29.1
CARHR261620 Cardamine hirsuta HOM05D007358 ORTHO05D009117 1.6e-07 62.0 210 28.1
Lj3g0001256 Lotus japonicus HOM05D007675 ORTHO05D009699 1.6e-07 62.0 203 29.6
Psat6g221080 Pisum sativum HOM05D007675 ORTHO05D009699 1.6e-07 62.0 159 31.4
PGSC0003DMG400008266 Solanum tuberosum HOM05D007675 ORTHO05D009699 1.6e-07 62.0 200 25.5
unitig_21.g20398 Utricularia gibba HOM05D007291 ORTHO05D009038 1.6e-07 62.0 101 42.6
BraA04t17002Z Brassica rapa HOM05D007358 ORTHO05D009117 2.1e-07 61.6 205 27.8
Eucgr.I01754 Eucalyptus grandis HOM05D007358 ORTHO05D009117 2.8e-07 61.2 202 26.2
Prupe.2G102900 Prunus persica HOM05D007455 ORTHO05D009431 2.8e-07 61.2 100 37.0
SalBow6G1669 Salvia bowleyana HOM05D007358 ORTHO05D009117 2.8e-07 61.2 200 26.0
SGA_v2.0_scaffold122G33180 Striga asiatica HOM05D007358 ORTHO05D009117 2.8e-07 61.2 182 26.9
MD09G1028300 Malus domestica HOM05D007358 ORTHO05D009117 3.6e-07 60.8 200 25.5
TAR636G1848 Trochodendron aralioides HOM05D007455 ORTHO05D009431 3.6e-07 60.8 201 29.4
Glyma.11G122100 Glycine max HOM05D007675 ORTHO05D009699 4.7e-07 60.5 211 27.5
PGR142G1723 Punica granatum HOM05D007358 ORTHO05D009117 4.7e-07 60.5 178 30.3
ATR0733G100 Amborella trichopoda HOM05D007675 ORTHO05D009699 8.0e-07 59.7 206 26.7
MSTRG.8212 Avicennia marina HOM05D007358 ORTHO05D009117 8.0e-07 59.7 174 27.6
CAN.G354.45 Capsicum annuum HOM05D007390 ORTHO05D009114 8.0e-07 59.7 125 36.0
FAN18G3657 Fragaria x ananassa HOM05D007291 ORTHO05D009038 8.0e-07 59.7 64 50.0
CARHR211430 Cardamine hirsuta HOM05D007455 ORTHO05D009431 1.0e-06 59.3 176 29.0
Gorai.002G213900 Gossypium raimondii HOM05D007675 ORTHO05D009699 1.0e-06 59.3 207 29.0
TWI63G0498 Tripterygium wilfordii HOM05D002890 ORTHO05D009847 1.0e-06 59.3 194 27.3
BcaB06g27500 Brassica carinata HOM05D007358 ORTHO05D009117 1.4e-06 58.9 210 26.2
Dinv36177 Davidia involucrata HOM05D007455 ORTHO05D009431 1.4e-06 58.9 193 28.0
Thecc.02G030300 Theobroma cacao HOM05D007675 ORTHO05D009699 1.4e-06 58.9 206 27.2
Aqoxy4G00642 Aquilegia oxysepala HOM05D007390 ORTHO05D009114 1.8e-06 58.5 113 34.5
CiPaw.03G042400 Carya illinoinensis HOM05D007358 ORTHO05D009117 1.8e-06 58.5 194 27.8
Peaxi162Scf00016g00164 Petunia axillaris HOM05D006858 ORTHO05D008767 1.8e-06 58.5 190 25.3
Gohir.D01G172300 Gossypium hirsutum HOM05D007675 ORTHO05D009699 2.3e-06 58.2 202 28.2
Nitab4.5_0001361g0100 Nicotiana tabacum HOM05D007675 ORTHO05D009699 2.3e-06 58.2 193 28.5
VMungo1127G1032 Vigna mungo HOM05D007675 ORTHO05D009699 2.3e-06 58.2 191 27.7
CAN.G630.43 Capsicum annuum HOM05D007675 ORTHO05D009699 4.0e-06 57.4 193 28.0
Cpa.g.sc84.2 Carica papaya HOM05D007455 ORTHO05D009431 4.0e-06 57.4 100 38.0
Gohir.A01G181200 Gossypium hirsutum HOM05D007675 ORTHO05D009699 4.0e-06 57.4 207 28.5
Sp7g01520 Schrenkiella parvula HOM05D007358 ORTHO05D009117 4.0e-06 57.4 175 28.6
Sopen10g022700 Solanum pennellii HOM05D007675 ORTHO05D009699 4.0e-06 57.4 196 25.0
TAR626G0036 Trochodendron aralioides HOM05D007390 ORTHO05D009114 5.2e-06 57.0 124 34.7
Nitab4.5_0000756g0010 Nicotiana tabacum HOM05D007390 ORTHO05D009114 6.8e-06 56.6 124 33.9
SEGI_06868 Sequoiadendron giganteum HOM05D007291 ORTHO05D009038 6.8e-06 56.6 167 25.1
Eucgr.I01233 Eucalyptus grandis HOM05D007675 ORTHO05D009699 8.9e-06 56.2 165 29.7
Hund17802 Selenicereus undatus HOM05D007358 ORTHO05D009117 8.9e-06 56.2 194 26.8


User provided reference genes

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